Wall clock time and date at job start Tue Mar 31 2020 12:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 C 1.52994 * 109.46873 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47217 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47217 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46873 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47012 * 184.77277 * 7 6 5 9 9 N 1.46497 * 109.47098 * 184.59524 * 8 7 6 10 10 C 1.46504 * 119.99988 * 95.28564 * 9 8 7 11 11 C 1.50701 * 109.47004 * 269.99868 * 10 9 8 12 12 C 1.38231 * 120.00014 * 89.99895 * 11 10 9 13 13 C 1.38236 * 119.99951 * 179.97438 * 12 11 10 14 14 C 1.38231 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.38229 * 120.00072 * 0.27367 * 14 13 12 16 16 C 1.38233 * 119.99876 * 269.98100 * 11 10 9 17 17 C 1.34779 * 120.00240 * 275.28110 * 9 8 7 18 18 O 1.21692 * 120.00100 * 174.64262 * 17 9 8 19 19 C 1.46376 * 119.99768 * 354.64455 * 17 9 8 20 20 H 1.07998 * 120.00081 * 342.31553 * 19 17 9 21 21 C 1.40045 * 120.00198 * 162.31659 * 19 17 9 22 22 N 1.30665 * 120.00529 * 166.65423 * 21 19 17 23 23 Si 1.86809 * 119.99629 * 346.65600 * 21 19 17 24 24 H 1.48495 * 109.47261 * 88.58037 * 23 21 19 25 25 H 1.48507 * 109.46806 * 208.58433 * 23 21 19 26 26 H 1.48500 * 109.47027 * 328.57543 * 23 21 19 27 27 H 1.09003 * 109.46673 * 299.99589 * 1 2 3 28 28 H 1.08996 * 109.47004 * 59.99943 * 1 2 3 29 29 H 1.08999 * 109.46769 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46780 * 239.99705 * 2 1 3 31 31 H 1.08996 * 109.47004 * 120.00057 * 2 1 3 32 32 H 1.08997 * 109.47055 * 60.00212 * 3 2 1 33 33 H 1.09000 * 109.46556 * 299.99961 * 3 2 1 34 34 H 1.09004 * 109.47499 * 60.00034 * 4 3 2 35 35 H 1.08998 * 109.47389 * 300.00290 * 4 3 2 36 36 H 1.09004 * 109.46750 * 59.99709 * 5 4 3 37 37 H 1.08998 * 109.47286 * 300.00485 * 5 4 3 38 38 H 1.08997 * 109.47201 * 60.00319 * 6 5 4 39 39 H 1.09000 * 109.47403 * 299.99460 * 6 5 4 40 40 H 1.09000 * 109.47586 * 64.77654 * 7 6 5 41 41 H 1.08997 * 109.47060 * 304.76887 * 7 6 5 42 42 H 1.09003 * 109.47481 * 64.59699 * 8 7 6 43 43 H 1.09003 * 109.47580 * 304.59505 * 8 7 6 44 44 H 1.09001 * 109.47380 * 149.99845 * 10 9 8 45 45 H 1.09003 * 109.47164 * 29.99794 * 10 9 8 46 46 H 1.07998 * 120.00101 * 359.97438 * 12 11 10 47 47 H 1.08002 * 119.99961 * 179.97438 * 13 12 11 48 48 H 1.08003 * 119.99850 * 180.02562 * 14 13 12 49 49 H 1.08006 * 119.99937 * 179.72466 * 15 14 13 50 50 H 1.08001 * 120.00318 * 359.97438 * 16 11 10 51 51 H 0.96999 * 120.00171 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 -0.0013 6 6 5.6100 2.8849 -0.0026 7 6 6.1200 4.3274 -0.0026 8 6 7.6452 4.3291 -0.1239 9 7 8.1423 5.7028 -0.0138 10 6 8.6002 6.2146 1.2804 11 6 7.4413 6.8433 2.0104 12 6 6.6568 6.0769 2.8518 13 6 5.5941 6.6538 3.5218 14 6 5.3164 7.9970 3.3508 15 6 6.0978 8.7622 2.5055 16 6 7.1632 8.1864 1.8389 17 6 8.1785 6.4958 -1.1030 18 8 8.4986 7.6648 -0.9942 19 6 7.8328 5.9508 -2.4168 20 1 7.8281 4.8823 -2.5740 21 6 7.5082 6.8149 -3.4700 22 7 7.4554 6.3616 -4.6944 23 14 7.1509 8.6156 -3.1244 24 1 8.4176 9.3891 -3.1693 25 1 6.2139 9.1400 -4.1502 26 1 6.5368 8.7490 -1.7789 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9331 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 3.7171 3.3991 0.8887 37 1 3.7164 3.3986 -0.8912 38 1 5.9726 2.3710 -0.8928 39 1 5.9742 2.3713 0.8872 40 1 5.8291 4.8158 0.9275 41 1 5.6879 4.8656 -0.8462 42 1 7.9334 3.9149 -1.0901 43 1 8.0739 3.7226 0.6739 44 1 9.3777 6.9617 1.1212 45 1 9.0014 5.3935 1.8745 46 1 6.8740 5.0275 2.9857 47 1 4.9808 6.0549 4.1789 48 1 4.4864 8.4478 3.8746 49 1 5.8780 9.8108 2.3685 50 1 7.7766 8.7854 1.1820 51 1 7.2309 6.9602 -5.4239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773630548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:18 Heat of formation + Delta-G solvation = -77.115664 kcal Electronic energy + Delta-G solvation = -26889.763489 eV Core-core repulsion = 23365.332877 eV Total energy + Delta-G solvation = -3524.430612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.72701 -39.42773 -37.80072 -36.61432 -35.14628 -34.80553 -32.91764 -31.77018 -31.47504 -29.09337 -28.38817 -26.45780 -25.03519 -23.38380 -22.80959 -22.37131 -21.84132 -21.51462 -20.87664 -18.58998 -17.92775 -17.72564 -17.03121 -16.71622 -16.25249 -16.08607 -15.75278 -15.57846 -15.28902 -14.82522 -14.56122 -14.51574 -14.39311 -14.20570 -14.00622 -13.85658 -13.63443 -13.39105 -13.27730 -13.18319 -12.94760 -12.77295 -12.59028 -12.50018 -12.23988 -12.04955 -11.91102 -11.78722 -11.74760 -11.66911 -11.51300 -11.32970 -11.25037 -11.19468 -11.13433 -10.08238 -9.74358 -9.58267 -9.23792 -8.79575 -6.94476 0.46592 0.55632 1.28229 1.30336 1.52341 2.08921 2.29778 2.64274 3.10261 3.33272 3.79594 3.94967 4.01823 4.03428 4.16711 4.20023 4.20451 4.30226 4.32853 4.36131 4.38020 4.44300 4.62178 4.64267 4.72262 4.73910 4.79376 4.82869 4.84597 4.91415 4.95907 5.01562 5.07281 5.15887 5.17072 5.17391 5.21155 5.22823 5.24356 5.31986 5.42824 5.44123 5.54563 5.59579 5.60502 5.63169 5.65096 5.73638 5.83649 6.06749 6.18798 6.28871 6.65042 7.18263 8.05016 8.27504 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004057 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.784525 B = 6899.411684 C = 8754.432733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.128 4.128 8 C 0.128 3.872 9 N -0.623 5.623 10 C 0.159 3.841 11 C -0.106 4.106 12 C -0.105 4.105 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.141 4.141 16 C -0.124 4.124 17 C 0.555 3.445 18 O -0.642 6.642 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.076 3.924 22 N -0.850 5.850 23 Si 0.996 3.004 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.288 1.288 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.107 0.893 46 H 0.143 0.857 47 H 0.152 0.848 48 H 0.146 0.854 49 H 0.124 0.876 50 H 0.091 0.909 51 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 -10.527 16.203 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.143 4.143 7 C -0.167 4.167 8 C 0.006 3.994 9 N -0.354 5.354 10 C 0.036 3.964 11 C -0.108 4.108 12 C -0.124 4.124 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.143 4.143 17 C 0.362 3.638 18 O -0.535 6.535 19 C -0.582 4.582 20 H 0.100 0.900 21 C -0.139 4.139 22 N -0.482 5.482 23 Si 0.828 3.172 24 H -0.218 1.218 25 H -0.227 1.227 26 H -0.214 1.214 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.161 0.839 47 H 0.170 0.830 48 H 0.163 0.837 49 H 0.142 0.858 50 H 0.109 0.891 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.797 -10.016 16.049 21.304 hybrid contribution 0.100 1.267 -0.821 1.513 sum -9.696 -8.749 15.228 20.061 Atomic orbital electron populations 1.21792 0.95663 1.01918 1.01738 1.21535 0.96088 0.96403 1.02140 1.21624 0.95387 0.97157 1.01653 1.21559 0.95353 0.95896 1.02259 1.21549 0.95305 0.97319 1.01217 1.21452 0.95456 0.94983 1.02441 1.21943 0.95854 0.97750 1.01143 1.21483 0.93938 0.81761 1.02239 1.47585 1.66931 1.14109 1.06748 1.20266 0.93415 0.98899 0.83826 1.20436 0.99050 0.93744 0.97522 1.21231 0.95065 1.00129 0.95947 1.21467 0.97520 0.95168 0.99986 1.21428 0.99683 0.94756 0.98354 1.21334 0.95811 1.00687 0.98042 1.21217 0.98457 0.96030 0.98632 1.18207 0.76423 0.84134 0.85079 1.90209 1.57078 1.19598 1.86605 1.20930 1.48928 0.95761 0.92544 0.90026 1.26099 0.90548 1.03402 0.93899 1.69582 1.38728 1.39537 1.00305 0.84856 0.77170 0.79334 0.75840 1.21825 1.22679 1.21431 0.92567 0.93190 0.92132 0.92310 0.91435 0.91876 0.93140 0.92512 0.90866 0.91853 0.94179 0.92686 0.89853 0.91526 0.95346 0.92281 0.88534 0.92498 0.87477 0.83884 0.82991 0.83656 0.85845 0.89053 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.99 0.71 -1.40 16 2 C -0.12 -1.87 5.93 30.60 0.18 -1.68 16 3 C -0.12 -2.12 5.21 30.59 0.16 -1.96 16 4 C -0.11 -2.12 5.21 30.59 0.16 -1.96 16 5 C -0.12 -2.69 5.21 30.59 0.16 -2.53 16 6 C -0.11 -2.58 5.21 30.59 0.16 -2.42 16 7 C -0.13 -4.13 5.50 30.60 0.17 -3.96 16 8 C 0.13 4.36 5.25 86.38 0.45 4.82 16 9 N -0.62 -26.00 2.47 -831.22 -2.05 -28.05 16 10 C 0.16 5.60 5.53 85.63 0.47 6.08 16 11 C -0.11 -3.59 5.37 -19.87 -0.11 -3.70 16 12 C -0.11 -2.75 7.81 22.27 0.17 -2.58 16 13 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 14 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 15 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 16 C -0.12 -4.73 9.56 22.27 0.21 -4.52 16 17 C 0.55 29.62 7.11 86.36 0.61 30.23 16 18 O -0.64 -37.44 11.70 -4.32 -0.05 -37.49 16 19 C -0.55 -31.15 9.12 24.83 0.23 -30.92 16 20 H 0.08 4.69 6.28 -2.91 -0.02 4.67 16 21 C 0.08 4.41 5.52 85.30 0.47 4.88 16 22 N -0.85 -49.10 13.92 21.83 0.30 -48.80 16 23 Si 1.00 53.61 25.92 68.60 1.78 55.39 16 24 H -0.29 -16.20 7.11 99.48 0.71 -15.50 16 25 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 26 H -0.29 -16.45 6.84 99.48 0.68 -15.77 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 2.05 5.99 -2.39 -0.01 2.04 16 41 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 42 H 0.06 2.27 6.10 -2.39 -0.01 2.25 16 43 H 0.10 2.45 7.83 -2.39 -0.02 2.43 16 44 H 0.06 2.27 7.44 -2.39 -0.02 2.25 16 45 H 0.11 2.84 7.80 -2.39 -0.02 2.83 16 46 H 0.14 2.92 8.05 -2.91 -0.02 2.90 16 47 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 48 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 49 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 50 H 0.09 4.07 7.37 -2.91 -0.02 4.05 16 51 H 0.29 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -70.06 405.85 5.71 -64.36 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.84 Total: 15.96 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.89 Total: -21.35 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.75 Total: -76.85 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.05 Total: -37.49 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.78 Total: 55.39 kcal Total: -70.06 5.71 -64.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773630548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.759 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds