Wall clock time and date at job start Tue Mar 31 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47438 * 2 1 4 4 C 1.53005 * 109.47078 * 120.00072 * 2 1 3 5 5 C 1.52998 * 109.52269 * 59.87060 * 4 2 1 6 6 C 1.53124 * 109.52326 * 179.97438 * 4 2 1 7 7 C 1.53040 * 109.27482 * 177.62278 * 6 4 2 8 8 N 1.46846 * 109.52105 * 300.81397 * 7 6 4 9 9 C 1.46903 * 110.99682 * 185.84301 * 8 7 6 10 10 C 1.50696 * 109.47151 * 170.00504 * 9 8 7 11 11 C 1.38302 * 119.93469 * 89.99796 * 10 9 8 12 12 C 1.38094 * 120.07461 * 180.02562 * 11 10 9 13 13 C 1.38878 * 119.92859 * 0.27306 * 12 11 10 14 14 O 1.35748 * 120.07147 * 179.72501 * 13 12 11 15 15 C 1.34830 * 117.00101 * 354.46447 * 14 13 12 16 16 H 1.07999 * 119.99626 * 5.05831 * 15 14 13 17 17 C 1.38650 * 120.00326 * 185.05731 * 15 14 13 18 18 N 1.31558 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47394 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46992 * 119.99912 * 19 17 15 22 22 H 1.48498 * 109.47048 * 239.99593 * 19 17 15 23 23 C 1.38878 * 119.86109 * 359.47415 * 13 12 11 24 24 C 1.38104 * 119.93072 * 0.53047 * 23 13 12 25 25 C 1.46853 * 111.19803 * 61.74880 * 8 7 6 26 26 C 1.53040 * 109.52241 * 298.25723 * 25 8 7 27 27 H 1.08999 * 109.46764 * 300.00393 * 1 2 3 28 28 H 1.09002 * 109.47003 * 60.00102 * 1 2 3 29 29 H 1.08994 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47401 * 239.99356 * 2 1 3 31 31 H 1.09005 * 109.47193 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46940 * 299.99936 * 3 2 1 33 33 H 1.08991 * 109.47146 * 59.99902 * 3 2 1 34 34 H 1.08999 * 109.46757 * 180.12885 * 5 4 2 35 35 H 1.08994 * 109.47395 * 300.12656 * 5 4 2 36 36 H 1.09001 * 109.47118 * 60.13123 * 5 4 2 37 37 H 1.09001 * 109.50076 * 57.67891 * 6 4 2 38 38 H 1.08996 * 109.53169 * 297.58001 * 6 4 2 39 39 H 1.09000 * 109.45835 * 180.80712 * 7 6 4 40 40 H 1.08993 * 109.46616 * 60.83944 * 7 6 4 41 41 H 1.08993 * 109.47415 * 50.00148 * 9 8 7 42 42 H 1.09004 * 109.46775 * 290.00241 * 9 8 7 43 43 H 1.08003 * 119.96310 * 359.97438 * 11 10 9 44 44 H 1.08000 * 120.04048 * 180.02562 * 12 11 10 45 45 H 0.97006 * 120.00005 * 180.02562 * 18 17 15 46 46 H 1.08003 * 120.03575 * 180.25499 * 23 13 12 47 47 H 1.07996 * 119.96455 * 179.74788 * 24 23 13 48 48 H 1.09002 * 109.45641 * 58.26803 * 25 8 7 49 49 H 1.08997 * 109.46402 * 178.23713 * 25 8 7 50 50 H 1.09003 * 109.50031 * 299.23676 * 26 25 8 51 51 H 1.08997 * 109.53542 * 179.14094 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5280 -2.1630 1.2521 6 6 3.5712 -0.7225 1.2502 7 6 4.0751 -1.3926 2.5305 8 7 3.5678 -0.6621 3.6990 9 6 4.1429 -1.1930 4.9421 10 6 3.7987 -0.2754 6.0869 11 6 2.6370 -0.4789 6.8092 12 6 2.3184 0.3605 7.8584 13 6 3.1633 1.4135 8.1844 14 8 2.8501 2.2437 9.2117 15 6 1.6511 2.0629 9.8013 16 1 1.0242 1.2343 9.5069 17 6 1.2231 2.9407 10.7856 18 7 1.9871 3.9497 11.1446 19 14 -0.4378 2.6896 11.6029 20 1 -1.0972 1.4907 11.0260 21 1 -0.2467 2.4946 13.0626 22 1 -1.2894 3.8837 11.3704 23 6 4.3317 1.6121 7.4606 24 6 4.6446 0.7692 6.4123 25 6 2.1002 -0.6877 3.7451 26 6 1.5373 0.0032 2.5010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.8899 -2.6753 2.1435 35 1 0.4381 -2.1616 1.2512 36 1 1.8914 -2.6794 0.3635 37 1 3.9360 0.3038 1.2086 38 1 3.9357 -1.2737 0.3833 39 1 5.1650 -1.3823 2.5410 40 1 3.7215 -2.4230 2.5646 41 1 5.2263 -1.2587 4.8423 42 1 3.7351 -2.1850 5.1364 43 1 1.9778 -1.2948 6.5519 44 1 1.4113 0.2008 8.4224 45 1 1.6877 4.5636 11.8334 46 1 4.9928 2.4276 7.7143 47 1 5.5511 0.9256 5.8465 48 1 1.7558 -1.7215 3.7735 49 1 1.7557 -0.1656 4.6378 50 1 1.8701 1.0410 2.4792 51 1 0.4481 -0.0291 2.5275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778219154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:49 Heat of formation + Delta-G solvation = -17.603242 kcal Electronic energy + Delta-G solvation = -27187.419811 eV Core-core repulsion = 23665.569851 eV Total energy + Delta-G solvation = -3521.849959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29267 -38.98421 -37.15745 -35.73961 -32.52238 -31.99808 -30.95570 -30.09707 -29.73464 -28.37033 -26.62822 -25.52763 -24.62326 -23.40419 -22.72354 -21.84674 -20.63034 -20.22827 -17.99231 -17.91291 -16.90340 -16.03817 -15.26751 -15.06006 -15.04304 -14.66328 -14.51601 -14.42451 -14.10180 -13.91374 -13.67990 -13.47459 -13.37594 -12.81833 -12.66356 -12.55992 -12.41152 -12.17387 -11.98260 -11.88738 -11.76425 -11.65192 -11.46948 -11.33883 -11.21402 -11.06917 -10.87087 -10.74044 -10.58371 -10.56564 -10.40057 -10.30756 -10.06213 -9.95842 -9.29979 -8.81638 -8.15236 -8.06116 -7.13206 -6.43249 -4.01932 2.25915 2.32687 3.12798 3.14429 3.19918 3.97799 4.07120 4.49442 4.55307 4.62510 4.69926 4.98696 5.06504 5.11670 5.17592 5.22865 5.28294 5.32051 5.35034 5.36721 5.43097 5.50287 5.53592 5.55438 5.64546 5.68286 5.73685 5.77332 5.79670 5.83135 5.84844 5.87643 5.92775 5.96199 6.00779 6.07345 6.07622 6.19390 6.25426 6.30291 6.35876 6.45559 6.48698 6.74911 6.94218 7.06852 7.24097 7.26055 7.34397 7.44976 7.48492 7.87118 8.02129 9.02693 9.73788 10.75011 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002845 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.450143 B = 9838.069194 C =10594.733001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.056 4.056 5 C -0.146 4.146 6 C -0.106 4.106 7 C 0.054 3.946 8 N -0.530 5.530 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.066 4.066 12 C -0.234 4.234 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.194 4.194 24 C -0.053 4.053 25 C 0.052 3.948 26 C -0.107 4.107 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.269 0.731 46 H 0.116 0.884 47 H 0.111 0.889 48 H 0.028 0.972 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.059 -10.649 -20.658 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.056 4.056 5 C -0.203 4.203 6 C -0.144 4.144 7 C -0.074 4.074 8 N -0.254 5.254 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.214 4.214 24 C -0.071 4.071 25 C -0.076 4.076 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.119 0.881 44 H 0.143 0.857 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.129 0.871 48 H 0.046 0.954 49 H 0.103 0.897 50 H 0.093 0.907 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.198 -9.789 -20.427 22.652 hybrid contribution -1.161 -1.002 0.520 1.619 sum -0.963 -10.792 -19.907 22.664 Atomic orbital electron populations 1.21953 0.95530 1.01649 1.01736 1.21084 0.95557 0.96214 0.97285 1.21960 1.01288 0.95945 1.01705 1.20585 0.95143 0.94962 0.94913 1.22018 1.01007 0.95892 1.01432 1.21691 0.94597 1.01781 0.96316 1.22096 0.99448 0.95029 0.90806 1.61967 1.07003 1.54738 1.01730 1.20772 0.98867 0.94245 0.87430 1.19068 0.98004 1.00776 0.99901 1.20577 0.95407 0.97750 0.94747 1.21111 1.03010 0.99029 1.02223 1.19387 0.93082 0.89672 0.87647 1.83979 1.35664 1.49710 1.38926 1.21359 0.93107 1.13231 1.18991 0.89092 1.25279 0.99543 0.94940 0.96783 1.70051 1.36595 1.13944 1.29244 0.85662 0.80260 0.78615 0.78977 1.19135 1.20176 1.20139 1.20216 0.98369 1.03428 0.99350 1.20442 0.98088 0.93421 0.95183 1.22184 0.87481 0.98646 0.99247 1.21742 0.99526 1.00322 0.92907 0.92227 0.93133 0.92628 0.91726 0.92343 0.93247 0.92048 0.92541 0.92508 0.93086 0.90694 0.92122 0.91243 0.95219 0.90991 0.95282 0.88061 0.85727 0.92111 0.86640 0.87140 0.95418 0.89740 0.90697 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.50 37.16 0.32 -0.90 16 2 C -0.08 -0.69 2.29 -90.62 -0.21 -0.90 16 3 C -0.15 -1.32 8.49 37.16 0.32 -1.00 16 4 C -0.06 -0.52 0.32 -154.38 -0.05 -0.56 16 5 C -0.15 -1.28 7.55 37.16 0.28 -1.00 16 6 C -0.11 -1.01 4.59 -26.65 -0.12 -1.13 16 7 C 0.05 0.57 5.21 -3.83 -0.02 0.55 16 8 N -0.53 -6.87 4.65 -236.11 -1.10 -7.97 16 9 C 0.11 1.57 5.12 -4.98 -0.03 1.54 16 10 C -0.18 -3.01 4.89 -104.58 -0.51 -3.52 16 11 C -0.07 -1.21 7.86 -39.61 -0.31 -1.52 16 12 C -0.23 -5.11 9.17 -39.40 -0.36 -5.47 16 13 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 14 O -0.18 -5.17 9.76 0.05 0.00 -5.16 16 15 C -0.39 -10.99 9.49 30.88 0.29 -10.69 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 19 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 24 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 25 C 0.05 0.67 4.91 -3.83 -0.02 0.65 16 26 C -0.11 -1.19 4.17 -26.65 -0.11 -1.30 16 27 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 6.43 -51.93 -0.33 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 6.38 -51.93 -0.33 0.17 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 34 H 0.06 0.54 4.92 -51.93 -0.26 0.29 16 35 H 0.06 0.48 6.42 -51.93 -0.33 0.15 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 40 H 0.03 0.31 6.51 -51.93 -0.34 -0.03 16 41 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 43 H 0.10 1.62 7.95 -52.48 -0.42 1.20 16 44 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 47 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 48 H 0.03 0.34 6.51 -51.93 -0.34 0.00 16 49 H 0.08 1.28 5.74 -51.93 -0.30 0.98 16 50 H 0.07 0.92 6.31 -51.93 -0.33 0.60 16 51 H 0.06 0.69 6.58 -51.93 -0.34 0.35 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -29.65 376.28 -9.58 -39.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.22 Total: 3.99 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.67 Total: -26.65 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.34 Total: -32.70 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.65 -9.58 -39.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778219154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.629 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds