Wall clock time and date at job start Tue Mar 31 2020 12:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47108 * 2 1 4 4 C 1.53000 * 109.47108 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47218 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47218 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47177 * 55.00246 * 7 6 5 9 9 C 1.53001 * 109.47188 * 174.99739 * 7 6 5 10 10 N 1.46496 * 109.46953 * 294.99528 * 7 6 5 11 11 C 1.34776 * 119.99822 * 155.00112 * 10 7 6 12 12 O 1.21281 * 120.00092 * 0.02562 * 11 10 7 13 13 C 1.50694 * 120.00222 * 180.02562 * 11 10 7 14 14 C 1.50705 * 109.47406 * 179.97438 * 13 11 10 15 15 C 1.37627 * 120.12919 * 264.97763 * 14 13 11 16 16 C 1.38620 * 120.25010 * 179.97438 * 15 14 13 17 17 C 1.38658 * 120.49737 * 0.05065 * 16 15 14 18 18 C 1.37590 * 120.24831 * 359.66497 * 17 16 15 19 19 C 1.40694 * 120.12421 * 85.00097 * 14 13 11 20 20 C 1.41401 * 120.24909 * 359.97438 * 19 14 13 21 21 H 1.08003 * 119.99476 * 334.63066 * 20 19 14 22 22 C 1.39937 * 120.00298 * 154.63105 * 20 19 14 23 23 N 1.30822 * 120.00325 * 334.67536 * 22 20 19 24 24 Si 1.86803 * 120.00022 * 154.67422 * 22 20 19 25 25 H 1.48500 * 109.47132 * 179.97438 * 24 22 20 26 26 H 1.48492 * 109.47144 * 300.00104 * 24 22 20 27 27 H 1.48509 * 109.46903 * 60.00147 * 24 22 20 28 28 H 1.09002 * 109.47330 * 299.99872 * 1 2 3 29 29 H 1.09001 * 109.47454 * 59.99805 * 1 2 3 30 30 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46843 * 240.00054 * 2 1 3 32 32 H 1.08999 * 109.46941 * 120.00220 * 2 1 3 33 33 H 1.08998 * 109.47224 * 60.00288 * 3 2 1 34 34 H 1.09001 * 109.47122 * 300.00398 * 3 2 1 35 35 H 1.08998 * 109.46843 * 60.00054 * 4 3 2 36 36 H 1.08999 * 109.46941 * 300.00220 * 4 3 2 37 37 H 1.08998 * 109.47224 * 60.00288 * 5 4 3 38 38 H 1.08999 * 109.47399 * 299.99939 * 5 4 3 39 39 H 1.08998 * 109.47096 * 59.99832 * 6 5 4 40 40 H 1.09001 * 109.47091 * 300.00040 * 6 5 4 41 41 H 1.09005 * 109.47206 * 300.00381 * 9 7 6 42 42 H 1.09001 * 109.47325 * 59.99867 * 9 7 6 43 43 H 1.09000 * 109.47512 * 180.02562 * 9 7 6 44 44 H 0.96995 * 120.00757 * 334.99839 * 10 7 6 45 45 H 1.09001 * 109.47466 * 60.00140 * 13 11 10 46 46 H 1.09005 * 109.47000 * 300.00047 * 13 11 10 47 47 H 1.08002 * 119.87657 * 0.02562 * 15 14 13 48 48 H 1.07996 * 119.75155 * 180.02562 * 16 15 14 49 49 H 1.07998 * 119.87354 * 179.97438 * 17 16 15 50 50 H 1.08005 * 120.12571 * 180.29985 * 18 17 16 51 51 H 0.97005 * 119.99423 * 354.19309 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0026 7 6 6.1200 4.3275 -0.0026 8 1 5.6861 4.8663 0.8398 9 6 7.6449 4.3293 0.1219 10 7 5.7314 4.9827 -1.2539 11 6 5.6046 6.3237 -1.3012 12 8 5.8125 6.9879 -0.3080 13 6 5.2044 6.9978 -2.5882 14 6 5.1338 8.4879 -2.3740 15 6 3.9318 9.0861 -2.0716 16 6 3.8641 10.4565 -1.8736 17 6 5.0034 11.2398 -1.9786 18 6 6.2168 10.6623 -2.2743 19 6 6.2963 9.2727 -2.4831 20 6 7.5368 8.6691 -2.7933 21 1 7.7066 7.6298 -2.5534 22 6 8.5445 9.4182 -3.4111 23 7 8.2328 10.4614 -4.1363 24 14 10.3349 8.9287 -3.2002 25 1 11.1986 9.8759 -3.9499 26 1 10.6919 8.9665 -1.7594 27 1 10.5372 7.5540 -3.7245 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.7171 3.3991 0.8887 38 1 3.7163 3.3986 -0.8913 39 1 5.9726 2.3710 -0.8928 40 1 5.9741 2.3713 0.8872 41 1 7.9340 3.8416 1.0529 42 1 8.0789 3.7905 -0.7204 43 1 8.0082 5.3569 0.1224 44 1 5.5655 4.4517 -2.0484 45 1 4.2278 6.6297 -2.9028 46 1 5.9420 6.7757 -3.3593 47 1 3.0381 8.4856 -1.9874 48 1 2.9168 10.9175 -1.6362 49 1 4.9391 12.3065 -1.8227 50 1 7.1038 11.2736 -2.3508 51 1 7.3018 10.6668 -4.3155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777289790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:46 Heat of formation + Delta-G solvation = -74.342847 kcal Electronic energy + Delta-G solvation = -26377.783763 eV Core-core repulsion = 22853.473390 eV Total energy + Delta-G solvation = -3524.310373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.44058 -37.75927 -36.92959 -35.53122 -33.79901 -32.88839 -31.88333 -30.54477 -29.16067 -28.32453 -26.69639 -24.89740 -24.54667 -21.88181 -21.20157 -21.08868 -20.88428 -20.26171 -19.47938 -17.68420 -16.50796 -16.19752 -15.81975 -15.02959 -14.82945 -14.53535 -14.35577 -14.15705 -13.95509 -13.78564 -13.57248 -13.30472 -13.12707 -12.82771 -12.67064 -12.26466 -12.13898 -11.97149 -11.82187 -11.70402 -11.69250 -11.57741 -11.20029 -11.17612 -11.11743 -10.96690 -10.84034 -10.77265 -10.67561 -10.43457 -10.38992 -10.35818 -9.59797 -9.32947 -9.10635 -8.91479 -8.64397 -7.50406 -7.45104 -7.07445 -4.36668 2.80796 2.90020 3.18043 3.31970 3.39092 3.40442 3.71634 4.05845 4.35845 4.61998 4.64067 4.76134 4.83333 4.88747 5.00980 5.17250 5.26480 5.38618 5.43394 5.46130 5.50048 5.59398 5.60753 5.66975 5.73980 5.75458 5.78709 5.83265 5.87427 5.90536 5.97044 6.02681 6.05959 6.12538 6.21487 6.22294 6.29712 6.38475 6.41534 6.41917 6.74112 6.92911 7.05353 7.26462 7.47482 7.73259 7.87924 7.91475 7.99411 8.03620 8.26466 8.40297 8.84330 8.93285 8.98122 10.11909 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.002922 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.106522 B = 9581.631537 C =10984.715247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.124 4.124 7 C 0.142 3.858 8 H 0.083 0.917 9 C -0.164 4.164 10 N -0.739 5.739 11 C 0.515 3.485 12 O -0.522 6.522 13 C -0.071 4.071 14 C -0.183 4.183 15 C -0.070 4.070 16 C -0.253 4.253 17 C -0.087 4.087 18 C -0.216 4.216 19 C 0.116 3.884 20 C -0.515 4.515 21 H 0.072 0.928 22 C 0.040 3.960 23 N -0.800 5.800 24 Si 1.060 2.940 25 H -0.274 1.274 26 H -0.275 1.275 27 H -0.277 1.277 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.393 0.607 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 -18.810 4.318 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.158 4.158 6 C -0.162 4.162 7 C 0.037 3.963 8 H 0.101 0.899 9 C -0.223 4.223 10 N -0.393 5.393 11 C 0.303 3.697 12 O -0.396 6.396 13 C -0.111 4.111 14 C -0.184 4.184 15 C -0.088 4.088 16 C -0.273 4.273 17 C -0.105 4.105 18 C -0.235 4.235 19 C 0.113 3.887 20 C -0.543 4.543 21 H 0.090 0.910 22 C -0.182 4.182 23 N -0.423 5.423 24 Si 0.884 3.116 25 H -0.199 1.199 26 H -0.201 1.201 27 H -0.203 1.203 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.227 0.773 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.122 0.878 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.166 -17.801 4.647 19.109 hybrid contribution -1.689 -0.683 0.084 1.824 sum -6.855 -18.484 4.730 20.274 Atomic orbital electron populations 1.21788 0.96022 1.01440 1.01886 1.21539 0.95778 0.97117 1.01821 1.21639 0.95596 0.96523 1.02198 1.21609 0.95245 0.96958 1.01823 1.21606 0.95094 0.96438 1.02647 1.21890 0.95830 0.95862 1.02644 1.20845 0.94627 0.92405 0.88387 0.89891 1.22188 0.95823 1.03029 1.01239 1.46211 1.72838 1.07457 1.12815 1.21146 0.76065 0.81115 0.91388 1.90674 1.48269 1.63767 1.36842 1.20249 1.01405 0.94580 0.94828 1.19009 0.93396 0.92072 1.13960 1.20348 0.95633 0.94320 0.98507 1.20257 0.97017 0.93889 1.16114 1.20595 0.93548 0.97218 0.99174 1.21130 0.96431 0.95671 1.10303 1.17397 0.91740 0.91296 0.88251 1.20428 0.97944 0.99716 1.36258 0.90993 1.26915 1.06796 0.92728 0.91730 1.70450 1.25094 1.22809 1.23958 0.83720 0.73455 0.76714 0.77749 1.19913 1.20055 1.20256 0.92778 0.92726 0.92934 0.92154 0.92211 0.92063 0.91973 0.92125 0.92198 0.91971 0.91651 0.91574 0.90856 0.92299 0.92718 0.91624 0.77328 0.90807 0.88784 0.89674 0.89509 0.89437 0.87814 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 4 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 5 C -0.12 -1.11 5.10 -26.73 -0.14 -1.25 16 6 C -0.12 -1.16 4.75 -26.73 -0.13 -1.29 16 7 C 0.14 1.85 2.57 -67.93 -0.17 1.67 16 8 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 9 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 10 N -0.74 -10.63 4.53 -53.81 -0.24 -10.87 16 11 C 0.52 10.06 7.43 -10.99 -0.08 9.98 16 12 O -0.52 -12.62 15.70 5.56 0.09 -12.53 16 13 C -0.07 -1.40 5.18 -29.04 -0.15 -1.55 16 14 C -0.18 -4.44 4.43 -103.92 -0.46 -4.90 16 15 C -0.07 -1.63 9.66 -39.66 -0.38 -2.01 16 16 C -0.25 -5.95 10.05 -39.29 -0.39 -6.34 16 17 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 18 C -0.22 -5.78 7.95 -38.87 -0.31 -6.09 16 19 C 0.12 3.12 5.29 -106.82 -0.57 2.55 16 20 C -0.52 -13.70 8.09 -37.74 -0.31 -14.01 16 21 H 0.07 1.88 6.72 -52.48 -0.35 1.53 16 22 C 0.04 1.03 4.94 -17.35 -0.09 0.94 16 23 N -0.80 -21.41 12.32 55.55 0.68 -20.73 16 24 Si 1.06 22.22 30.00 -169.99 -5.10 17.12 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 4.52 8.60 -40.82 -0.35 4.17 16 45 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 46 H 0.09 1.85 7.05 -51.93 -0.37 1.48 16 47 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 48 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 49 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 50 H 0.10 2.85 6.51 -52.48 -0.34 2.51 16 51 H 0.30 8.20 6.69 -40.82 -0.27 7.93 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -30.60 410.36 -10.98 -41.58 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -9.30 Total: 9.66 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -3.29 Total: -30.41 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.44 Total: -31.60 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.10 Total: 17.12 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.60 -10.98 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777289790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.762 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds