Wall clock time and date at job start Tue Mar 31 2020 12:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 C 1.52992 * 109.47120 * 299.99904 * 3 2 1 5 5 C 1.53002 * 109.47383 * 299.99985 * 4 3 2 6 6 C 1.53005 * 109.47201 * 180.02562 * 3 2 1 7 7 C 1.52993 * 109.47094 * 179.97438 * 6 3 2 8 8 C 1.53002 * 109.46981 * 60.00136 * 3 2 1 9 9 N 1.46501 * 109.47374 * 59.99993 * 8 3 2 10 10 C 1.34771 * 119.99762 * 179.97438 * 9 8 3 11 11 O 1.21275 * 120.00380 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99694 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47125 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12931 * 264.99856 * 13 12 10 15 15 C 1.38608 * 120.24877 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50357 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24831 * 0.02629 * 16 15 14 18 18 C 1.40696 * 120.12760 * 84.73009 * 13 12 10 19 19 C 1.41398 * 120.24431 * 359.97438 * 18 13 12 20 20 H 1.08003 * 120.00339 * 333.91158 * 19 18 13 21 21 C 1.39952 * 119.99773 * 153.90103 * 19 18 13 22 22 N 1.30816 * 119.99844 * 343.71763 * 21 19 18 23 23 Si 1.86796 * 119.99737 * 163.71668 * 21 19 18 24 24 H 1.48500 * 109.47359 * 90.00328 * 23 21 19 25 25 H 1.48502 * 109.46856 * 210.00291 * 23 21 19 26 26 H 1.48498 * 109.47103 * 330.00065 * 23 21 19 27 27 H 1.09010 * 109.47061 * 300.00044 * 1 2 3 28 28 H 1.09001 * 109.47121 * 59.99657 * 1 2 3 29 29 H 1.08993 * 109.47134 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47232 * 239.99608 * 2 1 3 31 31 H 1.09001 * 109.47121 * 120.00343 * 2 1 3 32 32 H 1.08999 * 109.47264 * 59.99940 * 4 3 2 33 33 H 1.09003 * 109.47516 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47024 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46883 * 300.00188 * 5 4 3 36 36 H 1.09003 * 109.46778 * 59.99569 * 5 4 3 37 37 H 1.09006 * 109.46680 * 299.99730 * 6 3 2 38 38 H 1.08996 * 109.47058 * 59.99881 * 6 3 2 39 39 H 1.09001 * 109.47336 * 300.00186 * 7 6 3 40 40 H 1.09010 * 109.47068 * 59.99936 * 7 6 3 41 41 H 1.09004 * 109.47418 * 179.97438 * 7 6 3 42 42 H 1.08999 * 109.46883 * 299.99742 * 8 3 2 43 43 H 1.09002 * 109.47196 * 180.02562 * 8 3 2 44 44 H 0.97002 * 119.99467 * 0.02562 * 9 8 3 45 45 H 1.09002 * 109.46965 * 300.00231 * 12 10 9 46 46 H 1.08999 * 109.47412 * 60.00125 * 12 10 9 47 47 H 1.08007 * 119.87242 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.74457 * 180.02562 * 15 14 13 49 49 H 1.07998 * 119.87498 * 179.97438 * 16 15 14 50 50 H 1.08001 * 120.12872 * 179.97438 * 17 16 15 51 51 H 0.97004 * 120.00045 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0401 1.4425 -2.4985 6 6 3.5701 1.4424 -0.0006 7 6 4.0801 2.8848 -0.0013 8 6 1.5301 2.1637 1.2493 9 7 2.0184 1.4731 2.4455 10 6 1.6932 1.9339 3.6695 11 8 0.9960 2.9200 3.7808 12 6 2.1960 1.2238 4.9000 13 6 1.6936 1.9342 6.1304 14 6 2.4803 2.8757 6.7543 15 6 2.0204 3.5309 7.8858 16 6 0.7656 3.2466 8.4027 17 6 -0.0375 2.3082 7.7961 18 6 0.4163 1.6416 6.6427 19 6 -0.4032 0.6807 6.0067 20 1 -0.2796 0.4780 4.9531 21 6 -1.3743 -0.0079 6.7426 22 7 -1.3238 -0.0115 8.0498 23 14 -2.7425 -0.9217 5.8581 24 1 -2.3127 -2.3176 5.5900 25 1 -3.9600 -0.9332 6.7083 26 1 -3.0425 -0.2406 4.5731 27 1 -0.3634 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.4401 2.1638 -1.2492 33 1 1.8939 3.1913 -1.2495 34 1 1.6764 1.9561 -3.3884 35 1 3.1301 1.4424 -2.4984 36 1 1.6767 0.4148 -2.4984 37 1 3.9337 0.9285 0.8892 38 1 3.9330 0.9287 -0.8908 39 1 3.7164 3.3985 -0.8913 40 1 3.7171 3.3990 0.8888 41 1 5.1702 2.8849 -0.0013 42 1 0.4401 2.1638 1.2492 43 1 1.8931 3.1915 1.2491 44 1 2.5763 0.6846 2.3564 45 1 1.8327 0.1961 4.9003 46 1 3.2860 1.2238 4.8997 47 1 3.4592 3.1054 6.3600 48 1 2.6443 4.2686 8.3686 49 1 0.4176 3.7629 9.2851 50 1 -1.0144 2.0880 8.2006 51 1 -1.9971 -0.4884 8.5599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776980577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:34 Heat of formation + Delta-G solvation = -49.896145 kcal Electronic energy + Delta-G solvation = -27635.434159 eV Core-core repulsion = 24112.183874 eV Total energy + Delta-G solvation = -3523.250285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.98599 -38.49579 -37.11497 -33.63283 -33.56092 -32.37871 -31.64992 -30.81536 -29.39984 -28.13702 -26.52352 -25.42183 -24.86005 -23.19404 -22.06065 -20.87633 -20.37031 -19.31249 -18.15549 -17.12233 -16.53983 -16.02194 -15.57230 -15.38275 -15.18194 -14.93975 -14.38735 -14.31393 -13.53246 -13.25055 -13.23366 -13.20434 -12.88977 -12.86709 -12.72761 -12.53975 -12.09219 -12.00990 -11.74669 -11.63822 -11.54733 -11.50910 -11.44215 -11.10011 -10.95636 -10.92300 -10.69798 -10.66414 -10.44853 -10.35216 -10.33564 -10.22884 -9.42800 -9.32174 -9.11188 -9.05007 -8.54132 -7.25156 -7.22926 -6.68415 -4.28483 2.83382 3.03380 3.09428 3.14947 3.31443 3.46010 3.78883 3.97755 4.49626 4.60856 4.62268 4.71764 5.00044 5.02808 5.21540 5.25193 5.33401 5.39199 5.45469 5.53897 5.60407 5.61871 5.71643 5.76545 5.81443 5.86799 5.90927 5.95311 5.97827 6.01000 6.06827 6.10385 6.19339 6.23326 6.24093 6.27389 6.34336 6.47962 6.49661 6.56688 6.85961 6.92703 7.14125 7.35510 7.48265 7.70307 7.96389 8.05321 8.14661 8.18893 8.37545 8.70772 8.97278 8.98863 9.07675 10.25765 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.004078 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.023156 B = 6864.019239 C = 8548.330168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.068 4.068 4 C -0.115 4.115 5 C -0.153 4.153 6 C -0.114 4.114 7 C -0.157 4.157 8 C 0.128 3.872 9 N -0.741 5.741 10 C 0.514 3.486 11 O -0.523 6.523 12 C -0.071 4.071 13 C -0.178 4.178 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.393 0.607 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.117 0.883 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -1.752 -16.964 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C -0.069 4.069 4 C -0.153 4.153 5 C -0.210 4.210 6 C -0.151 4.151 7 C -0.214 4.214 8 C 0.004 3.996 9 N -0.396 5.396 10 C 0.301 3.699 11 O -0.397 6.397 12 C -0.111 4.111 13 C -0.180 4.180 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.228 0.772 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.134 0.866 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.250 -1.118 -16.659 17.828 hybrid contribution -0.416 -0.819 -0.324 0.975 sum 5.833 -1.937 -16.983 18.061 Atomic orbital electron populations 1.21894 0.95669 1.01652 1.02354 1.21596 0.96368 0.95331 1.01844 1.20853 0.95460 0.95811 0.94733 1.21577 1.01003 0.99346 0.93390 1.21859 1.01301 1.00729 0.97154 1.21593 0.94147 0.97548 1.01839 1.21884 1.00450 0.96788 1.02284 1.21337 0.99149 0.95829 0.83250 1.46148 1.55360 1.32544 1.05566 1.21175 0.79878 0.84731 0.84127 1.90675 1.36353 1.26099 1.86531 1.20265 0.99490 1.00483 0.90886 1.19062 0.95959 1.04097 0.98907 1.20295 0.97410 0.96423 0.95913 1.20297 0.98220 1.06287 1.01095 1.20668 0.94943 0.98434 0.98593 1.21295 1.00037 0.97568 0.99000 1.17329 0.89368 0.89883 0.90747 1.19460 1.14389 1.18201 0.96475 0.90812 1.25864 0.97756 0.95748 0.94618 1.69821 1.31790 1.34029 1.06574 0.86434 0.80562 0.79804 0.80677 1.19575 1.20117 1.18566 0.91891 0.92594 0.92967 0.91712 0.91900 0.91458 0.91551 0.93082 0.92464 0.92408 0.91975 0.91674 0.92530 0.92106 0.93075 0.91695 0.91887 0.77238 0.88740 0.90813 0.89837 0.89733 0.89641 0.86555 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.21 37.16 0.34 -1.33 16 2 C -0.11 -1.07 4.46 -26.73 -0.12 -1.19 16 3 C -0.07 -0.65 0.11 -154.51 -0.02 -0.66 16 4 C -0.12 -1.00 4.28 -26.73 -0.11 -1.11 16 5 C -0.15 -1.12 9.21 37.16 0.34 -0.77 16 6 C -0.11 -0.98 4.46 -26.73 -0.12 -1.10 16 7 C -0.16 -1.42 9.21 37.15 0.34 -1.08 16 8 C 0.13 1.69 3.86 -4.04 -0.02 1.67 16 9 N -0.74 -10.73 4.96 -60.29 -0.30 -11.03 16 10 C 0.51 10.07 7.44 -10.99 -0.08 9.99 16 11 O -0.52 -12.72 16.03 5.56 0.09 -12.63 16 12 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 13 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 14 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 15 C -0.24 -5.70 10.05 -39.29 -0.39 -6.10 16 16 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16 18 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 19 C -0.46 -12.15 8.14 -37.74 -0.31 -12.45 16 20 H 0.07 1.92 6.67 -52.48 -0.35 1.57 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.82 10.95 55.55 0.61 -20.22 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 27 H 0.06 0.81 6.43 -51.92 -0.33 0.48 16 28 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 32 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 33 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 36 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 37 H 0.06 0.55 6.86 -51.93 -0.36 0.19 16 38 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 39 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 40 H 0.06 0.66 6.43 -51.92 -0.33 0.33 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.97 6.43 -51.93 -0.33 0.64 16 43 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 44 H 0.39 4.64 6.17 -40.82 -0.25 4.38 16 45 H 0.09 1.85 7.08 -51.93 -0.37 1.48 16 46 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 47 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 48 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 50 H 0.12 3.25 6.20 -52.49 -0.33 2.92 16 51 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -30.59 383.93 -9.50 -40.09 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.10 Total: 9.76 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -2.56 Total: -25.84 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.31 Total: -31.25 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.59 -9.50 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.805 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds