Wall clock time and date at job start Tue Mar 31 2020 12:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47686 * 2 1 4 4 C 1.52994 * 109.47316 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46688 * 180.02562 * 5 4 3 7 7 C 1.53007 * 109.46855 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46855 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.09002 * 109.47293 * 300.00027 * 1 2 3 28 28 H 1.09005 * 109.47069 * 60.00214 * 1 2 3 29 29 H 1.09001 * 109.47709 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47151 * 239.99473 * 2 1 3 31 31 H 1.09001 * 109.47286 * 120.00697 * 2 1 3 32 32 H 1.09002 * 109.46776 * 59.99657 * 3 2 1 33 33 H 1.09005 * 109.46618 * 300.00569 * 3 2 1 34 34 H 1.09007 * 109.47080 * 60.00344 * 4 3 2 35 35 H 1.08997 * 109.47179 * 299.99939 * 4 3 2 36 36 H 1.09000 * 109.47103 * 60.00714 * 5 4 3 37 37 H 1.08997 * 109.47392 * 300.00005 * 5 4 3 38 38 H 1.08994 * 109.47287 * 60.00173 * 6 5 4 39 39 H 1.09005 * 109.47160 * 299.99775 * 6 5 4 40 40 H 1.08994 * 109.47317 * 59.99842 * 7 6 5 41 41 H 1.08997 * 109.47023 * 299.99696 * 7 6 5 42 42 H 1.08994 * 109.47287 * 59.99824 * 8 7 6 43 43 H 1.08997 * 109.47057 * 299.99675 * 8 7 6 44 44 H 0.97002 * 120.00149 * 0.02562 * 9 8 7 45 45 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 46 46 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 47 47 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 49 49 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 50 50 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 51 51 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1201 4.3273 0.0000 8 6 7.6501 4.3272 0.0006 9 7 8.1385 5.7084 0.0000 10 6 9.4636 5.9547 0.0010 11 8 10.2516 5.0328 0.0018 12 6 9.9659 7.3754 0.0009 13 6 11.4729 7.3754 0.0014 14 6 12.1635 7.4730 1.1881 15 6 13.5495 7.4799 1.1909 16 6 14.2562 7.3819 0.0020 17 6 13.5868 7.2769 -1.1957 18 6 12.1796 7.2691 -1.2106 19 6 11.4810 7.1612 -2.4352 20 1 10.4824 7.5627 -2.5244 21 6 12.0835 6.5340 -3.5316 22 7 13.1351 5.7762 -3.3550 23 14 11.3861 6.7790 -5.2471 24 1 10.4565 5.6661 -5.5672 25 1 10.6522 8.0687 -5.3036 26 1 12.4952 6.7969 -6.2344 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8892 35 1 3.9329 0.9286 0.8908 36 1 3.7164 3.3992 0.8896 37 1 3.7171 3.3982 -0.8904 38 1 5.9734 2.3706 -0.8897 39 1 5.9734 2.3713 0.8903 40 1 5.7568 4.8412 0.8899 41 1 5.7569 4.8411 -0.8900 42 1 8.0138 3.8132 -0.8890 43 1 8.0130 3.8135 0.8909 44 1 7.5082 6.4458 -0.0003 45 1 9.6020 7.8895 0.8905 46 1 9.6033 7.8890 -0.8895 47 1 11.6233 7.5492 2.1201 48 1 14.0832 7.5618 2.1263 49 1 15.3361 7.3879 0.0159 50 1 14.1392 7.2002 -2.1205 51 1 13.5530 5.3417 -4.1150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776988134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:36 Heat of formation + Delta-G solvation = -86.891873 kcal Electronic energy + Delta-G solvation = -25336.506923 eV Core-core repulsion = 21811.652383 eV Total energy + Delta-G solvation = -3524.854540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.71351 -39.15005 -37.87084 -36.43961 -35.46784 -34.63772 -33.44700 -31.87490 -31.32326 -29.14039 -27.88269 -26.80463 -24.95214 -22.83095 -22.66285 -22.22604 -21.76943 -21.63623 -20.76302 -19.06579 -17.68971 -17.35361 -17.13327 -16.87643 -16.51617 -16.13829 -15.92466 -15.35460 -15.21977 -14.86246 -14.61005 -14.58077 -14.39122 -14.36616 -13.61934 -13.55428 -13.43730 -13.28474 -13.02037 -12.90834 -12.77170 -12.64850 -12.50910 -12.46895 -12.43067 -12.10369 -12.04484 -11.81757 -11.72790 -11.43834 -11.31334 -11.30058 -11.23992 -11.15855 -11.00726 -10.66991 -9.96137 -9.21234 -9.16058 -8.56482 -6.25608 1.00970 1.14216 1.35297 1.48339 1.54207 1.92265 2.20708 2.44388 2.82112 3.70956 3.77310 3.97172 4.01942 4.10322 4.18042 4.20804 4.29815 4.33748 4.41400 4.49047 4.57511 4.59413 4.63965 4.65874 4.74241 4.80329 4.80931 4.88735 4.89745 4.93742 5.01447 5.05396 5.13538 5.13836 5.15856 5.25053 5.26114 5.33537 5.35789 5.37670 5.45845 5.53662 5.56284 5.56608 5.63401 5.80299 6.05452 6.15509 6.22909 6.44874 6.73069 6.79806 7.00430 7.13531 7.54699 8.41258 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002169 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.258907 B =12905.482415 C =14245.775454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.119 3.881 9 N -0.726 5.726 10 C 0.513 3.487 11 O -0.578 6.578 12 C -0.068 4.068 13 C -0.188 4.188 14 C -0.092 4.092 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.484 4.484 20 H 0.083 0.917 21 C 0.027 3.973 22 N -0.833 5.833 23 Si 0.976 3.024 24 H -0.270 1.270 25 H -0.248 1.248 26 H -0.270 1.270 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.415 0.585 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.154 -4.270 4.982 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.005 4.005 9 N -0.380 5.380 10 C 0.301 3.699 11 O -0.456 6.456 12 C -0.107 4.107 13 C -0.190 4.190 14 C -0.110 4.110 15 C -0.263 4.263 16 C -0.135 4.135 17 C -0.215 4.215 18 C 0.094 3.906 19 C -0.514 4.514 20 H 0.101 0.899 21 C -0.186 4.186 22 N -0.459 5.459 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.171 1.171 26 H -0.194 1.194 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.252 0.748 45 H 0.134 0.866 46 H 0.118 0.882 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.122 0.878 50 H 0.113 0.887 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.437 -5.091 4.861 23.516 hybrid contribution 0.293 -0.109 -0.905 0.957 sum -22.144 -5.199 3.957 23.088 Atomic orbital electron populations 1.21783 0.95530 1.01827 1.01924 1.21562 0.96217 0.96958 1.01849 1.21603 0.95019 0.96777 1.02127 1.21612 0.95652 0.96791 1.01837 1.21539 0.93971 0.96949 1.02541 1.21509 0.96337 0.95545 1.02119 1.21713 0.91182 0.98544 1.03832 1.21317 0.95790 0.83002 1.00361 1.45908 1.06405 1.09287 1.76419 1.21212 0.82154 0.92221 0.74357 1.90687 1.56941 1.48042 1.49935 1.20304 0.93129 0.92578 1.04723 1.19518 0.94095 1.12439 0.92902 1.20740 0.94290 0.99484 0.96487 1.20711 0.94361 1.14341 0.96925 1.20946 0.98431 1.00683 0.93476 1.21291 0.95304 1.08222 0.96680 1.17757 0.92133 0.87816 0.92937 1.19726 1.02195 1.33940 0.95563 0.89902 1.26803 0.94545 0.92143 1.05104 1.69943 1.20006 1.21979 1.34019 0.85297 0.78803 0.79980 0.76260 1.19510 1.17100 1.19417 0.92556 0.92709 0.92541 0.92370 0.92164 0.91790 0.92047 0.92534 0.92163 0.91237 0.91701 0.92560 0.91909 0.89650 0.90441 0.94457 0.93201 0.74838 0.86650 0.88181 0.86503 0.86738 0.87800 0.88669 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.45 5.93 30.59 0.18 -1.27 16 3 C -0.12 -1.36 5.21 30.59 0.16 -1.20 16 4 C -0.12 -1.57 5.21 30.59 0.16 -1.41 16 5 C -0.11 -1.46 5.21 30.60 0.16 -1.30 16 6 C -0.12 -1.90 5.21 30.60 0.16 -1.74 16 7 C -0.12 -1.98 5.33 30.60 0.16 -1.82 16 8 C 0.12 3.24 5.67 86.38 0.49 3.73 16 9 N -0.73 -21.05 5.56 -463.07 -2.57 -23.62 16 10 C 0.51 20.82 7.82 87.65 0.69 21.51 16 11 O -0.58 -30.73 16.03 -3.04 -0.05 -30.78 16 12 C -0.07 -2.59 5.35 29.10 0.16 -2.43 16 13 C -0.19 -9.16 4.43 -19.40 -0.09 -9.24 16 14 C -0.09 -4.21 9.66 22.22 0.21 -3.99 16 15 C -0.24 -11.35 10.05 22.46 0.23 -11.13 16 16 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 17 C -0.20 -11.04 8.68 22.73 0.20 -10.84 16 18 C 0.10 5.34 5.56 -21.29 -0.12 5.22 16 19 C -0.48 -26.43 8.46 23.46 0.20 -26.23 16 20 H 0.08 4.18 6.36 -2.91 -0.02 4.16 16 21 C 0.03 1.46 5.16 85.26 0.44 1.90 16 22 N -0.83 -47.26 10.98 21.83 0.24 -47.02 16 23 Si 0.98 39.88 29.59 68.60 2.03 41.91 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.41 8.46 8.47 -92.71 -0.79 7.68 16 45 H 0.12 3.37 8.06 -2.39 -0.02 3.35 16 46 H 0.10 3.62 6.48 -2.39 -0.02 3.61 16 47 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 48 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 49 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 50 H 0.10 5.63 6.23 -2.91 -0.02 5.62 16 51 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 Total: -1.00 -72.83 412.87 4.06 -68.76 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.09 Total: 37.49 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.32 Total: -46.75 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -2.33 Total: -70.64 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -72.83 4.06 -68.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776988134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.129 kcal (2) G-P(sol) polarization free energy of solvation -72.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds