Wall clock time and date at job start Tue Mar 31 2020 12:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 C 1.52994 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47217 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47217 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46873 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47012 * 184.77277 * 7 6 5 9 9 N 1.46497 * 109.47098 * 184.59524 * 8 7 6 10 10 C 1.46504 * 119.99988 * 95.28564 * 9 8 7 11 11 C 1.50701 * 109.47004 * 269.99868 * 10 9 8 12 12 C 1.38231 * 120.00014 * 89.99895 * 11 10 9 13 13 C 1.38236 * 119.99951 * 179.97438 * 12 11 10 14 14 C 1.38231 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.38229 * 120.00072 * 0.27367 * 14 13 12 16 16 C 1.38233 * 119.99876 * 269.98100 * 11 10 9 17 17 C 1.34779 * 120.00240 * 275.28110 * 9 8 7 18 18 O 1.21692 * 120.00100 * 174.64262 * 17 9 8 19 19 C 1.46376 * 119.99768 * 354.64455 * 17 9 8 20 20 H 1.07998 * 120.00081 * 342.31553 * 19 17 9 21 21 C 1.40045 * 120.00198 * 162.31659 * 19 17 9 22 22 N 1.30665 * 120.00529 * 166.65423 * 21 19 17 23 23 Si 1.86809 * 119.99629 * 346.65600 * 21 19 17 24 24 H 1.48495 * 109.47261 * 88.58037 * 23 21 19 25 25 H 1.48507 * 109.46806 * 208.58433 * 23 21 19 26 26 H 1.48500 * 109.47027 * 328.57543 * 23 21 19 27 27 H 1.09003 * 109.46673 * 299.99589 * 1 2 3 28 28 H 1.08996 * 109.47004 * 59.99943 * 1 2 3 29 29 H 1.08999 * 109.46769 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46780 * 239.99705 * 2 1 3 31 31 H 1.08996 * 109.47004 * 120.00057 * 2 1 3 32 32 H 1.08997 * 109.47055 * 60.00212 * 3 2 1 33 33 H 1.09000 * 109.46556 * 299.99961 * 3 2 1 34 34 H 1.09004 * 109.47499 * 60.00034 * 4 3 2 35 35 H 1.08998 * 109.47389 * 300.00290 * 4 3 2 36 36 H 1.09004 * 109.46750 * 59.99709 * 5 4 3 37 37 H 1.08998 * 109.47286 * 300.00485 * 5 4 3 38 38 H 1.08997 * 109.47201 * 60.00319 * 6 5 4 39 39 H 1.09000 * 109.47403 * 299.99460 * 6 5 4 40 40 H 1.09000 * 109.47586 * 64.77654 * 7 6 5 41 41 H 1.08997 * 109.47060 * 304.76887 * 7 6 5 42 42 H 1.09003 * 109.47481 * 64.59699 * 8 7 6 43 43 H 1.09003 * 109.47580 * 304.59505 * 8 7 6 44 44 H 1.09001 * 109.47380 * 149.99845 * 10 9 8 45 45 H 1.09003 * 109.47164 * 29.99794 * 10 9 8 46 46 H 1.07998 * 120.00101 * 359.97438 * 12 11 10 47 47 H 1.08002 * 119.99961 * 179.97438 * 13 12 11 48 48 H 1.08003 * 119.99850 * 180.02562 * 14 13 12 49 49 H 1.08006 * 119.99937 * 179.72466 * 15 14 13 50 50 H 1.08001 * 120.00318 * 359.97438 * 16 11 10 51 51 H 0.96999 * 120.00171 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 -0.0013 6 6 5.6100 2.8849 -0.0026 7 6 6.1200 4.3274 -0.0026 8 6 7.6452 4.3291 -0.1239 9 7 8.1423 5.7028 -0.0138 10 6 8.6002 6.2146 1.2804 11 6 7.4413 6.8433 2.0104 12 6 6.6568 6.0769 2.8518 13 6 5.5941 6.6538 3.5218 14 6 5.3164 7.9970 3.3508 15 6 6.0978 8.7622 2.5055 16 6 7.1632 8.1864 1.8389 17 6 8.1785 6.4958 -1.1030 18 8 8.4986 7.6648 -0.9942 19 6 7.8328 5.9508 -2.4168 20 1 7.8281 4.8823 -2.5740 21 6 7.5082 6.8149 -3.4700 22 7 7.4554 6.3616 -4.6944 23 14 7.1509 8.6156 -3.1244 24 1 8.4176 9.3891 -3.1693 25 1 6.2139 9.1400 -4.1502 26 1 6.5368 8.7490 -1.7789 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9331 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 3.7171 3.3991 0.8887 37 1 3.7164 3.3986 -0.8912 38 1 5.9726 2.3710 -0.8928 39 1 5.9742 2.3713 0.8872 40 1 5.8291 4.8158 0.9275 41 1 5.6879 4.8656 -0.8462 42 1 7.9334 3.9149 -1.0901 43 1 8.0739 3.7226 0.6739 44 1 9.3777 6.9617 1.1212 45 1 9.0014 5.3935 1.8745 46 1 6.8740 5.0275 2.9857 47 1 4.9808 6.0549 4.1789 48 1 4.4864 8.4478 3.8746 49 1 5.8780 9.8108 2.3685 50 1 7.7766 8.7854 1.1820 51 1 7.2309 6.9602 -5.4239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773630548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:19 Heat of formation + Delta-G solvation = -63.094934 kcal Electronic energy + Delta-G solvation = -26889.155504 eV Core-core repulsion = 23365.332877 eV Total energy + Delta-G solvation = -3523.822627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.25536 -37.84789 -36.78461 -35.16556 -33.81764 -32.80287 -31.70390 -30.56945 -30.31784 -27.51821 -26.95164 -24.96426 -23.83704 -22.19201 -21.63319 -21.14588 -20.94477 -20.47881 -19.06742 -16.63687 -16.49125 -16.14385 -15.86698 -15.21575 -14.89033 -14.67810 -14.62701 -14.15760 -13.91568 -13.79975 -13.43838 -13.32293 -13.04522 -12.66425 -12.40698 -12.35824 -12.27697 -12.21797 -12.09701 -11.67284 -11.54124 -11.39948 -11.32277 -11.06217 -10.97964 -10.85181 -10.75102 -10.60258 -10.57005 -10.44544 -10.41762 -10.14149 -10.03117 -9.47675 -8.98462 -8.54137 -8.48787 -7.85406 -7.53315 -6.60855 -4.77748 1.67833 1.76677 3.44605 3.47677 3.68628 3.99526 4.22162 4.40738 4.55504 4.67623 4.79550 4.95649 5.11855 5.15865 5.19026 5.24350 5.30088 5.33462 5.40633 5.43749 5.50945 5.62534 5.63096 5.67576 5.69585 5.75121 5.82436 5.84395 5.88639 5.96010 6.00609 6.03050 6.06559 6.15620 6.21257 6.24320 6.27266 6.34710 6.36788 6.42133 6.44472 6.51829 6.76565 6.78059 6.86643 6.92522 7.04406 7.18500 7.37254 7.67849 7.92098 8.35943 8.74591 9.16857 10.08211 10.40895 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004057 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.784525 B = 6899.411684 C = 8754.432733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.139 4.139 8 C 0.133 3.867 9 N -0.627 5.627 10 C 0.160 3.840 11 C -0.088 4.088 12 C -0.109 4.109 13 C -0.130 4.130 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.091 4.091 17 C 0.557 3.443 18 O -0.615 6.615 19 C -0.531 4.531 20 H 0.090 0.910 21 C 0.107 3.893 22 N -0.828 5.828 23 Si 0.954 3.046 24 H -0.277 1.277 25 H -0.319 1.319 26 H -0.265 1.265 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.129 0.871 51 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -8.465 13.191 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.178 4.178 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.036 3.964 11 C -0.090 4.090 12 C -0.128 4.128 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.145 4.145 16 C -0.109 4.109 17 C 0.366 3.634 18 O -0.506 6.506 19 C -0.566 4.566 20 H 0.108 0.892 21 C -0.111 4.111 22 N -0.458 5.458 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.250 1.250 26 H -0.190 1.190 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.147 0.853 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.234 -7.926 13.032 17.334 hybrid contribution -0.385 0.644 0.001 0.750 sum -8.619 -7.282 13.034 17.239 Atomic orbital electron populations 1.21787 0.96164 1.01328 1.01782 1.21548 0.95617 0.97292 1.01843 1.21639 0.95905 0.96340 1.02011 1.21614 0.94890 0.97390 1.01763 1.21584 0.95958 0.96037 1.02027 1.21504 0.94907 0.97372 1.01382 1.22080 0.96931 0.95893 1.02914 1.21265 0.93031 0.83244 1.01608 1.47661 1.68072 1.13418 1.06785 1.20092 0.93388 0.98037 0.84874 1.20494 0.98406 0.93973 0.96089 1.20957 0.95576 0.99118 0.97149 1.20995 0.98088 0.95115 1.00647 1.21027 0.99699 0.94422 0.99519 1.21141 0.96066 0.99742 0.97601 1.21305 0.97087 0.95163 0.97351 1.18303 0.76855 0.84136 0.84084 1.90229 1.56125 1.18361 1.85911 1.20740 1.48581 0.96033 0.91289 0.89247 1.25672 0.90156 1.01661 0.93630 1.69579 1.37560 1.38662 0.99966 0.85444 0.77924 0.81283 0.76810 1.20276 1.24979 1.18959 0.92878 0.92754 0.93013 0.92102 0.92253 0.92234 0.92015 0.92069 0.92377 0.92439 0.91896 0.91981 0.92797 0.92127 0.90841 0.90240 0.92962 0.90033 0.91616 0.86652 0.86791 0.86868 0.86685 0.85259 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.07 5.93 -26.72 -0.16 -1.23 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.25 5.21 -26.73 -0.14 -1.39 16 5 C -0.12 -1.47 5.21 -26.73 -0.14 -1.61 16 6 C -0.11 -1.52 5.21 -26.73 -0.14 -1.66 16 7 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 8 C 0.13 2.34 5.25 -4.04 -0.02 2.31 16 9 N -0.63 -13.08 2.47 -176.72 -0.44 -13.52 16 10 C 0.16 2.88 5.53 -5.19 -0.03 2.85 16 11 C -0.09 -1.53 5.37 -104.63 -0.56 -2.09 16 12 C -0.11 -1.63 7.81 -39.58 -0.31 -1.93 16 13 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 14 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 15 C -0.13 -2.04 10.05 -39.58 -0.40 -2.43 16 16 C -0.09 -1.67 9.56 -39.58 -0.38 -2.05 16 17 C 0.56 14.40 7.11 -12.99 -0.09 14.31 16 18 O -0.61 -17.18 11.70 5.20 0.06 -17.12 16 19 C -0.53 -14.64 9.12 -35.63 -0.32 -14.97 16 20 H 0.09 2.47 6.28 -52.49 -0.33 2.14 16 21 C 0.11 3.02 5.52 -17.37 -0.10 2.92 16 22 N -0.83 -23.43 13.92 55.55 0.77 -22.65 16 23 Si 0.95 25.16 25.92 -169.99 -4.41 20.76 16 24 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.32 -8.03 7.11 56.52 0.40 -7.63 16 26 H -0.26 -7.27 6.84 56.52 0.39 -6.89 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.01 5.99 -51.93 -0.31 0.69 16 41 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 42 H 0.08 1.52 6.10 -51.93 -0.32 1.21 16 43 H 0.05 0.77 7.83 -51.93 -0.41 0.36 16 44 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 45 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 46 H 0.12 1.50 8.05 -52.49 -0.42 1.08 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 49 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 50 H 0.13 2.65 7.37 -52.49 -0.39 2.26 16 51 H 0.28 7.34 8.29 -40.82 -0.34 7.01 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -30.70 405.85 -10.69 -41.38 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -9.30 Total: 1.02 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -3.50 Total: -15.98 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.34 Total: -36.17 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.06 Total: -17.12 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.41 Total: 20.76 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.70 -10.69 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773630548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.711 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds