Wall clock time and date at job start Tue Mar 31 2020 12:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 C 1.53006 * 109.46772 * 119.99434 * 2 1 3 5 5 C 1.53007 * 109.46900 * 172.92550 * 4 2 1 6 6 C 1.52998 * 109.46827 * 190.17632 * 5 4 2 7 7 C 1.52996 * 109.47035 * 70.17793 * 5 4 2 8 8 C 1.53006 * 109.47013 * 310.17784 * 5 4 2 9 9 N 1.46501 * 109.46711 * 180.02562 * 8 5 4 10 10 C 1.34777 * 119.99471 * 180.02562 * 9 8 5 11 11 O 1.21272 * 120.00427 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.50697 * 109.47392 * 179.97438 * 12 10 9 14 14 C 1.37644 * 120.12843 * 265.31130 * 13 12 10 15 15 C 1.38621 * 120.24492 * 180.31953 * 14 13 12 16 16 C 1.38657 * 120.49864 * 359.66488 * 15 14 13 17 17 C 1.37590 * 120.25335 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12875 * 85.00072 * 13 12 10 19 19 C 1.41400 * 120.23923 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99826 * 36.60849 * 19 18 13 21 21 C 1.39944 * 119.99777 * 216.59985 * 19 18 13 22 22 N 1.30822 * 120.00342 * 1.47638 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 181.47441 * 21 19 18 24 24 H 1.48501 * 109.47429 * 265.02988 * 23 21 19 25 25 H 1.48500 * 109.47343 * 25.02659 * 23 21 19 26 26 H 1.48501 * 109.47367 * 145.02613 * 23 21 19 27 27 H 1.09005 * 109.47475 * 300.00448 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00095 * 1 2 3 29 29 H 1.09000 * 109.47581 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47579 * 239.99269 * 2 1 3 31 31 H 1.08997 * 109.47324 * 213.91152 * 3 2 1 32 32 H 1.09004 * 109.46640 * 333.90473 * 3 2 1 33 33 H 1.08993 * 109.47606 * 93.90428 * 3 2 1 34 34 H 1.08990 * 109.47034 * 52.93112 * 4 2 1 35 35 H 1.08995 * 109.47297 * 292.92171 * 4 2 1 36 36 H 1.09003 * 109.46809 * 178.94986 * 6 5 4 37 37 H 1.08998 * 109.47422 * 298.94970 * 6 5 4 38 38 H 1.09000 * 109.47167 * 58.95298 * 6 5 4 39 39 H 1.09001 * 109.47147 * 279.64282 * 7 5 4 40 40 H 1.08999 * 109.47618 * 39.64452 * 7 5 4 41 41 H 1.09004 * 109.47306 * 159.64653 * 7 5 4 42 42 H 1.08997 * 109.47006 * 60.00319 * 8 5 4 43 43 H 1.09001 * 109.46786 * 299.99996 * 8 5 4 44 44 H 0.97002 * 120.00214 * 359.97438 * 9 8 5 45 45 H 1.09008 * 109.47127 * 59.99874 * 12 10 9 46 46 H 1.09001 * 109.47411 * 300.00198 * 12 10 9 47 47 H 1.07998 * 119.87658 * 0.02562 * 14 13 12 48 48 H 1.08000 * 119.74591 * 179.69027 * 15 14 13 49 49 H 1.08002 * 119.86818 * 180.02562 * 16 15 14 50 50 H 1.08002 * 120.13026 * 180.02562 * 17 16 15 51 51 H 0.96998 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5596 -0.8769 1.1638 6 6 4.0398 -1.8118 2.2756 7 6 4.2225 0.4923 1.3269 8 6 3.9359 -1.4669 -0.1969 9 7 5.3910 -1.6166 -0.2785 10 6 5.9550 -2.1202 -1.3942 11 8 5.2580 -2.4499 -2.3303 12 6 7.4518 -2.2736 -1.4785 13 6 7.8226 -2.8549 -2.8185 14 6 7.9998 -4.2128 -2.9575 15 6 8.3474 -4.7493 -4.1874 16 6 8.5136 -3.9277 -5.2920 17 6 8.3353 -2.5682 -5.1778 18 6 7.9825 -2.0124 -3.9340 19 6 7.7960 -0.6167 -3.8047 20 1 8.1088 -0.1113 -2.9030 21 6 7.2062 0.1097 -4.8454 22 7 6.8012 -0.5067 -5.9258 23 14 6.9973 1.9596 -4.6917 24 1 5.6359 2.2635 -4.1822 25 1 8.0102 2.4954 -3.7471 26 1 7.1798 2.5908 -6.0235 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 2.9652 1.5007 -0.5733 32 1 1.2909 2.0927 -0.4521 33 1 2.2271 1.7618 1.0252 34 1 1.5770 -1.7057 1.3149 35 1 1.7836 -0.1394 2.1348 36 1 5.1202 -1.9375 2.2032 37 1 3.7882 -1.3824 3.2454 38 1 3.5534 -2.7815 2.1704 39 1 4.1828 1.0304 0.3798 40 1 3.6949 1.0628 2.0912 41 1 5.2623 0.3593 1.6258 42 1 3.5938 -0.8009 -0.9889 43 1 3.4636 -2.4424 -0.3130 44 1 5.9485 -1.3525 0.4700 45 1 7.7939 -2.9400 -0.6866 46 1 7.9242 -1.2982 -1.3619 47 1 7.8723 -4.8621 -2.1039 48 1 8.4893 -5.8154 -4.2862 49 1 8.7840 -4.3567 -6.2455 50 1 8.4648 -1.9302 -6.0395 51 1 6.3928 -0.0031 -6.6473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776978103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:31 Heat of formation + Delta-G solvation = -45.390181 kcal Electronic energy + Delta-G solvation = -27608.811472 eV Core-core repulsion = 24085.756580 eV Total energy + Delta-G solvation = -3523.054891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.74764 -38.42864 -37.13903 -34.70839 -33.42619 -32.53818 -31.54783 -29.38077 -28.41964 -27.45344 -26.90602 -26.25444 -25.47000 -24.59488 -20.85940 -20.51868 -20.39989 -19.39871 -18.73612 -17.08963 -16.25401 -16.05197 -15.34498 -15.13169 -14.85846 -14.44648 -14.31321 -14.26058 -13.82360 -13.48943 -13.42361 -13.11674 -12.88862 -12.64579 -12.57183 -12.48565 -12.14898 -11.91950 -11.89062 -11.71496 -11.69519 -11.46221 -11.07574 -11.06163 -10.92022 -10.83730 -10.72319 -10.63319 -10.57244 -10.39828 -10.31724 -10.15260 -9.44340 -9.33416 -9.06428 -8.97702 -8.47570 -7.26567 -7.11226 -6.51957 -4.26717 2.86460 3.02130 3.12795 3.15708 3.29772 3.55930 3.85550 4.04865 4.47302 4.65320 4.71796 4.83604 4.92818 5.00824 5.11393 5.38544 5.44779 5.51492 5.54195 5.57281 5.65289 5.69346 5.70814 5.80598 5.81811 5.84004 5.86738 5.93382 5.97137 6.02990 6.06984 6.12126 6.18263 6.24323 6.29775 6.32648 6.37686 6.41022 6.42719 6.56112 6.81829 6.99998 7.23867 7.32459 7.47920 7.72572 7.95184 8.07837 8.15657 8.16999 8.41239 8.72599 9.02991 9.08025 9.08782 10.44316 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004255 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.352007 B = 6579.127175 C = 7905.558986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.154 4.154 4 C -0.098 4.098 5 C -0.076 4.076 6 C -0.140 4.140 7 C -0.152 4.152 8 C 0.130 3.870 9 N -0.744 5.744 10 C 0.515 3.485 11 O -0.514 6.514 12 C -0.070 4.070 13 C -0.167 4.167 14 C -0.089 4.089 15 C -0.229 4.229 16 C -0.112 4.112 17 C -0.148 4.148 18 C 0.130 3.870 19 C -0.468 4.468 20 H 0.072 0.928 21 C 0.078 3.922 22 N -0.808 5.808 23 Si 0.903 3.097 24 H -0.273 1.273 25 H -0.263 1.263 26 H -0.278 1.278 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.392 0.608 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.117 0.883 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 2.956 15.245 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.211 4.211 4 C -0.136 4.136 5 C -0.076 4.076 6 C -0.198 4.198 7 C -0.209 4.209 8 C 0.006 3.994 9 N -0.400 5.400 10 C 0.302 3.698 11 O -0.386 6.386 12 C -0.110 4.110 13 C -0.169 4.169 14 C -0.108 4.108 15 C -0.249 4.249 16 C -0.130 4.130 17 C -0.167 4.167 18 C 0.128 3.872 19 C -0.499 4.499 20 H 0.090 0.910 21 C -0.138 4.138 22 N -0.435 5.435 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.187 1.187 26 H -0.203 1.203 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.226 0.774 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.135 0.865 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.873 2.759 14.299 16.554 hybrid contribution -0.105 0.943 0.303 0.996 sum -7.978 3.702 14.602 17.046 Atomic orbital electron populations 1.21869 0.95460 1.01506 1.01435 1.21282 0.95462 0.96731 0.99076 1.22242 1.01151 0.95781 1.01879 1.21717 0.93583 1.00523 0.97754 1.20788 0.95835 0.95996 0.94975 1.21887 1.01259 0.99016 0.97624 1.22300 0.99888 0.96002 1.02689 1.21412 0.81633 1.00408 0.95938 1.46146 1.07132 1.68024 1.18685 1.20993 0.91233 0.76281 0.81265 1.90702 1.64157 1.47487 1.36296 1.20260 0.91285 1.02171 0.97258 1.19150 1.10565 0.92729 0.94439 1.20322 1.00476 0.93975 0.95996 1.20361 1.13363 0.97199 0.93935 1.20719 1.01298 0.94671 0.96343 1.21353 1.02945 0.93359 0.99067 1.17356 0.86655 0.92903 0.90248 1.19345 1.36526 0.92477 1.01563 0.90975 1.25727 0.93751 0.99940 0.94341 1.69766 1.31028 1.37159 1.05574 0.86383 0.79278 0.82984 0.78478 1.19820 1.18740 1.20286 0.93018 0.92770 0.92869 0.90236 0.91966 0.93254 0.92263 0.91889 0.91676 0.92441 0.92670 0.92568 0.91004 0.92544 0.92989 0.91346 0.92337 0.77400 0.90945 0.89058 0.89704 0.89597 0.89521 0.86526 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.99 37.15 0.33 -1.00 16 2 C -0.11 -1.11 2.49 -90.62 -0.23 -1.33 16 3 C -0.15 -1.56 7.95 37.16 0.30 -1.27 16 4 C -0.10 -0.91 3.88 -26.72 -0.10 -1.01 16 5 C -0.08 -0.77 0.56 -154.50 -0.09 -0.85 16 6 C -0.14 -1.26 8.20 37.16 0.30 -0.96 16 7 C -0.15 -1.48 6.73 37.16 0.25 -1.23 16 8 C 0.13 1.83 3.82 -4.04 -0.02 1.81 16 9 N -0.74 -11.35 5.00 -60.29 -0.30 -11.65 16 10 C 0.52 10.54 7.82 -10.98 -0.09 10.45 16 11 O -0.51 -13.22 16.03 5.56 0.09 -13.13 16 12 C -0.07 -1.38 5.36 -29.04 -0.16 -1.54 16 13 C -0.17 -4.06 4.43 -103.91 -0.46 -4.53 16 14 C -0.09 -2.09 9.66 -39.66 -0.38 -2.47 16 15 C -0.23 -5.39 10.05 -39.29 -0.39 -5.78 16 16 C -0.11 -2.76 10.02 -39.66 -0.40 -3.15 16 17 C -0.15 -4.00 8.62 -38.88 -0.34 -4.34 16 18 C 0.13 3.53 5.49 -106.82 -0.59 2.94 16 19 C -0.47 -12.49 8.27 -37.74 -0.31 -12.81 16 20 H 0.07 1.81 6.61 -52.49 -0.35 1.47 16 21 C 0.08 2.04 5.36 -17.34 -0.09 1.95 16 22 N -0.81 -22.30 10.97 55.55 0.61 -21.69 16 23 Si 0.90 19.66 29.56 -169.99 -5.02 14.63 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.99 5.87 -51.93 -0.30 0.68 16 31 H 0.06 0.72 6.23 -51.93 -0.32 0.40 16 32 H 0.05 0.48 7.77 -51.93 -0.40 0.08 16 33 H 0.06 0.53 6.00 -51.93 -0.31 0.22 16 34 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 35 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 36 H 0.06 0.51 6.83 -51.93 -0.35 0.16 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.80 5.08 -51.93 -0.26 0.54 16 40 H 0.06 0.48 6.85 -51.93 -0.36 0.12 16 41 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 42 H 0.07 1.10 6.14 -51.93 -0.32 0.78 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.39 4.78 6.48 -40.82 -0.26 4.51 16 45 H 0.07 1.19 8.05 -51.92 -0.42 0.77 16 46 H 0.09 1.73 6.62 -51.93 -0.34 1.39 16 47 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 48 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 50 H 0.12 3.25 6.54 -52.49 -0.34 2.91 16 51 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -31.61 390.16 -9.69 -41.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.50 Total: 9.76 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.45 Total: -25.10 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.31 Total: -33.34 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.61 -9.69 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776978103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.081 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds