Wall clock time and date at job start Tue Mar 31 2020 12:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.52998 * 109.52146 * 302.18448 * 3 2 1 5 5 C 1.53001 * 109.47256 * 300.52728 * 4 3 2 6 6 C 1.53115 * 109.52489 * 182.05854 * 3 2 1 7 7 C 1.53049 * 109.27562 * 182.50584 * 6 3 2 8 8 N 1.46847 * 109.57574 * 59.07809 * 7 6 3 9 9 C 1.46897 * 110.99874 * 174.19385 * 8 7 6 10 10 C 1.50705 * 109.47224 * 314.21467 * 9 8 7 11 11 C 1.38309 * 119.92647 * 269.72974 * 10 9 8 12 12 C 1.38103 * 120.06548 * 179.72622 * 11 10 9 13 13 C 1.38880 * 119.92613 * 0.54296 * 12 11 10 14 14 O 1.35760 * 120.06286 * 179.74962 * 13 12 11 15 15 C 1.34833 * 116.99458 * 185.49334 * 14 13 12 16 16 H 1.07994 * 120.00426 * 5.15779 * 15 14 13 17 17 C 1.38655 * 119.99423 * 185.15860 * 15 14 13 18 18 N 1.31554 * 120.00176 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47334 * 89.99697 * 19 17 15 21 21 H 1.48493 * 109.47230 * 209.99592 * 19 17 15 22 22 H 1.48503 * 109.47288 * 330.00085 * 19 17 15 23 23 C 1.38871 * 119.86750 * 359.72565 * 13 12 11 24 24 C 1.38105 * 119.92963 * 0.02562 * 23 13 12 25 25 C 1.46846 * 111.20170 * 298.29317 * 8 7 6 26 26 C 1.53039 * 109.52242 * 61.74032 * 25 8 7 27 27 H 1.08994 * 109.46698 * 182.77027 * 1 2 3 28 28 H 1.08993 * 109.47271 * 302.77525 * 1 2 3 29 29 H 1.08999 * 109.46983 * 62.77600 * 1 2 3 30 30 H 1.09003 * 109.47554 * 240.00133 * 2 1 3 31 31 H 1.09000 * 109.47110 * 119.99855 * 2 1 3 32 32 H 1.09000 * 109.47385 * 60.52895 * 4 3 2 33 33 H 1.09003 * 109.47526 * 180.53127 * 4 3 2 34 34 H 1.08995 * 109.46968 * 298.69165 * 5 4 3 35 35 H 1.09005 * 109.47085 * 58.68853 * 5 4 3 36 36 H 1.08996 * 109.47099 * 178.68530 * 5 4 3 37 37 H 1.09002 * 109.50160 * 302.37562 * 6 3 2 38 38 H 1.08993 * 109.50622 * 62.49827 * 6 3 2 39 39 H 1.09003 * 109.40553 * 299.06295 * 7 6 3 40 40 H 1.09000 * 109.45484 * 179.12806 * 7 6 3 41 41 H 1.08995 * 109.47086 * 74.21000 * 9 8 7 42 42 H 1.08996 * 109.47481 * 194.21382 * 9 8 7 43 43 H 1.07994 * 119.96420 * 359.97438 * 11 10 9 44 44 H 1.07995 * 120.03447 * 180.26736 * 12 11 10 45 45 H 0.96998 * 120.00011 * 180.02562 * 18 17 15 46 46 H 1.07999 * 120.03869 * 179.97438 * 23 13 12 47 47 H 1.08000 * 119.96297 * 180.02562 * 24 23 13 48 48 H 1.08997 * 109.46079 * 301.72622 * 25 8 7 49 49 H 1.08997 * 109.45410 * 181.75138 * 25 8 7 50 50 H 1.08999 * 109.49842 * 180.88005 * 26 25 8 51 51 H 1.09000 * 109.53334 * 60.78247 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4863 2.1806 -1.2204 5 6 1.9400 1.4684 -2.4964 6 6 3.5703 1.4442 -0.0518 7 6 4.0764 2.8872 0.0115 8 7 3.6087 3.5186 1.2521 9 6 4.1891 4.8586 1.4120 10 6 5.6653 4.8055 1.1137 11 6 6.5664 4.5518 2.1318 12 6 7.9194 4.4969 1.8607 13 6 8.3757 4.7081 0.5661 14 8 9.7055 4.6598 0.2973 15 6 10.0894 4.9855 -0.9535 16 1 9.3618 5.3480 -1.6645 17 6 11.4183 4.8547 -1.3270 18 7 12.3046 4.4135 -0.4607 19 14 11.9503 5.3065 -3.0596 20 1 12.3379 6.7394 -3.1007 21 1 13.1104 4.4684 -3.4556 22 1 10.8254 5.0709 -4.0001 23 6 7.4688 4.9681 -0.4530 24 6 6.1166 5.0166 -0.1764 25 6 2.1420 3.5711 1.3011 26 6 1.5783 2.1485 1.2779 27 1 -0.3632 -1.0264 0.0497 28 1 -0.3633 0.5563 0.8640 29 1 -0.3633 0.4701 -0.9138 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.3972 2.1890 -1.1767 33 1 1.8577 3.2054 -1.2248 34 1 3.0285 1.4804 -2.5517 35 1 1.5884 0.4368 -2.4813 36 1 1.5263 1.9806 -3.3650 37 1 3.9638 0.8841 0.7965 38 1 3.9035 0.9811 -0.9805 39 1 3.6947 3.4428 -0.8451 40 1 5.1662 2.8910 -0.0096 41 1 3.7037 5.5493 0.7226 42 1 4.0374 5.2005 2.4358 43 1 6.2112 4.3924 3.1392 44 1 8.6222 4.2945 2.6553 45 1 13.2343 4.3224 -0.7219 46 1 7.8207 5.1332 -1.4607 47 1 5.4109 5.2184 -0.9686 48 1 1.7694 4.1235 0.4385 49 1 1.8270 4.0717 2.2166 50 1 0.4892 2.1883 1.2985 51 1 1.9389 1.5993 2.1476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776845483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:25 Heat of formation + Delta-G solvation = -18.330274 kcal Electronic energy + Delta-G solvation = -27280.078196 eV Core-core repulsion = 23758.196710 eV Total energy + Delta-G solvation = -3521.881486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.30239 -39.00901 -37.15353 -35.53314 -32.37657 -31.74342 -31.34864 -30.53418 -30.10232 -28.87740 -25.95462 -25.21297 -24.06185 -23.39705 -22.68805 -21.94335 -20.93501 -20.12913 -17.98471 -17.87661 -16.90059 -16.22893 -15.47524 -15.19462 -15.09282 -14.79670 -14.56713 -14.27589 -13.97778 -13.82730 -13.64457 -13.44048 -13.34126 -12.94387 -12.66598 -12.60780 -12.37785 -12.22121 -11.98653 -11.91986 -11.77756 -11.66058 -11.47393 -11.36951 -11.20053 -11.08628 -10.74162 -10.67359 -10.59623 -10.55838 -10.41847 -10.25457 -10.07627 -9.92915 -9.35395 -8.82700 -8.15597 -8.07515 -7.14545 -6.45270 -4.03907 2.22914 2.29278 3.12241 3.13000 3.17812 3.96380 4.08674 4.52807 4.59744 4.65083 4.68404 5.01724 5.08134 5.11057 5.15911 5.20369 5.22581 5.28315 5.30702 5.39027 5.44747 5.49297 5.51837 5.57260 5.65377 5.68125 5.73698 5.75655 5.78641 5.84729 5.87231 5.92635 5.96985 5.97458 6.03357 6.06805 6.12499 6.22392 6.23147 6.32032 6.37366 6.45127 6.49681 6.72056 6.91324 7.04895 7.23826 7.25361 7.35883 7.41778 7.45436 7.83861 7.99776 9.00466 9.71128 10.72833 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002858 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.126343 B = 9795.414177 C =10608.565660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.057 4.057 4 C -0.117 4.117 5 C -0.156 4.156 6 C -0.107 4.107 7 C 0.053 3.947 8 N -0.531 5.531 9 C 0.113 3.887 10 C -0.184 4.184 11 C -0.053 4.053 12 C -0.195 4.195 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.065 4.065 25 C 0.054 3.946 26 C -0.104 4.104 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.031 0.969 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.334 -4.901 0.049 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.057 4.057 4 C -0.155 4.155 5 C -0.213 4.213 6 C -0.145 4.145 7 C -0.074 4.074 8 N -0.256 5.256 9 C -0.013 4.013 10 C -0.185 4.185 11 C -0.072 4.072 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.253 4.253 24 C -0.084 4.084 25 C -0.074 4.074 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.119 0.881 48 H 0.049 0.951 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.722 -5.293 0.579 22.366 hybrid contribution 0.007 0.750 -1.640 1.803 sum -21.715 -4.544 -1.061 22.211 Atomic orbital electron populations 1.21871 0.96243 1.01157 1.01895 1.21594 0.95612 0.96040 1.01913 1.20613 0.95579 0.94777 0.94725 1.21685 1.00170 0.99430 0.94172 1.21883 1.01822 1.00522 0.97090 1.21697 0.93903 0.96911 1.01995 1.22197 1.01620 0.93921 0.89693 1.62053 1.06401 1.20432 1.36689 1.20799 0.91647 0.88495 1.00385 1.19092 0.93643 1.11824 0.93953 1.20466 0.91778 0.97088 0.97826 1.20214 0.95378 1.11072 0.94754 1.19410 0.84962 0.92317 0.93121 1.83997 1.16803 1.75071 1.32228 1.21305 0.94079 1.44248 0.87107 0.89159 1.25281 0.94785 0.96647 0.99796 1.70036 1.02761 1.42430 1.34507 0.85727 0.78734 0.78643 0.80423 1.19886 1.20245 1.19221 1.21116 0.92934 1.11298 0.99978 1.20594 0.94695 0.97917 0.95165 1.22100 0.88234 0.96867 1.00245 1.21661 0.99350 0.95467 0.97693 0.93257 0.92549 0.92609 0.91841 0.92097 0.92130 0.91971 0.92249 0.92545 0.93283 0.91332 0.91549 0.95316 0.89277 0.95300 0.90900 0.86997 0.86591 0.92018 0.85687 0.88087 0.95135 0.91316 0.91789 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.11 -0.97 4.57 -26.73 -0.12 -1.09 16 3 C -0.06 -0.54 0.32 -154.39 -0.05 -0.59 16 4 C -0.12 -1.08 3.98 -26.73 -0.11 -1.18 16 5 C -0.16 -1.39 9.22 37.16 0.34 -1.05 16 6 C -0.11 -1.24 4.61 -26.65 -0.12 -1.37 16 7 C 0.05 0.72 4.33 -3.83 -0.02 0.70 16 8 N -0.53 -6.95 4.80 -236.11 -1.13 -8.09 16 9 C 0.11 1.58 5.43 -4.98 -0.03 1.55 16 10 C -0.18 -3.11 4.13 -104.57 -0.43 -3.55 16 11 C -0.05 -0.95 9.69 -39.60 -0.38 -1.33 16 12 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 14 O -0.18 -5.08 9.76 0.01 0.00 -5.08 16 15 C -0.39 -10.93 9.45 30.89 0.29 -10.64 16 16 H 0.09 2.34 5.28 -52.49 -0.28 2.06 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 19 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.23 -5.05 9.14 -39.40 -0.36 -5.41 16 24 C -0.06 -1.18 7.78 -39.61 -0.31 -1.48 16 25 C 0.05 0.57 5.18 -3.83 -0.02 0.55 16 26 C -0.10 -0.99 4.52 -26.65 -0.12 -1.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 6.41 -51.93 -0.33 0.07 16 29 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 30 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.51 6.49 -51.93 -0.34 0.17 16 33 H 0.06 0.64 4.93 -51.93 -0.26 0.39 16 34 H 0.06 0.58 6.47 -51.93 -0.34 0.24 16 35 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 39 H 0.03 0.38 6.50 -51.93 -0.34 0.05 16 40 H 0.09 1.45 5.64 -51.93 -0.29 1.16 16 41 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 42 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 47 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 48 H 0.03 0.33 6.53 -51.93 -0.34 -0.01 16 49 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -29.23 376.52 -9.83 -39.07 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.27 Total: 4.33 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.84 Total: -26.83 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.37 Total: -32.67 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.23 -9.83 -39.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776845483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.736 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds