Wall clock time and date at job start Tue Mar 31 2020 11:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38224 * 120.00391 * 2 1 4 4 C 1.38236 * 120.00112 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00086 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00107 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47583 * 89.99453 * 6 5 4 8 8 H 1.09004 * 109.46816 * 55.00104 * 7 6 5 9 9 C 1.52997 * 109.47446 * 295.00343 * 7 6 5 10 10 C 1.50699 * 109.47181 * 174.99977 * 7 6 5 11 11 O 1.21278 * 120.00196 * 17.68770 * 10 7 6 12 12 N 1.34778 * 119.99810 * 197.68971 * 10 7 6 13 13 C 1.46501 * 120.00268 * 2.75815 * 12 10 7 14 14 C 1.50697 * 109.47270 * 86.86337 * 13 12 10 15 15 H 1.07996 * 120.00352 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99936 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00274 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47437 * 89.99830 * 18 16 14 20 20 H 1.48501 * 109.47409 * 210.00547 * 18 16 14 21 21 H 1.48504 * 109.47038 * 330.00066 * 18 16 14 22 22 C 1.46497 * 119.99903 * 182.75238 * 12 10 7 23 23 C 1.53001 * 109.47163 * 96.28375 * 22 12 10 24 24 C 1.52998 * 109.47134 * 175.46950 * 23 22 12 25 25 C 1.53000 * 109.47215 * 295.46913 * 23 22 12 26 26 C 1.38232 * 120.00000 * 0.02573 * 5 4 3 27 27 C 1.38236 * 119.99914 * 359.97427 * 26 5 4 28 28 H 1.08995 * 109.46832 * 90.00011 * 1 2 3 29 29 H 1.08994 * 109.47493 * 210.00293 * 1 2 3 30 30 H 1.08996 * 109.46725 * 330.00475 * 1 2 3 31 31 H 1.08006 * 120.00315 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.99900 * 179.70451 * 4 3 2 33 33 H 1.08996 * 109.47044 * 209.99990 * 6 5 4 34 34 H 1.09000 * 109.46752 * 329.99334 * 6 5 4 35 35 H 1.08997 * 109.46938 * 60.52334 * 9 7 6 36 36 H 1.09000 * 109.47178 * 180.52514 * 9 7 6 37 37 H 1.09005 * 109.46921 * 300.52512 * 9 7 6 38 38 H 1.08998 * 109.47106 * 206.86772 * 13 12 10 39 39 H 1.09004 * 109.46650 * 326.86093 * 13 12 10 40 40 H 0.97001 * 119.99623 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.47418 * 216.28353 * 22 12 10 42 42 H 1.09001 * 109.47618 * 336.28138 * 22 12 10 43 43 H 1.09001 * 109.46920 * 55.47009 * 23 22 12 44 44 H 1.08999 * 109.47667 * 60.00075 * 24 23 22 45 45 H 1.09007 * 109.46843 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47371 * 299.99674 * 24 23 22 47 47 H 1.09000 * 109.47076 * 65.11773 * 25 23 22 48 48 H 1.08989 * 109.47399 * 185.11486 * 25 23 22 49 49 H 1.09000 * 109.46629 * 305.12060 * 25 23 22 50 50 H 1.08000 * 120.00580 * 180.02562 * 26 5 4 51 51 H 1.08000 * 119.99773 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1969 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 5.7787 -0.0003 0.0016 7 6 6.2888 0.0011 1.4440 8 1 5.8541 -0.8402 1.9839 9 6 5.8841 1.3091 2.1269 10 6 7.7907 -0.1228 1.4458 11 8 8.4200 0.1151 0.4368 12 7 8.4345 -0.4981 2.5689 13 6 7.6708 -0.8440 3.7703 14 6 7.2908 -2.3015 3.7217 15 1 7.5880 -2.9093 2.8799 16 6 6.5628 -2.8588 4.7514 17 7 6.2308 -4.1306 4.7088 18 14 6.0480 -1.8074 6.2071 19 1 4.7229 -1.1962 5.9324 20 1 5.9598 -2.6549 7.4234 21 1 7.0525 -0.7351 6.4230 22 6 9.8980 -0.5603 2.5881 23 6 10.4561 0.7389 3.1725 24 6 11.9770 0.6300 3.2976 25 6 10.1026 1.9066 2.2493 26 6 3.5805 -1.1973 0.0016 27 6 2.1981 -1.1973 0.0011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1323 -0.0043 33 1 6.1420 -0.8907 -0.5114 34 1 6.1420 0.8892 -0.5131 35 1 4.7975 1.3942 2.1339 36 1 6.2556 1.3140 3.1516 37 1 6.3111 2.1508 1.5816 38 1 8.2800 -0.6566 4.6545 39 1 6.7682 -0.2345 3.8150 40 1 5.7189 -4.5227 5.4335 41 1 10.2180 -1.4020 3.2025 42 1 10.2696 -0.6906 1.5717 43 1 10.0218 0.9101 4.1576 44 1 12.4113 0.4587 2.3126 45 1 12.3745 1.5555 3.7144 46 1 12.2289 -0.2019 3.9554 47 1 9.0211 2.0415 2.2319 48 1 10.5763 2.8167 2.6169 49 1 10.4584 1.6934 1.2413 50 1 4.1204 -2.1327 0.0029 51 1 1.6581 -2.1326 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778661848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:07 Heat of formation + Delta-G solvation = -56.652838 kcal Electronic energy + Delta-G solvation = -27667.804818 eV Core-core repulsion = 24144.261541 eV Total energy + Delta-G solvation = -3523.543277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.32235 -40.23682 -37.63575 -36.32675 -35.56158 -34.26125 -32.96873 -31.79001 -29.99510 -29.27688 -28.00618 -27.37722 -26.29310 -24.64510 -23.67746 -23.21072 -21.56708 -20.92064 -19.64211 -19.06715 -18.21483 -17.19160 -16.72781 -16.57873 -16.31506 -16.00935 -15.88002 -15.58061 -15.14807 -14.96847 -14.64472 -14.48574 -14.29386 -14.21872 -13.87856 -13.64550 -13.55933 -13.38988 -13.24977 -13.07736 -12.88556 -12.80801 -12.78527 -12.66985 -12.48618 -12.28578 -12.07722 -11.93022 -11.92096 -11.82975 -11.81574 -11.71196 -11.61957 -11.53663 -10.80915 -10.51590 -9.77525 -9.36991 -9.32150 -8.31231 -6.38016 0.44130 0.53574 1.37640 1.38214 1.47751 1.78500 2.30824 2.32710 2.87021 3.02804 3.58451 3.88071 3.91932 4.00343 4.02900 4.07589 4.12711 4.19003 4.19808 4.24253 4.43496 4.51990 4.62465 4.64668 4.66126 4.69314 4.75185 4.77693 4.83919 4.85212 4.87397 4.89697 4.92787 4.96929 5.02671 5.03906 5.06869 5.19113 5.20561 5.21821 5.28653 5.34348 5.41504 5.46157 5.46691 5.55781 5.73702 5.75748 5.79554 6.17456 6.19162 6.61680 6.70194 7.24215 7.38470 8.85232 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.004660 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.732230 B = 6007.517459 C = 7789.769418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.049 4.049 7 C -0.103 4.103 8 H 0.082 0.918 9 C -0.135 4.135 10 C 0.523 3.477 11 O -0.586 6.586 12 N -0.593 5.593 13 C 0.216 3.784 14 C -0.539 4.539 15 H 0.025 0.975 16 C 0.021 3.979 17 N -0.941 5.941 18 Si 0.934 3.066 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.237 1.237 22 C 0.116 3.884 23 C -0.106 4.106 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.131 4.131 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.044 0.956 50 H 0.106 0.894 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 14.507 -4.522 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.091 4.091 6 C -0.086 4.086 7 C -0.125 4.125 8 H 0.100 0.900 9 C -0.192 4.192 10 C 0.312 3.688 11 O -0.468 6.468 12 N -0.322 5.322 13 C 0.094 3.906 14 C -0.577 4.577 15 H 0.044 0.956 16 C -0.178 4.178 17 N -0.581 5.581 18 Si 0.757 3.243 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.160 1.160 22 C -0.007 4.007 23 C -0.126 4.126 24 C -0.194 4.194 25 C -0.187 4.187 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.124 0.876 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.700 14.478 -4.926 15.999 hybrid contribution -0.053 -1.005 0.627 1.186 sum -4.753 13.473 -4.300 14.920 Atomic orbital electron populations 1.20811 0.89244 1.03507 1.03087 1.20268 0.97579 0.92836 0.99280 1.21322 0.93851 0.98415 1.00480 1.21239 0.94668 0.97377 0.99763 1.19834 0.94808 0.93889 1.00568 1.20246 0.91101 1.02776 0.94517 1.21211 0.91167 1.01714 0.98370 0.89969 1.21808 1.02831 0.94402 1.00149 1.20753 0.90607 0.75247 0.82166 1.90556 1.69572 1.53433 1.33285 1.47911 1.06859 1.64724 1.12739 1.19683 0.92558 0.94172 0.84143 1.21503 1.35027 0.95056 1.06141 0.95614 1.25757 0.95058 0.95952 1.01019 1.70056 1.39622 1.14027 1.34383 0.85906 0.80406 0.79627 0.78398 1.18623 1.20978 1.15962 1.21556 0.79597 0.98137 1.01393 1.21458 0.97367 0.94414 0.99323 1.21718 0.93009 1.02648 1.02058 1.21671 1.00347 0.97715 0.98923 1.21181 0.95148 0.97726 1.00843 1.21216 0.93629 0.98783 1.01248 0.90150 0.91405 0.90255 0.83462 0.84363 0.93034 0.89906 0.90228 0.92194 0.91173 0.93891 0.93322 0.92327 0.91573 0.91550 0.91248 0.92564 0.90828 0.92298 0.94668 0.91216 0.93670 0.87621 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.10 -2.30 5.88 -19.87 -0.12 -2.41 16 3 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.79 7.98 22.27 0.18 -2.62 16 5 C -0.09 -2.76 4.71 -19.87 -0.09 -2.85 16 6 C -0.05 -1.63 4.19 29.85 0.13 -1.51 16 7 C -0.10 -3.79 1.87 -11.54 -0.02 -3.81 16 8 H 0.08 3.54 6.75 -2.38 -0.02 3.52 16 9 C -0.13 -3.99 8.46 71.98 0.61 -3.38 16 10 C 0.52 21.44 5.55 87.66 0.49 21.93 16 11 O -0.59 -25.75 14.89 -3.02 -0.05 -25.80 16 12 N -0.59 -24.35 2.25 -826.15 -1.86 -26.21 16 13 C 0.22 9.45 3.85 85.63 0.33 9.78 16 14 C -0.54 -29.25 9.30 25.60 0.24 -29.01 16 15 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 16 C 0.02 1.16 5.47 84.65 0.46 1.62 16 17 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 18 Si 0.93 40.30 27.47 68.60 1.88 42.18 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 22 C 0.12 4.24 4.95 86.38 0.43 4.67 16 23 C -0.11 -3.07 3.12 -10.79 -0.03 -3.10 16 24 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 25 C -0.13 -3.68 8.14 71.98 0.59 -3.09 16 26 C -0.13 -4.17 9.70 22.27 0.22 -3.95 16 27 C -0.13 -3.57 9.70 22.27 0.22 -3.35 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.14 2.86 8.05 -2.91 -0.02 2.83 16 33 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.08 2.61 8.01 -2.39 -0.02 2.59 16 35 H 0.08 2.14 6.30 -2.39 -0.02 2.13 16 36 H 0.06 1.80 6.23 -2.39 -0.01 1.78 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.04 1.80 7.09 -2.39 -0.02 1.79 16 39 H 0.05 2.01 4.22 -2.38 -0.01 2.00 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.07 2.49 8.12 -2.38 -0.02 2.47 16 42 H 0.07 2.55 7.21 -2.39 -0.02 2.54 16 43 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.03 1.10 7.01 -2.39 -0.02 1.08 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 50 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 51 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.32 399.96 6.30 -60.02 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.82 Total: 33.12 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.20 Total: -27.08 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.56 Total: -82.44 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.18 kcal Total: -66.32 6.30 -60.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778661848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.364 kcal (2) G-P(sol) polarization free energy of solvation -66.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds