Wall clock time and date at job start Tue Mar 31 2020 12:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 C 1.53006 * 109.46772 * 119.99434 * 2 1 3 5 5 C 1.53007 * 109.46900 * 172.92550 * 4 2 1 6 6 C 1.52998 * 109.46827 * 190.17632 * 5 4 2 7 7 C 1.52996 * 109.47035 * 70.17793 * 5 4 2 8 8 C 1.53006 * 109.47013 * 310.17784 * 5 4 2 9 9 N 1.46501 * 109.46711 * 180.02562 * 8 5 4 10 10 C 1.34777 * 119.99471 * 180.02562 * 9 8 5 11 11 O 1.21272 * 120.00427 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.50697 * 109.47392 * 179.97438 * 12 10 9 14 14 C 1.37644 * 120.12843 * 265.31130 * 13 12 10 15 15 C 1.38621 * 120.24492 * 180.31953 * 14 13 12 16 16 C 1.38657 * 120.49864 * 359.66488 * 15 14 13 17 17 C 1.37590 * 120.25335 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12875 * 85.00072 * 13 12 10 19 19 C 1.41400 * 120.23923 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99826 * 36.60849 * 19 18 13 21 21 C 1.39944 * 119.99777 * 216.59985 * 19 18 13 22 22 N 1.30822 * 120.00342 * 1.47638 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 181.47441 * 21 19 18 24 24 H 1.48501 * 109.47429 * 265.02988 * 23 21 19 25 25 H 1.48500 * 109.47343 * 25.02659 * 23 21 19 26 26 H 1.48501 * 109.47367 * 145.02613 * 23 21 19 27 27 H 1.09005 * 109.47475 * 300.00448 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00095 * 1 2 3 29 29 H 1.09000 * 109.47581 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47579 * 239.99269 * 2 1 3 31 31 H 1.08997 * 109.47324 * 213.91152 * 3 2 1 32 32 H 1.09004 * 109.46640 * 333.90473 * 3 2 1 33 33 H 1.08993 * 109.47606 * 93.90428 * 3 2 1 34 34 H 1.08990 * 109.47034 * 52.93112 * 4 2 1 35 35 H 1.08995 * 109.47297 * 292.92171 * 4 2 1 36 36 H 1.09003 * 109.46809 * 178.94986 * 6 5 4 37 37 H 1.08998 * 109.47422 * 298.94970 * 6 5 4 38 38 H 1.09000 * 109.47167 * 58.95298 * 6 5 4 39 39 H 1.09001 * 109.47147 * 279.64282 * 7 5 4 40 40 H 1.08999 * 109.47618 * 39.64452 * 7 5 4 41 41 H 1.09004 * 109.47306 * 159.64653 * 7 5 4 42 42 H 1.08997 * 109.47006 * 60.00319 * 8 5 4 43 43 H 1.09001 * 109.46786 * 299.99996 * 8 5 4 44 44 H 0.97002 * 120.00214 * 359.97438 * 9 8 5 45 45 H 1.09008 * 109.47127 * 59.99874 * 12 10 9 46 46 H 1.09001 * 109.47411 * 300.00198 * 12 10 9 47 47 H 1.07998 * 119.87658 * 0.02562 * 14 13 12 48 48 H 1.08000 * 119.74591 * 179.69027 * 15 14 13 49 49 H 1.08002 * 119.86818 * 180.02562 * 16 15 14 50 50 H 1.08002 * 120.13026 * 180.02562 * 17 16 15 51 51 H 0.96998 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5596 -0.8769 1.1638 6 6 4.0398 -1.8118 2.2756 7 6 4.2225 0.4923 1.3269 8 6 3.9359 -1.4669 -0.1969 9 7 5.3910 -1.6166 -0.2785 10 6 5.9550 -2.1202 -1.3942 11 8 5.2580 -2.4499 -2.3303 12 6 7.4518 -2.2736 -1.4785 13 6 7.8226 -2.8549 -2.8185 14 6 7.9998 -4.2128 -2.9575 15 6 8.3474 -4.7493 -4.1874 16 6 8.5136 -3.9277 -5.2920 17 6 8.3353 -2.5682 -5.1778 18 6 7.9825 -2.0124 -3.9340 19 6 7.7960 -0.6167 -3.8047 20 1 8.1088 -0.1113 -2.9030 21 6 7.2062 0.1097 -4.8454 22 7 6.8012 -0.5067 -5.9258 23 14 6.9973 1.9596 -4.6917 24 1 5.6359 2.2635 -4.1822 25 1 8.0102 2.4954 -3.7471 26 1 7.1798 2.5908 -6.0235 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 2.9652 1.5007 -0.5733 32 1 1.2909 2.0927 -0.4521 33 1 2.2271 1.7618 1.0252 34 1 1.5770 -1.7057 1.3149 35 1 1.7836 -0.1394 2.1348 36 1 5.1202 -1.9375 2.2032 37 1 3.7882 -1.3824 3.2454 38 1 3.5534 -2.7815 2.1704 39 1 4.1828 1.0304 0.3798 40 1 3.6949 1.0628 2.0912 41 1 5.2623 0.3593 1.6258 42 1 3.5938 -0.8009 -0.9889 43 1 3.4636 -2.4424 -0.3130 44 1 5.9485 -1.3525 0.4700 45 1 7.7939 -2.9400 -0.6866 46 1 7.9242 -1.2982 -1.3619 47 1 7.8723 -4.8621 -2.1039 48 1 8.4893 -5.8154 -4.2862 49 1 8.7840 -4.3567 -6.2455 50 1 8.4648 -1.9302 -6.0395 51 1 6.3928 -0.0031 -6.6473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776978103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:30 Heat of formation + Delta-G solvation = -62.189566 kcal Electronic energy + Delta-G solvation = -27609.539948 eV Core-core repulsion = 24085.756580 eV Total energy + Delta-G solvation = -3523.783368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.01931 -39.81673 -38.86149 -35.81030 -35.37769 -33.82871 -33.22396 -31.32850 -29.20711 -28.99941 -27.75486 -27.12984 -27.00841 -26.17513 -22.79822 -22.15103 -21.26820 -20.99553 -19.79134 -19.00567 -17.73621 -17.34933 -17.06333 -16.48078 -16.22960 -15.77935 -15.67342 -15.30477 -15.28681 -15.05928 -14.54576 -14.40946 -14.32951 -14.13656 -13.61781 -13.53481 -13.34504 -13.28851 -12.97758 -12.87626 -12.85480 -12.80301 -12.64282 -12.55536 -12.48086 -12.43308 -12.10614 -11.69797 -11.58975 -11.45577 -11.33833 -11.27108 -11.21989 -11.00670 -10.95472 -10.67645 -9.89345 -9.17285 -9.07510 -8.47206 -6.29311 1.00043 1.13008 1.32917 1.46083 1.49010 1.95064 2.21951 2.48034 2.88746 3.61338 3.72086 3.82739 3.91988 4.09694 4.17319 4.22660 4.25130 4.39913 4.48632 4.56509 4.60284 4.64667 4.71153 4.73724 4.78734 4.81535 4.83172 4.90799 4.92836 4.96700 5.02593 5.05320 5.08602 5.09992 5.13316 5.27084 5.28895 5.33777 5.35871 5.45611 5.47250 5.54045 5.54874 5.59428 5.67803 5.82034 6.04210 6.15789 6.19488 6.46571 6.73190 6.80739 7.03631 7.12949 7.56680 8.51176 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004255 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.352007 B = 6579.127175 C = 7905.558986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.150 4.150 4 C -0.094 4.094 5 C -0.065 4.065 6 C -0.139 4.139 7 C -0.153 4.153 8 C 0.131 3.869 9 N -0.720 5.720 10 C 0.515 3.485 11 O -0.577 6.577 12 C -0.069 4.069 13 C -0.171 4.171 14 C -0.100 4.100 15 C -0.229 4.229 16 C -0.123 4.123 17 C -0.180 4.180 18 C 0.096 3.904 19 C -0.488 4.488 20 H 0.081 0.919 21 C 0.028 3.972 22 N -0.851 5.851 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.246 1.246 26 H -0.271 1.271 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.411 0.589 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.106 0.894 50 H 0.094 0.906 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 3.324 18.844 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.207 4.207 4 C -0.131 4.131 5 C -0.066 4.066 6 C -0.196 4.196 7 C -0.209 4.209 8 C 0.007 3.993 9 N -0.375 5.375 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.109 4.109 13 C -0.173 4.173 14 C -0.118 4.118 15 C -0.248 4.248 16 C -0.142 4.142 17 C -0.200 4.200 18 C 0.094 3.906 19 C -0.520 4.520 20 H 0.099 0.901 21 C -0.183 4.183 22 N -0.480 5.480 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.169 1.169 26 H -0.196 1.196 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.248 0.752 45 H 0.133 0.867 46 H 0.118 0.882 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.112 0.888 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.980 3.138 17.964 19.905 hybrid contribution -0.063 0.693 -0.781 1.046 sum -8.042 3.831 17.183 19.355 Atomic orbital electron populations 1.21844 0.94450 1.01758 1.01969 1.21262 0.96355 0.96699 0.98479 1.22217 1.00178 0.95693 1.02625 1.21715 0.92718 1.00861 0.97837 1.20738 0.96632 0.96424 0.92768 1.21883 1.01305 0.98540 0.97870 1.22307 1.00663 0.95523 1.02453 1.21477 0.80403 0.99405 0.97988 1.45907 1.08043 1.65835 1.17733 1.21109 0.91335 0.75802 0.81490 1.90686 1.65412 1.50681 1.38763 1.20320 0.90950 1.03386 0.96235 1.19628 1.08807 0.93252 0.95597 1.20782 0.99653 0.94181 0.97204 1.20796 1.11712 0.98719 0.93546 1.20992 1.01170 0.94039 0.97963 1.21356 1.05269 0.94417 0.98914 1.17757 0.87679 0.93913 0.91263 1.19615 1.37176 0.92955 1.02235 0.90142 1.26639 0.93175 1.04686 0.93821 1.69889 1.32517 1.38976 1.06587 0.85351 0.79215 0.77150 0.78968 1.20081 1.16932 1.19588 0.91357 0.93352 0.92785 0.93363 0.93954 0.93169 0.90440 0.91727 0.89419 0.92205 0.90537 0.92934 0.92794 0.90462 0.92217 0.93880 0.93760 0.75183 0.86715 0.88241 0.86325 0.86423 0.87613 0.88822 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.99 71.98 0.65 -1.82 16 2 C -0.11 -2.20 2.49 -10.79 -0.03 -2.23 16 3 C -0.15 -2.92 7.95 71.98 0.57 -2.35 16 4 C -0.09 -1.54 3.88 30.60 0.12 -1.42 16 5 C -0.07 -1.19 0.56 -52.18 -0.03 -1.22 16 6 C -0.14 -2.04 8.20 71.98 0.59 -1.45 16 7 C -0.15 -2.57 6.73 71.98 0.48 -2.09 16 8 C 0.13 3.67 3.82 86.38 0.33 4.00 16 9 N -0.72 -21.19 5.00 -463.06 -2.31 -23.50 16 10 C 0.51 20.89 7.82 87.66 0.69 21.57 16 11 O -0.58 -30.60 16.03 -3.01 -0.05 -30.65 16 12 C -0.07 -2.64 5.36 29.10 0.16 -2.49 16 13 C -0.17 -8.28 4.43 -19.40 -0.09 -8.36 16 14 C -0.10 -4.52 9.66 22.22 0.21 -4.30 16 15 C -0.23 -10.46 10.05 22.46 0.23 -10.24 16 16 C -0.12 -6.16 10.02 22.22 0.22 -5.94 16 17 C -0.18 -10.15 8.62 22.73 0.20 -9.95 16 18 C 0.10 5.32 5.49 -21.29 -0.12 5.21 16 19 C -0.49 -26.80 8.27 23.46 0.19 -26.61 16 20 H 0.08 4.09 6.61 -2.91 -0.02 4.07 16 21 C 0.03 1.50 5.36 85.26 0.46 1.95 16 22 N -0.85 -49.37 10.97 21.83 0.24 -49.13 16 23 Si 0.97 41.28 29.56 68.60 2.03 43.31 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.27 5.87 -2.39 -0.01 1.26 16 31 H 0.04 0.99 6.23 -2.39 -0.01 0.97 16 32 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 33 H 0.08 1.19 6.00 -2.39 -0.01 1.18 16 34 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 35 H 0.09 1.11 7.71 -2.39 -0.02 1.09 16 36 H 0.06 0.85 6.83 -2.39 -0.02 0.84 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 1.14 5.08 -2.39 -0.01 1.12 16 40 H 0.08 1.00 6.85 -2.39 -0.02 0.99 16 41 H 0.06 0.91 7.38 -2.38 -0.02 0.89 16 42 H 0.04 1.45 6.14 -2.39 -0.01 1.44 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.41 8.98 6.48 -92.71 -0.60 8.38 16 45 H 0.11 3.35 8.05 -2.38 -0.02 3.33 16 46 H 0.10 3.62 6.62 -2.39 -0.02 3.61 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 48 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 49 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 50 H 0.09 5.58 6.54 -2.91 -0.02 5.56 16 51 H 0.28 14.87 8.30 -92.71 -0.77 14.10 16 Total: -1.00 -72.96 390.16 5.06 -67.91 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: 0.31 Total: 39.79 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.84 Total: -47.72 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.07 Total: -72.63 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -72.96 5.06 -67.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776978103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.717 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds