Wall clock time and date at job start Tue Mar 31 2020 12:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 C 1.52996 * 109.46770 * 240.00407 * 2 1 3 5 5 C 1.52998 * 109.47241 * 120.00292 * 2 1 3 6 6 C 1.53005 * 109.47237 * 70.54256 * 5 2 1 7 7 C 1.52994 * 109.47227 * 192.73467 * 6 5 2 8 8 C 1.53007 * 109.46995 * 72.73177 * 6 5 2 9 9 N 1.46499 * 109.46730 * 312.73677 * 6 5 2 10 10 C 1.34780 * 119.99648 * 194.78517 * 9 6 5 11 11 O 1.21277 * 120.00163 * 359.97438 * 10 9 6 12 12 C 1.50705 * 119.99989 * 179.97438 * 10 9 6 13 13 C 1.50699 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.37639 * 120.12938 * 265.30631 * 13 12 10 15 15 C 1.38605 * 120.24951 * 180.31712 * 14 13 12 16 16 C 1.38660 * 120.49967 * 359.67152 * 15 14 13 17 17 C 1.37594 * 120.24874 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12696 * 84.99866 * 13 12 10 19 19 C 1.41396 * 120.24287 * 359.97438 * 18 13 12 20 20 H 1.08003 * 120.00089 * 14.16655 * 19 18 13 21 21 C 1.39947 * 119.99659 * 194.15677 * 19 18 13 22 22 N 1.30825 * 120.00148 * 32.42008 * 21 19 18 23 23 Si 1.86807 * 119.99796 * 212.41260 * 21 19 18 24 24 H 1.48493 * 109.47054 * 265.00636 * 23 21 19 25 25 H 1.48497 * 109.47200 * 25.00906 * 23 21 19 26 26 H 1.48500 * 109.46834 * 145.00931 * 23 21 19 27 27 H 1.09003 * 109.46886 * 263.43561 * 1 2 3 28 28 H 1.09000 * 109.47188 * 23.43153 * 1 2 3 29 29 H 1.08993 * 109.47268 * 143.43703 * 1 2 3 30 30 H 1.08997 * 109.47370 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47359 * 300.00326 * 3 2 1 32 32 H 1.09002 * 109.47093 * 60.00467 * 3 2 1 33 33 H 1.09001 * 109.47366 * 331.01940 * 4 2 1 34 34 H 1.08997 * 109.47530 * 91.02180 * 4 2 1 35 35 H 1.09003 * 109.47451 * 211.01939 * 4 2 1 36 36 H 1.08996 * 109.47179 * 310.53955 * 5 2 1 37 37 H 1.09002 * 109.47012 * 190.54190 * 5 2 1 38 38 H 1.08995 * 109.47128 * 185.04946 * 7 6 5 39 39 H 1.08998 * 109.46811 * 305.05241 * 7 6 5 40 40 H 1.09005 * 109.47127 * 65.05264 * 7 6 5 41 41 H 1.09000 * 109.46950 * 266.38601 * 8 6 5 42 42 H 1.09002 * 109.46909 * 26.38940 * 8 6 5 43 43 H 1.08999 * 109.46649 * 146.39240 * 8 6 5 44 44 H 0.97001 * 120.00424 * 14.77789 * 9 6 5 45 45 H 1.08999 * 109.47258 * 59.99661 * 12 10 9 46 46 H 1.09006 * 109.47051 * 300.00143 * 12 10 9 47 47 H 1.08008 * 119.87317 * 0.02562 * 14 13 12 48 48 H 1.08003 * 119.75200 * 179.69425 * 15 14 13 49 49 H 1.07998 * 119.87597 * 180.02562 * 16 15 14 50 50 H 1.08004 * 120.12746 * 180.02562 * 17 16 15 51 51 H 0.96997 * 119.99937 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.7570 -2.2197 1.1242 7 6 1.9695 -2.8938 2.4811 8 6 2.7079 -2.8342 0.0949 9 7 0.3722 -2.4206 0.6906 10 6 -0.1971 -3.6377 0.7960 11 8 0.4372 -4.5667 1.2492 12 6 -1.6220 -3.8442 0.3505 13 6 -2.0142 -5.2823 0.5721 14 6 -1.9024 -6.1946 -0.4524 15 6 -2.2686 -7.5165 -0.2532 16 6 -2.7446 -7.9368 0.9794 17 6 -2.8589 -7.0435 2.0197 18 6 -2.4900 -5.6988 1.8289 19 6 -2.6024 -4.7720 2.8908 20 1 -2.5465 -3.7121 2.6907 21 6 -2.7864 -5.2280 4.2010 22 7 -2.2550 -6.3619 4.5797 23 14 -3.7904 -4.2174 5.4094 24 1 -2.8820 -3.3600 6.2124 25 1 -4.7479 -3.3617 4.6635 26 1 -4.5396 -5.1271 6.3129 27 1 -0.3633 -0.1175 1.0210 28 1 -0.3633 0.9429 -0.4086 29 1 -0.3633 -0.8254 -0.6121 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.3134 -1.4735 -1.5566 34 1 2.1783 0.0004 -2.0544 35 1 2.9914 -1.2044 -1.0271 36 1 1.5314 -0.3276 2.1292 37 1 3.1137 -0.5613 1.3482 38 1 1.8557 -3.9724 2.3728 39 1 2.9719 -2.6690 2.8454 40 1 1.2323 -2.5202 3.1918 41 1 2.2257 -2.8476 -0.8826 42 1 3.6198 -2.2394 0.0422 43 1 2.9553 -3.8533 0.3919 44 1 -0.1351 -1.6776 0.3278 45 1 -1.7100 -3.6031 -0.7088 46 1 -2.2807 -3.1945 0.9270 47 1 -1.5323 -5.8783 -1.4165 48 1 -2.1822 -8.2246 -1.0641 49 1 -3.0267 -8.9693 1.1236 50 1 -3.2294 -7.3731 2.9791 51 1 -2.3822 -6.6778 5.4879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776776289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:24 Heat of formation + Delta-G solvation = 4.756172 kcal Electronic energy + Delta-G solvation = -28432.841262 eV Core-core repulsion = 24911.960880 eV Total energy + Delta-G solvation = -3520.880382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48929 -38.19184 -37.00216 -34.29710 -33.64482 -32.26569 -31.07712 -29.42881 -28.68643 -27.66284 -26.68569 -26.40830 -25.78633 -24.89560 -21.25073 -20.86129 -19.54147 -19.25138 -18.78394 -17.17296 -16.38319 -15.77967 -15.35945 -14.76683 -14.59368 -14.49316 -14.13466 -13.98368 -13.84907 -13.52785 -13.45080 -13.01408 -12.81393 -12.59006 -12.52748 -12.10328 -11.86563 -11.74555 -11.66430 -11.53633 -11.52844 -11.38546 -11.23811 -11.07444 -11.00888 -10.76389 -10.72887 -10.70140 -10.64230 -10.53723 -10.39608 -9.88712 -9.38980 -9.37329 -8.86212 -8.53759 -8.37429 -7.37975 -7.21095 -6.82354 -4.20822 2.83111 3.05786 3.07978 3.11204 3.35642 3.63158 3.92958 3.94250 4.55861 4.59338 4.61916 4.65967 5.02889 5.23228 5.31049 5.39289 5.43237 5.51453 5.59947 5.65541 5.67645 5.73265 5.82619 5.83282 5.89618 5.91726 5.99211 6.04791 6.08343 6.12970 6.16491 6.22399 6.26172 6.36572 6.37236 6.40386 6.48735 6.59836 6.62684 6.87573 6.93199 7.10853 7.26285 7.37028 7.50902 7.70115 8.01278 8.10883 8.23280 8.30895 8.37360 8.70394 8.95632 9.10402 9.22133 10.11971 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.004511 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.241669 B = 6205.703842 C = 7273.483106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.162 4.162 5 C -0.112 4.112 6 C 0.177 3.823 7 C -0.168 4.168 8 C -0.161 4.161 9 N -0.755 5.755 10 C 0.511 3.489 11 O -0.510 6.510 12 C -0.071 4.071 13 C -0.189 4.189 14 C -0.072 4.072 15 C -0.256 4.256 16 C -0.098 4.098 17 C -0.185 4.185 18 C 0.131 3.869 19 C -0.458 4.458 20 H 0.077 0.923 21 C 0.088 3.912 22 N -0.762 5.762 23 Si 0.890 3.110 24 H -0.271 1.271 25 H -0.258 1.258 26 H -0.274 1.274 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.401 0.599 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.112 0.888 51 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 13.895 -6.342 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.219 4.219 5 C -0.149 4.149 6 C 0.091 3.909 7 C -0.226 4.226 8 C -0.219 4.219 9 N -0.425 5.425 10 C 0.298 3.702 11 O -0.383 6.383 12 C -0.111 4.111 13 C -0.191 4.191 14 C -0.090 4.090 15 C -0.276 4.276 16 C -0.116 4.116 17 C -0.204 4.204 18 C 0.129 3.871 19 C -0.486 4.486 20 H 0.095 0.905 21 C -0.133 4.133 22 N -0.385 5.385 23 Si 0.714 3.286 24 H -0.196 1.196 25 H -0.182 1.182 26 H -0.199 1.199 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.130 0.870 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.788 13.075 -5.814 15.838 hybrid contribution -0.581 0.704 0.586 1.085 sum 6.207 13.779 -5.228 15.991 Atomic orbital electron populations 1.22411 0.95455 1.01780 1.02675 1.20543 0.95115 0.95464 0.95836 1.21937 1.00893 0.95178 1.01586 1.22708 1.02861 1.00107 0.96222 1.22125 1.01480 0.94086 0.97250 1.20117 0.82688 0.93529 0.94610 1.22424 0.99974 1.05279 0.94889 1.22754 0.98400 1.01102 0.99677 1.47809 1.13987 1.13112 1.67579 1.21066 0.89293 0.82182 0.77677 1.90574 1.63690 1.41743 1.42315 1.20263 0.92728 0.98025 1.00046 1.18836 1.11734 0.92623 0.95884 1.20247 0.98931 0.93507 0.96358 1.20198 1.14723 0.95482 0.97163 1.20604 0.99987 0.97199 0.93848 1.21180 1.06917 0.94102 0.98182 1.17242 0.86959 0.92077 0.90867 1.19444 1.43990 0.94435 0.90743 0.90474 1.25918 0.93248 0.94788 0.99377 1.69974 1.29782 1.19901 1.18841 0.86601 0.81052 0.80885 0.80077 1.19636 1.18170 1.19908 0.91249 0.91886 0.90851 0.92725 0.92676 0.92722 0.91958 0.93456 0.90494 0.91434 0.90875 0.88158 0.93475 0.93036 0.91460 0.92448 0.92352 0.74846 0.91306 0.89507 0.90039 0.89960 0.89879 0.87031 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 7.33 37.16 0.27 -1.28 16 2 C -0.07 -0.64 0.77 -154.51 -0.12 -0.76 16 3 C -0.14 -1.08 8.05 37.16 0.30 -0.78 16 4 C -0.16 -1.53 7.03 37.16 0.26 -1.26 16 5 C -0.11 -1.21 3.68 -26.73 -0.10 -1.31 16 6 C 0.18 2.49 0.66 -131.82 -0.09 2.40 16 7 C -0.17 -2.81 7.76 37.15 0.29 -2.52 16 8 C -0.16 -2.16 7.01 37.16 0.26 -1.90 16 9 N -0.76 -11.61 4.16 -47.60 -0.20 -11.81 16 10 C 0.51 10.28 7.34 -10.98 -0.08 10.20 16 11 O -0.51 -12.48 13.03 5.56 0.07 -12.40 16 12 C -0.07 -1.42 5.29 -29.03 -0.15 -1.57 16 13 C -0.19 -4.63 4.43 -103.91 -0.46 -5.09 16 14 C -0.07 -1.71 9.66 -39.66 -0.38 -2.09 16 15 C -0.26 -6.16 10.05 -39.29 -0.39 -6.56 16 16 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 17 C -0.18 -5.01 8.84 -38.88 -0.34 -5.35 16 18 C 0.13 3.54 5.65 -106.83 -0.60 2.93 16 19 C -0.46 -12.09 8.50 -37.74 -0.32 -12.41 16 20 H 0.08 1.94 6.29 -52.48 -0.33 1.61 16 21 C 0.09 2.24 4.89 -17.34 -0.08 2.15 16 22 N -0.76 -20.10 11.28 55.55 0.63 -19.48 16 23 Si 0.89 18.53 29.66 -169.99 -5.04 13.49 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H 0.07 0.70 7.07 -51.93 -0.37 0.33 16 28 H 0.06 0.50 7.73 -51.93 -0.40 0.10 16 29 H 0.07 0.72 5.37 -51.93 -0.28 0.44 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.65 5.73 -51.93 -0.30 0.35 16 34 H 0.05 0.39 7.80 -51.93 -0.41 -0.01 16 35 H 0.08 0.73 4.52 -51.93 -0.23 0.49 16 36 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 37 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 38 H 0.10 2.08 5.42 -51.93 -0.28 1.79 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.89 5.50 -51.93 -0.29 0.60 16 42 H 0.06 0.62 6.23 -51.93 -0.32 0.30 16 43 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 44 H 0.40 5.16 2.36 -58.35 -0.14 5.02 16 45 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 46 H 0.09 1.68 6.48 -51.93 -0.34 1.34 16 47 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 48 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 49 H 0.08 1.87 8.06 -52.49 -0.42 1.45 16 50 H 0.11 3.09 6.02 -52.48 -0.32 2.77 16 51 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -30.52 377.38 -9.13 -39.65 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -8.14 Total: 12.91 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.15 Total: -28.06 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.43 Total: -31.28 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.04 Total: 13.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.52 -9.13 -39.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776776289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.408 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds