Wall clock time and date at job start Tue Mar 31 2020 12:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 C 1.53003 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47331 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47331 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47112 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46728 * 305.00135 * 7 6 5 9 9 C 1.53002 * 109.46973 * 185.00189 * 7 6 5 10 10 N 1.46501 * 109.47254 * 64.99733 * 7 6 5 11 11 C 1.34777 * 120.00110 * 204.99893 * 10 7 6 12 12 O 1.21277 * 119.99798 * 0.02562 * 11 10 7 13 13 C 1.50701 * 119.99784 * 180.02562 * 11 10 7 14 14 C 1.50705 * 109.46577 * 180.02562 * 13 11 10 15 15 C 1.37634 * 120.12646 * 264.99799 * 14 13 11 16 16 C 1.38614 * 120.25015 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.49762 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.24733 * 0.02562 * 17 16 15 19 19 C 1.40690 * 120.12477 * 84.72941 * 14 13 11 20 20 C 1.41395 * 120.25017 * 359.97438 * 19 14 13 21 21 H 1.08002 * 119.99859 * 333.90275 * 20 19 14 22 22 C 1.39943 * 120.00213 * 153.89902 * 20 19 14 23 23 N 1.30819 * 120.00112 * 343.71190 * 22 20 19 24 24 Si 1.86799 * 119.99840 * 163.70787 * 22 20 19 25 25 H 1.48498 * 109.47365 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47364 * 120.00400 * 24 22 20 27 27 H 1.48497 * 109.47374 * 240.00128 * 24 22 20 28 28 H 1.09003 * 109.46828 * 60.00223 * 1 2 3 29 29 H 1.08998 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47290 * 300.00610 * 1 2 3 31 31 H 1.09003 * 109.47496 * 239.99599 * 2 1 3 32 32 H 1.09000 * 109.47059 * 120.00502 * 2 1 3 33 33 H 1.08995 * 109.47343 * 60.00037 * 3 2 1 34 34 H 1.08994 * 109.47070 * 299.99444 * 3 2 1 35 35 H 1.09003 * 109.47009 * 60.00147 * 4 3 2 36 36 H 1.08999 * 109.47538 * 300.00054 * 4 3 2 37 37 H 1.09000 * 109.47621 * 300.00690 * 5 4 3 38 38 H 1.09003 * 109.46707 * 60.00264 * 5 4 3 39 39 H 1.08994 * 109.46893 * 300.00085 * 6 5 4 40 40 H 1.08995 * 109.46803 * 60.00239 * 6 5 4 41 41 H 1.08992 * 109.47029 * 60.00055 * 9 7 6 42 42 H 1.08998 * 109.46450 * 180.02562 * 9 7 6 43 43 H 1.09003 * 109.46698 * 299.99872 * 9 7 6 44 44 H 0.97004 * 119.99810 * 25.00098 * 10 7 6 45 45 H 1.08996 * 109.46939 * 300.00156 * 13 11 10 46 46 H 1.08994 * 109.47153 * 60.00530 * 13 11 10 47 47 H 1.08003 * 119.87721 * 0.02562 * 15 14 13 48 48 H 1.08000 * 119.75435 * 180.02562 * 16 15 14 49 49 H 1.08002 * 119.87167 * 180.02562 * 17 16 15 50 50 H 1.08002 * 120.12633 * 179.97438 * 18 17 16 51 51 H 0.97000 * 119.99889 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0013 7 6 6.1202 4.3273 0.0013 8 1 5.6862 4.8660 -0.8410 9 6 7.6451 4.3290 -0.1232 10 7 5.7315 4.9827 1.2525 11 6 5.6047 6.3237 1.2998 12 8 5.8119 6.9877 0.3063 13 6 5.2055 6.9978 2.5871 14 6 5.1348 8.4879 2.3728 15 6 6.2173 9.2817 2.6768 16 6 6.1552 10.6524 2.4801 17 6 5.0046 11.2397 1.9764 18 6 3.9100 10.4657 1.6665 19 6 3.9640 9.0721 1.8558 20 6 2.8479 8.2659 1.5339 21 1 2.9889 7.2270 1.2747 22 6 1.5604 8.8141 1.5514 23 7 1.3420 9.9519 2.1591 24 14 0.1536 7.9213 0.7068 25 1 0.6592 6.6648 0.0979 26 1 -0.8982 7.5991 1.7044 27 1 -0.4188 8.7900 -0.3529 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9284 -0.8892 36 1 3.9330 0.9287 0.8908 37 1 3.7171 3.3983 -0.8904 38 1 3.7164 3.3991 0.8896 39 1 5.9726 2.3716 0.8919 40 1 5.9741 2.3703 -0.8880 41 1 7.9342 3.8414 -1.0541 42 1 8.0084 5.3567 -0.1227 43 1 8.0790 3.7902 0.7192 44 1 5.5655 4.4515 2.0471 45 1 4.2293 6.6297 2.9024 46 1 5.9438 6.7759 3.3576 47 1 7.1188 8.8348 3.0693 48 1 7.0095 11.2677 2.7211 49 1 4.9674 12.3086 1.8268 50 1 3.0146 10.9252 1.2747 51 1 0.4497 10.3320 2.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777289784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:43 Heat of formation + Delta-G solvation = -68.262965 kcal Electronic energy + Delta-G solvation = -26635.233518 eV Core-core repulsion = 23111.186788 eV Total energy + Delta-G solvation = -3524.046730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.38095 -37.57969 -36.80380 -35.45535 -33.57125 -32.80731 -31.78642 -30.49076 -29.38844 -28.26907 -26.66246 -24.97131 -24.49149 -21.80424 -21.09054 -20.99783 -20.84478 -20.18198 -19.24663 -17.12281 -16.44354 -16.14079 -15.78368 -15.29516 -14.68998 -14.55239 -14.34807 -14.19265 -13.79488 -13.61643 -13.39776 -13.20654 -13.03608 -12.73704 -12.60788 -12.50944 -12.17296 -11.78672 -11.66916 -11.63171 -11.53811 -11.47833 -11.14327 -11.07900 -11.01142 -10.93863 -10.86791 -10.75002 -10.62056 -10.56689 -10.34649 -10.33290 -9.43248 -9.31796 -9.12629 -9.03900 -8.60706 -7.25694 -7.23583 -6.68957 -4.29060 2.81826 3.02750 3.09812 3.15047 3.30446 3.44572 3.77056 3.97229 4.45032 4.71029 4.73173 4.85711 4.90828 4.98319 5.08363 5.25438 5.34675 5.45423 5.49804 5.56606 5.58814 5.64966 5.67788 5.73523 5.80347 5.85864 5.86853 5.89228 5.97480 5.97551 6.05363 6.12998 6.16257 6.23031 6.31089 6.32592 6.34469 6.38518 6.49458 6.56176 6.85672 6.96440 7.13824 7.34978 7.47694 7.69880 7.96040 8.05366 8.14479 8.18404 8.36989 8.70439 8.96859 8.98487 9.07100 10.25268 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.004038 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.891574 B = 6933.256174 C = 9399.838678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.123 4.123 7 C 0.141 3.859 8 H 0.085 0.915 9 C -0.161 4.161 10 N -0.739 5.739 11 C 0.515 3.485 12 O -0.522 6.522 13 C -0.072 4.072 14 C -0.179 4.179 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.129 3.871 20 C -0.455 4.455 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.900 3.100 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.393 0.607 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.117 0.883 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -17.531 -1.714 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.162 4.162 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.161 4.161 7 C 0.036 3.964 8 H 0.103 0.897 9 C -0.220 4.220 10 N -0.394 5.394 11 C 0.303 3.697 12 O -0.395 6.395 13 C -0.112 4.112 14 C -0.181 4.181 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.126 3.874 20 C -0.485 4.485 21 H 0.093 0.907 22 C -0.140 4.140 23 N -0.422 5.422 24 Si 0.725 3.275 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.198 1.198 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.227 0.773 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.134 0.866 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.372 -16.863 -2.397 17.197 hybrid contribution -0.771 -0.552 0.015 0.949 sum 1.600 -17.415 -2.382 17.650 Atomic orbital electron populations 1.21790 0.96039 1.01349 1.02004 1.21529 0.95783 0.97128 1.01686 1.21653 0.95585 0.96471 1.02447 1.21591 0.95297 0.96924 1.01630 1.21628 0.94906 0.96463 1.03050 1.21874 0.96023 0.95730 1.02456 1.20857 0.94323 0.92609 0.88651 0.89715 1.22167 0.96047 1.02561 1.01208 1.46218 1.72877 1.07498 1.12769 1.21183 0.75838 0.81130 0.91568 1.90669 1.48247 1.63896 1.36732 1.20270 1.02253 0.95052 0.93577 1.19068 0.96977 0.91580 1.10442 1.20294 0.95896 0.93723 1.00115 1.20305 0.98176 0.94375 1.13056 1.20671 0.94238 0.97381 1.00347 1.21297 0.97602 0.94299 1.04689 1.17339 0.90918 0.92060 0.87062 1.19494 0.90319 0.97748 1.40895 0.90744 1.25863 1.00335 0.94700 0.93101 1.69829 1.23304 1.17294 1.31765 0.86390 0.80546 0.80695 0.79893 1.18455 1.20075 1.19759 0.92762 0.92995 0.92659 0.92290 0.92215 0.91821 0.91989 0.92315 0.92211 0.91822 0.91399 0.91696 0.90950 0.92274 0.91995 0.92878 0.77332 0.88716 0.90785 0.89833 0.89720 0.89633 0.86551 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.02 5.93 -26.74 -0.16 -1.18 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 5 C -0.12 -1.31 5.10 -26.73 -0.14 -1.45 16 6 C -0.12 -1.20 4.75 -26.73 -0.13 -1.33 16 7 C 0.14 1.83 2.57 -67.93 -0.17 1.66 16 8 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 9 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 10 N -0.74 -10.64 4.53 -53.80 -0.24 -10.88 16 11 C 0.52 10.03 7.40 -10.98 -0.08 9.94 16 12 O -0.52 -12.54 15.70 5.56 0.09 -12.46 16 13 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 16 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 17 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 18 C -0.16 -4.34 8.69 -38.87 -0.34 -4.67 16 19 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 20 C -0.45 -12.08 8.14 -37.74 -0.31 -12.39 16 21 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 23 N -0.80 -20.77 10.96 55.55 0.61 -20.16 16 24 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 25 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.39 4.51 8.60 -40.82 -0.35 4.16 16 45 H 0.09 1.84 7.08 -51.93 -0.37 1.47 16 46 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 47 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 48 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 50 H 0.12 3.25 6.21 -52.49 -0.33 2.92 16 51 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 LS Contribution 411.11 15.07 6.20 6.20 Total: -1.00 -30.51 411.11 -11.09 -41.60 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -9.35 Total: 9.18 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.35 Total: -27.52 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.36 Total: -31.04 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.51 -11.09 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777289784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.664 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds