Wall clock time and date at job start Tue Mar 31 2020 11:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00155 * 2 1 4 4 C 1.38231 * 120.00127 * 179.97438 * 3 2 1 5 5 C 1.38238 * 120.00430 * 359.95862 * 4 3 2 6 6 C 1.50699 * 120.00403 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46709 * 90.00154 * 6 5 4 8 8 H 1.08999 * 109.47363 * 304.99650 * 7 6 5 9 9 C 1.53000 * 109.47196 * 65.00075 * 7 6 5 10 10 C 1.50706 * 109.46736 * 184.99945 * 7 6 5 11 11 O 1.21283 * 119.99778 * 336.91910 * 10 7 6 12 12 N 1.34770 * 119.99874 * 156.92008 * 10 7 6 13 13 C 1.46507 * 120.00355 * 6.43204 * 12 10 7 14 14 C 1.50694 * 109.46596 * 91.30218 * 13 12 10 15 15 H 1.08001 * 120.00863 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99671 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00005 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00216 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47174 * 89.99877 * 18 16 14 20 20 H 1.48499 * 109.47536 * 210.00041 * 18 16 14 21 21 H 1.48502 * 109.47127 * 330.00271 * 18 16 14 22 22 C 1.46498 * 120.00104 * 186.43817 * 12 10 7 23 23 C 1.53002 * 109.47499 * 95.60362 * 22 12 10 24 24 C 1.52996 * 109.47278 * 173.61358 * 23 22 12 25 25 C 1.53003 * 109.46995 * 293.61004 * 23 22 12 26 26 C 1.38237 * 119.99492 * 0.27401 * 5 4 3 27 27 C 1.38236 * 120.00055 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46785 * 89.99868 * 1 2 3 29 29 H 1.09006 * 109.46678 * 210.00071 * 1 2 3 30 30 H 1.08998 * 109.46585 * 329.99433 * 1 2 3 31 31 H 1.08002 * 119.99682 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00175 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.46809 * 330.00025 * 6 5 4 34 34 H 1.08997 * 109.47077 * 209.99856 * 6 5 4 35 35 H 1.09006 * 109.47167 * 178.31615 * 9 7 6 36 36 H 1.09005 * 109.47171 * 58.32162 * 9 7 6 37 37 H 1.08994 * 109.47047 * 298.32015 * 9 7 6 38 38 H 1.08995 * 109.47004 * 211.30538 * 13 12 10 39 39 H 1.08998 * 109.46300 * 331.30926 * 13 12 10 40 40 H 0.97001 * 120.00039 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47552 * 215.60697 * 22 12 10 42 42 H 1.09008 * 109.46859 * 335.60047 * 22 12 10 43 43 H 1.08999 * 109.46844 * 53.61007 * 23 22 12 44 44 H 1.09005 * 109.47525 * 59.99610 * 24 23 22 45 45 H 1.09000 * 109.47281 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47262 * 299.99944 * 24 23 22 47 47 H 1.08998 * 109.46642 * 65.63765 * 25 23 22 48 48 H 1.08999 * 109.46991 * 185.63942 * 25 23 22 49 49 H 1.08998 * 109.47209 * 305.63885 * 25 23 22 50 50 H 1.08003 * 120.00026 * 179.72438 * 26 5 4 51 51 H 1.07997 * 120.00580 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2718 0.0000 0.0019 6 6 5.7788 0.0000 0.0019 7 6 6.2887 0.0017 1.4445 8 1 5.8541 0.8441 1.9825 9 6 5.8839 -1.3049 2.1300 10 6 7.7906 0.1255 1.4461 11 8 8.4276 -0.2080 0.4694 12 7 8.4259 0.6067 2.5330 13 6 7.6742 0.8768 3.7612 14 6 7.6909 -0.3476 4.6396 15 1 8.2098 -1.2377 4.3158 16 6 7.0436 -0.3314 5.8569 17 7 7.0585 -1.3998 6.6238 18 14 6.1455 1.2078 6.4169 19 1 4.7370 1.1569 5.9490 20 1 6.1720 1.2846 7.8996 21 1 6.8133 2.4055 5.8471 22 6 9.8680 0.8599 2.4863 23 6 10.1169 2.3330 2.1561 24 6 11.6131 2.6341 2.2635 25 6 9.6390 2.6243 0.7321 26 6 3.5806 -1.1971 -0.0029 27 6 2.1982 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8899 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1206 2.1325 0.0001 33 1 6.1420 0.8894 -0.5129 34 1 6.1421 -0.8906 -0.5108 35 1 6.2728 -1.3166 3.1483 36 1 6.2938 -2.1487 1.5748 37 1 4.7969 -1.3803 2.1553 38 1 8.1329 1.7110 4.2918 39 1 6.6443 1.1288 3.5087 40 1 6.6028 -1.3885 7.4801 41 1 10.3098 0.6250 3.4546 42 1 10.3222 0.2337 1.7183 43 1 9.5686 2.9605 2.8588 44 1 12.1614 2.0066 1.5608 45 1 11.7903 3.6837 2.0287 46 1 11.9536 2.4266 3.2779 47 1 8.5567 2.5063 0.6809 48 1 9.9065 3.6455 0.4609 49 1 10.1135 1.9285 0.0402 50 1 4.1206 -2.1325 -0.0063 51 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778661849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:11 Heat of formation + Delta-G solvation = -55.382721 kcal Electronic energy + Delta-G solvation = -27634.298278 eV Core-core repulsion = 24110.810077 eV Total energy + Delta-G solvation = -3523.488201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31347 -40.22445 -37.64182 -36.33680 -35.55224 -34.23532 -32.93310 -31.78433 -30.00082 -29.16807 -28.05186 -27.45625 -26.19911 -24.54967 -23.69929 -23.29799 -21.56030 -20.90912 -19.64181 -18.97983 -18.27315 -17.20520 -16.72565 -16.59118 -16.30631 -15.99216 -15.73628 -15.56185 -15.13664 -14.92776 -14.62062 -14.45907 -14.36114 -14.21916 -13.83438 -13.67645 -13.50583 -13.40811 -13.24492 -13.05316 -12.92275 -12.77958 -12.72094 -12.62472 -12.50897 -12.31176 -12.02672 -11.97639 -11.89216 -11.84253 -11.78146 -11.72132 -11.57594 -11.51766 -10.76332 -10.51050 -9.76530 -9.36440 -9.31233 -8.28231 -6.32523 0.44878 0.54707 1.38971 1.40414 1.48857 1.77077 2.30433 2.34527 2.87976 3.05398 3.59157 3.86151 3.92289 4.02240 4.04433 4.07918 4.14902 4.19388 4.20209 4.24912 4.38293 4.49194 4.63587 4.65663 4.67033 4.74648 4.78776 4.80673 4.84321 4.86484 4.88410 4.92983 4.95285 4.96710 5.02107 5.03621 5.06423 5.18977 5.20251 5.26085 5.34358 5.39732 5.45319 5.45985 5.55031 5.56769 5.74516 5.76181 5.79731 6.18159 6.21683 6.64252 6.72621 7.26359 7.38746 8.87687 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.004628 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.579694 B = 6048.167247 C = 7745.382157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.092 4.092 6 C -0.050 4.050 7 C -0.091 4.091 8 H 0.092 0.908 9 C -0.146 4.146 10 C 0.521 3.479 11 O -0.587 6.587 12 N -0.594 5.594 13 C 0.217 3.783 14 C -0.527 4.527 15 H 0.031 0.969 16 C 0.024 3.976 17 N -0.940 5.940 18 Si 0.930 3.070 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.239 1.239 22 C 0.117 3.883 23 C -0.107 4.107 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.129 4.129 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.267 0.733 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.045 0.955 50 H 0.121 0.879 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 9.031 -12.149 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.088 4.088 7 C -0.112 4.112 8 H 0.110 0.890 9 C -0.203 4.203 10 C 0.311 3.689 11 O -0.469 6.469 12 N -0.323 5.323 13 C 0.095 3.905 14 C -0.565 4.565 15 H 0.050 0.950 16 C -0.175 4.175 17 N -0.579 5.579 18 Si 0.753 3.247 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.162 1.162 22 C -0.006 4.006 23 C -0.126 4.126 24 C -0.194 4.194 25 C -0.187 4.187 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.064 0.936 50 H 0.139 0.861 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.540 8.797 -12.463 17.017 hybrid contribution -0.059 -0.198 0.889 0.912 sum -7.599 8.599 -11.575 16.299 Atomic orbital electron populations 1.20813 0.89392 1.03463 1.03046 1.20273 0.97522 0.92985 0.99321 1.21278 0.93843 0.98524 1.00766 1.21242 0.94854 0.97659 1.00334 1.19846 0.94813 0.93981 1.00592 1.20295 0.91082 1.03199 0.94175 1.21144 0.90984 1.00960 0.98100 0.88971 1.21879 1.01815 0.94652 1.01976 1.20791 0.90781 0.75470 0.81860 1.90561 1.69084 1.51609 1.35605 1.47920 1.08943 1.62924 1.12505 1.19643 0.92718 0.95870 0.82302 1.21372 1.33747 0.98804 1.02619 0.95028 1.25667 0.96605 0.99044 0.96155 1.70045 1.44637 1.30944 1.12286 0.85971 0.80032 0.80832 0.77875 1.18835 1.21149 1.16218 1.21536 0.80769 0.96724 1.01550 1.21461 0.98255 0.95123 0.97766 1.21717 0.93323 1.02308 1.02083 1.21674 0.99896 1.01394 0.95702 1.21214 0.94804 0.97712 1.00143 1.21271 0.93829 0.98617 1.01003 0.90176 0.91040 0.90761 0.84168 0.85218 0.90876 0.91277 0.91098 0.93697 0.91099 0.94012 0.93765 0.92368 0.91509 0.91558 0.91275 0.92505 0.90845 0.92325 0.94859 0.91144 0.93603 0.86091 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.10 -2.15 5.88 -19.87 -0.12 -2.27 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 4 C -0.12 -3.05 9.70 22.27 0.22 -2.84 16 5 C -0.09 -2.57 4.70 -19.86 -0.09 -2.66 16 6 C -0.05 -1.54 4.26 29.85 0.13 -1.41 16 7 C -0.09 -3.25 1.92 -11.54 -0.02 -3.27 16 8 H 0.09 3.21 6.36 -2.39 -0.02 3.19 16 9 C -0.15 -5.61 8.64 71.98 0.62 -4.99 16 10 C 0.52 21.11 5.47 87.66 0.48 21.59 16 11 O -0.59 -25.71 15.15 -3.04 -0.05 -25.75 16 12 N -0.59 -24.09 2.29 -826.15 -1.89 -25.98 16 13 C 0.22 9.31 3.93 85.63 0.34 9.65 16 14 C -0.53 -27.68 7.49 25.60 0.19 -27.49 16 15 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 16 C 0.02 1.31 5.47 84.65 0.46 1.77 16 17 N -0.94 -55.28 13.96 21.45 0.30 -54.98 16 18 Si 0.93 39.81 27.47 68.60 1.88 41.69 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 22 C 0.12 4.27 4.97 86.38 0.43 4.70 16 23 C -0.11 -3.08 3.11 -10.79 -0.03 -3.12 16 24 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 25 C -0.13 -3.67 8.27 71.98 0.60 -3.07 16 26 C -0.12 -3.21 8.03 22.27 0.18 -3.03 16 27 C -0.13 -3.00 9.70 22.27 0.22 -2.78 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 30 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.07 2.25 7.98 -2.39 -0.02 2.23 16 35 H 0.07 3.27 5.14 -2.38 -0.01 3.26 16 36 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 2.48 6.39 -2.39 -0.02 2.46 16 38 H 0.04 1.73 7.08 -2.39 -0.02 1.71 16 39 H 0.04 1.82 5.23 -2.39 -0.01 1.80 16 40 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 42 H 0.07 2.54 7.19 -2.38 -0.02 2.53 16 43 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 44 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.03 1.03 7.05 -2.39 -0.02 1.02 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.12 3.13 8.05 -2.91 -0.02 3.11 16 51 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -63.75 398.52 6.24 -57.50 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.82 Total: 32.68 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 5.18 Total: -25.16 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.59 Total: -80.97 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.69 kcal Total: -63.75 6.24 -57.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778661849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.122 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds