Wall clock time and date at job start Tue Mar 31 2020 11:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00155 * 2 1 4 4 C 1.38231 * 120.00127 * 179.97438 * 3 2 1 5 5 C 1.38238 * 120.00430 * 359.95862 * 4 3 2 6 6 C 1.50699 * 120.00403 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46709 * 90.00154 * 6 5 4 8 8 H 1.08999 * 109.47363 * 304.99650 * 7 6 5 9 9 C 1.53000 * 109.47196 * 65.00075 * 7 6 5 10 10 C 1.50706 * 109.46736 * 184.99945 * 7 6 5 11 11 O 1.21283 * 119.99778 * 336.91910 * 10 7 6 12 12 N 1.34770 * 119.99874 * 156.92008 * 10 7 6 13 13 C 1.46507 * 120.00355 * 6.43204 * 12 10 7 14 14 C 1.50694 * 109.46596 * 91.30218 * 13 12 10 15 15 H 1.08001 * 120.00863 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99671 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00005 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00216 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47174 * 89.99877 * 18 16 14 20 20 H 1.48499 * 109.47536 * 210.00041 * 18 16 14 21 21 H 1.48502 * 109.47127 * 330.00271 * 18 16 14 22 22 C 1.46498 * 120.00104 * 186.43817 * 12 10 7 23 23 C 1.53002 * 109.47499 * 95.60362 * 22 12 10 24 24 C 1.52996 * 109.47278 * 173.61358 * 23 22 12 25 25 C 1.53003 * 109.46995 * 293.61004 * 23 22 12 26 26 C 1.38237 * 119.99492 * 0.27401 * 5 4 3 27 27 C 1.38236 * 120.00055 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46785 * 89.99868 * 1 2 3 29 29 H 1.09006 * 109.46678 * 210.00071 * 1 2 3 30 30 H 1.08998 * 109.46585 * 329.99433 * 1 2 3 31 31 H 1.08002 * 119.99682 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00175 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.46809 * 330.00025 * 6 5 4 34 34 H 1.08997 * 109.47077 * 209.99856 * 6 5 4 35 35 H 1.09006 * 109.47167 * 178.31615 * 9 7 6 36 36 H 1.09005 * 109.47171 * 58.32162 * 9 7 6 37 37 H 1.08994 * 109.47047 * 298.32015 * 9 7 6 38 38 H 1.08995 * 109.47004 * 211.30538 * 13 12 10 39 39 H 1.08998 * 109.46300 * 331.30926 * 13 12 10 40 40 H 0.97001 * 120.00039 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47552 * 215.60697 * 22 12 10 42 42 H 1.09008 * 109.46859 * 335.60047 * 22 12 10 43 43 H 1.08999 * 109.46844 * 53.61007 * 23 22 12 44 44 H 1.09005 * 109.47525 * 59.99610 * 24 23 22 45 45 H 1.09000 * 109.47281 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47262 * 299.99944 * 24 23 22 47 47 H 1.08998 * 109.46642 * 65.63765 * 25 23 22 48 48 H 1.08999 * 109.46991 * 185.63942 * 25 23 22 49 49 H 1.08998 * 109.47209 * 305.63885 * 25 23 22 50 50 H 1.08003 * 120.00026 * 179.72438 * 26 5 4 51 51 H 1.07997 * 120.00580 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2718 0.0000 0.0019 6 6 5.7788 0.0000 0.0019 7 6 6.2887 0.0017 1.4445 8 1 5.8541 0.8441 1.9825 9 6 5.8839 -1.3049 2.1300 10 6 7.7906 0.1255 1.4461 11 8 8.4276 -0.2080 0.4694 12 7 8.4259 0.6067 2.5330 13 6 7.6742 0.8768 3.7612 14 6 7.6909 -0.3476 4.6396 15 1 8.2098 -1.2377 4.3158 16 6 7.0436 -0.3314 5.8569 17 7 7.0585 -1.3998 6.6238 18 14 6.1455 1.2078 6.4169 19 1 4.7370 1.1569 5.9490 20 1 6.1720 1.2846 7.8996 21 1 6.8133 2.4055 5.8471 22 6 9.8680 0.8599 2.4863 23 6 10.1169 2.3330 2.1561 24 6 11.6131 2.6341 2.2635 25 6 9.6390 2.6243 0.7321 26 6 3.5806 -1.1971 -0.0029 27 6 2.1982 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8899 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1420 0.8894 -0.5129 34 1 6.1421 -0.8906 -0.5108 35 1 6.2728 -1.3166 3.1483 36 1 6.2938 -2.1487 1.5748 37 1 4.7969 -1.3803 2.1553 38 1 8.1329 1.7110 4.2918 39 1 6.6443 1.1288 3.5087 40 1 6.6028 -1.3885 7.4801 41 1 10.3098 0.6250 3.4546 42 1 10.3222 0.2337 1.7183 43 1 9.5686 2.9605 2.8588 44 1 12.1614 2.0066 1.5608 45 1 11.7903 3.6837 2.0287 46 1 11.9536 2.4266 3.2779 47 1 8.5567 2.5063 0.6809 48 1 9.9065 3.6455 0.4609 49 1 10.1135 1.9285 0.0402 50 1 4.1206 -2.1325 -0.0063 51 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778661849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:11 Heat of formation + Delta-G solvation = -43.012907 kcal Electronic energy + Delta-G solvation = -27633.761883 eV Core-core repulsion = 24110.810077 eV Total energy + Delta-G solvation = -3522.951805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.87253 -39.09016 -36.23879 -34.88619 -34.11264 -32.33245 -31.81572 -30.82499 -28.30301 -27.91274 -26.88856 -25.99817 -25.06721 -22.79120 -22.55775 -22.03639 -20.51680 -19.63841 -17.98391 -17.06398 -16.73646 -15.70728 -15.57581 -15.41058 -14.96279 -14.74292 -14.36365 -14.09596 -13.86810 -13.58945 -13.52175 -13.32271 -13.00578 -12.65714 -12.51662 -12.44091 -12.36053 -12.02618 -11.96706 -11.89264 -11.69190 -11.45963 -11.41427 -11.07313 -10.93558 -10.90718 -10.80320 -10.73568 -10.62749 -10.45867 -10.37983 -10.28494 -10.17224 -9.58542 -8.95692 -8.77439 -8.70085 -8.32307 -7.68632 -6.23079 -4.22866 1.43691 1.51818 3.16845 3.24340 3.26400 3.39197 3.75805 3.96450 4.25606 4.84906 4.86892 5.01853 5.06916 5.11614 5.18671 5.21595 5.24280 5.35645 5.40322 5.48887 5.51034 5.56828 5.62502 5.74614 5.77083 5.82862 5.87312 5.94769 5.99777 6.05830 6.09699 6.14944 6.24929 6.26015 6.28925 6.33195 6.35048 6.45943 6.51147 6.53689 6.57854 6.62487 6.66437 6.67282 6.74426 6.83758 7.13278 7.21150 7.38885 7.44983 8.15812 8.42638 8.81825 8.97765 9.36572 10.89102 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.004628 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.579694 B = 6048.167247 C = 7745.382157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.074 4.074 6 C -0.063 4.063 7 C -0.096 4.096 8 H 0.088 0.912 9 C -0.157 4.157 10 C 0.526 3.474 11 O -0.569 6.569 12 N -0.589 5.589 13 C 0.207 3.793 14 C -0.535 4.535 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.889 5.889 18 Si 0.866 3.134 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.121 3.879 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.043 0.957 49 H 0.057 0.943 50 H 0.123 0.877 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 6.274 -11.423 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.074 4.074 6 C -0.100 4.100 7 C -0.117 4.117 8 H 0.106 0.894 9 C -0.215 4.215 10 C 0.315 3.685 11 O -0.449 6.449 12 N -0.318 5.318 13 C 0.085 3.915 14 C -0.574 4.574 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.693 3.307 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.002 4.002 23 C -0.133 4.133 24 C -0.199 4.199 25 C -0.193 4.193 26 C -0.125 4.125 27 C -0.138 4.138 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.141 0.859 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.923 6.027 -11.715 14.444 hybrid contribution -0.591 0.779 0.717 1.212 sum -6.513 6.806 -10.998 14.481 Atomic orbital electron populations 1.20756 0.91587 1.02583 1.01910 1.19858 0.95807 0.93343 1.00852 1.20957 0.94155 0.97307 1.01450 1.21042 0.94055 0.97697 1.00479 1.19925 0.95804 0.93074 0.98587 1.20467 0.89842 1.03567 0.96168 1.21158 0.92531 1.01660 0.96382 0.89400 1.22054 1.01140 0.93977 1.04293 1.20392 0.89844 0.76082 0.82212 1.90579 1.68438 1.50934 1.34996 1.47848 1.08126 1.62887 1.12971 1.19836 0.91692 0.97627 0.82327 1.21321 1.34980 0.99030 1.02019 0.90199 1.24851 0.95703 0.95837 0.96161 1.69891 1.42851 1.28283 1.11585 0.86993 0.80955 0.84213 0.78547 1.19754 1.20906 1.18889 1.21397 0.81939 0.94446 1.02424 1.21514 0.96269 0.97818 0.97672 1.21748 0.95535 1.00919 1.01741 1.21741 1.01187 1.00167 0.96241 1.21098 0.93946 0.97877 0.99575 1.20999 0.94224 0.97340 1.01265 0.91546 0.91713 0.91788 0.86466 0.86249 0.91238 0.90205 0.87512 0.93343 0.92544 0.95109 0.95061 0.92364 0.90550 0.90422 0.91276 0.92730 0.92981 0.92568 0.93208 0.93743 0.92400 0.85916 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.10 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 4 C -0.11 -1.53 9.70 -39.58 -0.38 -1.91 16 5 C -0.07 -1.06 4.70 -104.62 -0.49 -1.55 16 6 C -0.06 -0.97 4.26 -27.88 -0.12 -1.09 16 7 C -0.10 -1.71 1.92 -91.77 -0.18 -1.89 16 8 H 0.09 1.57 6.36 -51.93 -0.33 1.24 16 9 C -0.16 -2.95 8.64 37.16 0.32 -2.63 16 10 C 0.53 10.49 5.47 -10.99 -0.06 10.43 16 11 O -0.57 -12.22 15.15 5.56 0.08 -12.14 16 12 N -0.59 -11.83 2.29 -175.06 -0.40 -12.23 16 13 C 0.21 4.48 3.93 -5.19 -0.02 4.46 16 14 C -0.54 -13.68 7.49 -34.44 -0.26 -13.93 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 18 Si 0.87 19.66 27.47 -169.99 -4.67 15.00 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 22 C 0.12 2.19 4.97 -4.04 -0.02 2.17 16 23 C -0.11 -1.72 3.11 -90.62 -0.28 -2.00 16 24 C -0.14 -1.78 9.19 37.16 0.34 -1.43 16 25 C -0.14 -2.03 8.27 37.16 0.31 -1.72 16 26 C -0.11 -1.46 8.03 -39.58 -0.32 -1.77 16 27 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 34 H 0.08 1.28 7.98 -51.93 -0.41 0.86 16 35 H 0.11 2.37 5.14 -51.93 -0.27 2.11 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.98 6.39 -51.93 -0.33 0.64 16 38 H 0.03 0.67 7.08 -51.93 -0.37 0.30 16 39 H 0.03 0.67 5.23 -51.93 -0.27 0.40 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 42 H 0.08 1.45 7.19 -51.92 -0.37 1.07 16 43 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.81 7.05 -51.93 -0.37 0.44 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.12 1.58 8.05 -52.48 -0.42 1.15 16 51 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -28.74 398.52 -9.55 -38.29 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -9.06 Total: 6.70 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.28 Total: -17.06 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.37 Total: -36.80 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.74 -9.55 -38.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778661849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.721 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds