Wall clock time and date at job start Tue Mar 31 2020 12:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47438 * 2 1 4 4 C 1.53005 * 109.47078 * 120.00072 * 2 1 3 5 5 C 1.52998 * 109.52269 * 59.87060 * 4 2 1 6 6 C 1.53124 * 109.52326 * 179.97438 * 4 2 1 7 7 C 1.53040 * 109.27482 * 177.62278 * 6 4 2 8 8 N 1.46846 * 109.52105 * 300.81397 * 7 6 4 9 9 C 1.46903 * 110.99682 * 185.84301 * 8 7 6 10 10 C 1.50696 * 109.47151 * 170.00504 * 9 8 7 11 11 C 1.38302 * 119.93469 * 89.99796 * 10 9 8 12 12 C 1.38094 * 120.07461 * 180.02562 * 11 10 9 13 13 C 1.38878 * 119.92859 * 0.27306 * 12 11 10 14 14 O 1.35748 * 120.07147 * 179.72501 * 13 12 11 15 15 C 1.34830 * 117.00101 * 354.46447 * 14 13 12 16 16 H 1.07999 * 119.99626 * 5.05831 * 15 14 13 17 17 C 1.38650 * 120.00326 * 185.05731 * 15 14 13 18 18 N 1.31558 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47394 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46992 * 119.99912 * 19 17 15 22 22 H 1.48498 * 109.47048 * 239.99593 * 19 17 15 23 23 C 1.38878 * 119.86109 * 359.47415 * 13 12 11 24 24 C 1.38104 * 119.93072 * 0.53047 * 23 13 12 25 25 C 1.46853 * 111.19803 * 61.74880 * 8 7 6 26 26 C 1.53040 * 109.52241 * 298.25723 * 25 8 7 27 27 H 1.08999 * 109.46764 * 300.00393 * 1 2 3 28 28 H 1.09002 * 109.47003 * 60.00102 * 1 2 3 29 29 H 1.08994 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47401 * 239.99356 * 2 1 3 31 31 H 1.09005 * 109.47193 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46940 * 299.99936 * 3 2 1 33 33 H 1.08991 * 109.47146 * 59.99902 * 3 2 1 34 34 H 1.08999 * 109.46757 * 180.12885 * 5 4 2 35 35 H 1.08994 * 109.47395 * 300.12656 * 5 4 2 36 36 H 1.09001 * 109.47118 * 60.13123 * 5 4 2 37 37 H 1.09001 * 109.50076 * 57.67891 * 6 4 2 38 38 H 1.08996 * 109.53169 * 297.58001 * 6 4 2 39 39 H 1.09000 * 109.45835 * 180.80712 * 7 6 4 40 40 H 1.08993 * 109.46616 * 60.83944 * 7 6 4 41 41 H 1.08993 * 109.47415 * 50.00148 * 9 8 7 42 42 H 1.09004 * 109.46775 * 290.00241 * 9 8 7 43 43 H 1.08003 * 119.96310 * 359.97438 * 11 10 9 44 44 H 1.08000 * 120.04048 * 180.02562 * 12 11 10 45 45 H 0.97006 * 120.00005 * 180.02562 * 18 17 15 46 46 H 1.08003 * 120.03575 * 180.25499 * 23 13 12 47 47 H 1.07996 * 119.96455 * 179.74788 * 24 23 13 48 48 H 1.09002 * 109.45641 * 58.26803 * 25 8 7 49 49 H 1.08997 * 109.46402 * 178.23713 * 25 8 7 50 50 H 1.09003 * 109.50031 * 299.23676 * 26 25 8 51 51 H 1.08997 * 109.53542 * 179.14094 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5280 -2.1630 1.2521 6 6 3.5712 -0.7225 1.2502 7 6 4.0751 -1.3926 2.5305 8 7 3.5678 -0.6621 3.6990 9 6 4.1429 -1.1930 4.9421 10 6 3.7987 -0.2754 6.0869 11 6 2.6370 -0.4789 6.8092 12 6 2.3184 0.3605 7.8584 13 6 3.1633 1.4135 8.1844 14 8 2.8501 2.2437 9.2117 15 6 1.6511 2.0629 9.8013 16 1 1.0242 1.2343 9.5069 17 6 1.2231 2.9407 10.7856 18 7 1.9871 3.9497 11.1446 19 14 -0.4378 2.6896 11.6029 20 1 -1.0972 1.4907 11.0260 21 1 -0.2467 2.4946 13.0626 22 1 -1.2894 3.8837 11.3704 23 6 4.3317 1.6121 7.4606 24 6 4.6446 0.7692 6.4123 25 6 2.1002 -0.6877 3.7451 26 6 1.5373 0.0032 2.5010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.8899 -2.6753 2.1435 35 1 0.4381 -2.1616 1.2512 36 1 1.8914 -2.6794 0.3635 37 1 3.9360 0.3038 1.2086 38 1 3.9357 -1.2737 0.3833 39 1 5.1650 -1.3823 2.5410 40 1 3.7215 -2.4230 2.5646 41 1 5.2263 -1.2587 4.8423 42 1 3.7351 -2.1850 5.1364 43 1 1.9778 -1.2948 6.5519 44 1 1.4113 0.2008 8.4224 45 1 1.6877 4.5636 11.8334 46 1 4.9928 2.4276 7.7143 47 1 5.5511 0.9256 5.8465 48 1 1.7558 -1.7215 3.7735 49 1 1.7557 -0.1656 4.6378 50 1 1.8701 1.0410 2.4792 51 1 0.4481 -0.0291 2.5275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778219154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:48 Heat of formation + Delta-G solvation = -33.659363 kcal Electronic energy + Delta-G solvation = -27188.116056 eV Core-core repulsion = 23665.569851 eV Total energy + Delta-G solvation = -3522.546205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23224 -40.61934 -38.63977 -36.94372 -34.34111 -33.15109 -31.97623 -31.59335 -30.96698 -29.25125 -27.71235 -27.16128 -25.80941 -24.29007 -23.84530 -23.39875 -21.87729 -21.33622 -19.82439 -18.84363 -18.70851 -16.95032 -16.53543 -16.42520 -16.22677 -15.90609 -15.72899 -15.49077 -15.45117 -15.25121 -14.94018 -14.70223 -14.50618 -14.32183 -14.07720 -13.63365 -13.54505 -13.23014 -13.15875 -12.91180 -12.78966 -12.64509 -12.54243 -12.49674 -12.36195 -12.17394 -12.15470 -12.11305 -12.00751 -11.76514 -11.56829 -11.16830 -11.07129 -10.85095 -10.79852 -10.77312 -9.74305 -9.12694 -8.84645 -8.47089 -6.15077 0.61573 0.69830 1.34255 1.42651 1.52628 2.17380 2.76070 3.05823 3.35625 3.54151 3.75279 3.81142 3.89427 4.02344 4.05852 4.21787 4.27423 4.31378 4.39139 4.43750 4.49442 4.53906 4.61825 4.63589 4.65899 4.74262 4.76781 4.83797 4.86000 4.89352 4.90221 5.02831 5.08419 5.10407 5.11272 5.14544 5.15627 5.19769 5.22517 5.31566 5.32021 5.34492 5.40532 5.50753 5.59285 5.64681 5.70725 5.72442 5.83480 6.03577 6.20911 6.26572 6.36324 6.97838 7.79585 8.76576 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002845 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.450143 B = 9838.069194 C =10594.733001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.051 4.051 5 C -0.143 4.143 6 C -0.104 4.104 7 C 0.055 3.945 8 N -0.541 5.541 9 C 0.115 3.885 10 C -0.150 4.150 11 C -0.061 4.061 12 C -0.243 4.243 13 C 0.115 3.885 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.206 4.206 24 C -0.047 4.047 25 C 0.054 3.946 26 C -0.104 4.104 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.272 0.728 46 H 0.111 0.889 47 H 0.144 0.856 48 H 0.037 0.963 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -13.409 -23.562 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.051 4.051 5 C -0.200 4.200 6 C -0.142 4.142 7 C -0.073 4.073 8 N -0.266 5.266 9 C -0.011 4.011 10 C -0.151 4.151 11 C -0.080 4.080 12 C -0.262 4.262 13 C 0.064 3.936 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.225 4.225 24 C -0.066 4.066 25 C -0.074 4.074 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.148 0.852 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.162 0.838 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.013 -12.591 -23.385 26.559 hybrid contribution -0.933 -0.303 1.117 1.486 sum -0.946 -12.893 -22.268 25.748 Atomic orbital electron populations 1.21943 0.95330 1.01981 1.01542 1.21064 0.95695 0.95811 0.97211 1.21945 1.01252 0.96289 1.01316 1.20543 0.95162 0.95258 0.94157 1.21984 1.01148 0.95199 1.01683 1.21686 0.94507 1.01427 0.96535 1.22170 1.00021 0.95172 0.89888 1.61908 1.06974 1.55621 1.02119 1.20793 1.00301 0.93614 0.86433 1.19580 0.96252 0.99719 0.99565 1.20873 0.96222 0.97581 0.93293 1.21191 1.02486 0.99188 1.03318 1.19910 0.94895 0.90569 0.88187 1.83941 1.36538 1.52151 1.41435 1.21840 0.93544 1.13902 1.19538 0.88251 1.26583 1.03943 0.94352 0.97202 1.70195 1.39273 1.15670 1.30852 0.84538 0.74682 0.79178 0.77850 1.17518 1.19272 1.19305 1.20460 0.97609 1.04262 1.00173 1.20819 0.99306 0.92560 0.93887 1.22128 0.87663 0.98869 0.98760 1.21694 0.99607 0.99470 0.93403 0.93267 0.92539 0.92014 0.90609 0.92362 0.92547 0.93539 0.93197 0.92355 0.91839 0.91661 0.90266 0.90236 0.94377 0.88990 0.93945 0.85171 0.86639 0.91860 0.87087 0.83795 0.94526 0.92519 0.92369 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.50 71.98 0.61 -1.49 16 2 C -0.08 -1.13 2.29 -10.79 -0.02 -1.15 16 3 C -0.15 -2.37 8.49 71.98 0.61 -1.76 16 4 C -0.05 -0.80 0.32 -52.10 -0.02 -0.82 16 5 C -0.14 -2.02 7.55 71.98 0.54 -1.48 16 6 C -0.10 -1.62 4.59 30.65 0.14 -1.48 16 7 C 0.05 0.95 5.21 86.33 0.45 1.40 16 8 N -0.54 -12.32 4.65 -900.92 -4.19 -16.51 16 9 C 0.12 2.73 5.12 85.56 0.44 3.17 16 10 C -0.15 -4.77 4.89 -19.84 -0.10 -4.86 16 11 C -0.06 -2.15 7.86 22.25 0.17 -1.98 16 12 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 13 C 0.11 5.85 6.65 22.58 0.15 6.00 16 14 O -0.23 -14.40 9.76 -22.72 -0.22 -14.62 16 15 C -0.41 -24.47 9.49 67.92 0.64 -23.82 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 18 N -0.92 -57.42 13.67 21.61 0.30 -57.12 16 19 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.21 -9.03 9.99 22.39 0.22 -8.81 16 24 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 25 C 0.05 1.26 4.91 86.33 0.42 1.68 16 26 C -0.10 -2.15 4.17 30.65 0.13 -2.02 16 27 H 0.05 0.78 6.50 -2.39 -0.02 0.77 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.91 6.38 -2.38 -0.02 0.89 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.86 6.38 -2.39 -0.02 0.85 16 34 H 0.05 0.78 4.92 -2.39 -0.01 0.77 16 35 H 0.06 0.81 6.42 -2.39 -0.02 0.80 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 1.17 6.32 -2.39 -0.02 1.16 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.25 8.02 -2.39 -0.02 1.23 16 40 H 0.04 0.62 6.51 -2.39 -0.02 0.61 16 41 H 0.09 1.89 7.93 -2.39 -0.02 1.87 16 42 H 0.04 0.94 8.07 -2.38 -0.02 0.92 16 43 H 0.13 3.83 7.95 -2.91 -0.02 3.81 16 44 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 45 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 46 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 47 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.04 0.80 6.51 -2.39 -0.02 0.78 16 49 H 0.06 1.64 5.74 -2.39 -0.01 1.62 16 50 H 0.06 1.40 6.31 -2.39 -0.02 1.38 16 51 H 0.07 1.33 6.58 -2.39 -0.02 1.32 16 Total: -1.00 -69.07 376.28 4.12 -64.96 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.91 Total: 28.11 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 5.29 Total: -50.36 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -3.89 Total: -73.63 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -69.07 4.12 -64.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778219154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.298 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds