Wall clock time and date at job start Tue Mar 31 2020 12:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47146 * 2 1 4 4 C 1.52999 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46948 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47187 * 299.99904 * 6 5 4 8 8 C 1.53004 * 109.47129 * 60.00209 * 6 5 4 9 9 C 1.52995 * 109.47266 * 60.00169 * 8 6 5 10 10 C 1.50704 * 109.46949 * 179.97438 * 6 5 4 11 11 O 1.21274 * 120.00262 * 0.02562 * 10 6 5 12 12 N 1.34783 * 119.99717 * 179.97438 * 10 6 5 13 13 C 1.39240 * 119.99920 * 176.70366 * 12 10 6 14 14 C 1.39478 * 119.83579 * 217.48761 * 13 12 10 15 15 C 1.36366 * 120.17174 * 179.75841 * 14 13 12 16 16 C 1.40872 * 119.82914 * 0.51055 * 15 14 13 17 17 C 1.41150 * 120.16831 * 179.72054 * 16 15 14 18 18 H 1.07993 * 120.00713 * 157.96735 * 17 16 15 19 19 C 1.39911 * 119.99501 * 337.96350 * 17 16 15 20 20 N 1.30869 * 120.00709 * 327.61962 * 19 17 16 21 21 Si 1.86807 * 119.99484 * 147.61727 * 19 17 16 22 22 H 1.48502 * 109.46987 * 94.99041 * 21 19 17 23 23 H 1.48502 * 109.46689 * 214.98633 * 21 19 17 24 24 H 1.48494 * 109.47404 * 334.98615 * 21 19 17 25 25 C 1.40869 * 119.66827 * 359.74476 * 16 15 14 26 26 C 1.36371 * 119.83082 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46787 * 59.99960 * 1 2 3 28 28 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47381 * 300.00364 * 1 2 3 30 30 H 1.08994 * 109.47052 * 240.00227 * 2 1 3 31 31 H 1.08995 * 109.47238 * 119.99588 * 2 1 3 32 32 H 1.09001 * 109.47277 * 59.99573 * 3 2 1 33 33 H 1.09005 * 109.46824 * 299.99900 * 3 2 1 34 34 H 1.09004 * 109.47215 * 60.00148 * 4 3 2 35 35 H 1.08995 * 109.47238 * 299.99588 * 4 3 2 36 36 H 1.09003 * 109.47496 * 299.99713 * 5 4 3 37 37 H 1.09001 * 109.47289 * 59.99686 * 5 4 3 38 38 H 1.08999 * 109.46988 * 59.99869 * 7 6 5 39 39 H 1.09008 * 109.47131 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47329 * 300.00281 * 7 6 5 41 41 H 1.09002 * 109.46688 * 179.97438 * 8 6 5 42 42 H 1.08999 * 109.46831 * 299.99999 * 8 6 5 43 43 H 1.09008 * 109.46853 * 299.99896 * 9 8 6 44 44 H 1.09002 * 109.47253 * 59.99611 * 9 8 6 45 45 H 1.08997 * 109.47472 * 180.02562 * 9 8 6 46 46 H 0.96996 * 120.00210 * 356.70497 * 12 10 6 47 47 H 1.08003 * 119.90722 * 0.02562 * 14 13 12 48 48 H 1.08005 * 120.08677 * 180.24755 * 15 14 13 49 49 H 0.96990 * 120.00416 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.08274 * 179.97438 * 25 16 15 51 51 H 1.08006 * 119.91773 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1210 2.1640 1.2463 8 6 6.1189 2.1636 -1.2522 9 6 5.6079 2.8847 -2.5011 10 6 6.1122 4.3059 -0.0039 11 8 5.3242 5.2277 -0.0033 12 7 7.4374 4.5522 -0.0046 13 6 7.9019 5.8629 -0.0751 14 6 9.0458 6.1548 -0.8179 15 6 9.5039 7.4368 -0.8956 16 6 8.8248 8.4661 -0.2145 17 6 9.2961 9.7947 -0.2853 18 1 8.6253 10.6171 -0.0854 19 6 10.6325 10.0462 -0.6143 20 7 11.5652 9.2015 -0.2548 21 14 11.0855 11.5879 -1.5670 22 1 11.4878 12.6563 -0.6173 23 1 12.2152 11.2893 -2.4835 24 1 9.9139 12.0435 -2.3575 25 6 7.6732 8.1627 0.5380 26 6 7.2238 6.8767 0.6017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 3.7163 3.3987 -0.8913 37 1 3.7169 3.3992 0.8887 38 1 5.7576 1.1364 1.2468 39 1 7.2111 2.1644 1.2456 40 1 5.7584 2.6780 2.1366 41 1 7.2089 2.1641 -1.2533 42 1 5.7555 1.1360 -1.2517 43 1 4.5178 2.8847 -2.5001 44 1 5.9712 3.9124 -2.5015 45 1 5.9701 2.3706 -3.3913 46 1 8.0675 3.8163 0.0440 47 1 9.5675 5.3639 -1.3363 48 1 10.3875 7.6619 -1.4745 49 1 12.4916 9.3757 -0.4832 50 1 7.1477 8.9465 1.0632 51 1 6.3413 6.6425 1.1786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780209060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:13 Heat of formation + Delta-G solvation = -60.087501 kcal Electronic energy + Delta-G solvation = -26648.564783 eV Core-core repulsion = 23124.872568 eV Total energy + Delta-G solvation = -3523.692215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31463 -37.89699 -36.69665 -35.19802 -34.42027 -32.97836 -31.40259 -30.27481 -29.51845 -28.85836 -26.51620 -25.29367 -23.94811 -23.11953 -21.93587 -21.30466 -20.84390 -20.10015 -18.40240 -17.33906 -16.81137 -16.11278 -15.93552 -15.27483 -15.14937 -14.90451 -14.43507 -13.97872 -13.83245 -13.60227 -13.46796 -13.14340 -13.05055 -12.87628 -12.58901 -12.37969 -12.07616 -12.02377 -11.96768 -11.91163 -11.77081 -11.40853 -11.38514 -11.19459 -11.14675 -11.00009 -10.91414 -10.77375 -10.71715 -10.54200 -10.38565 -10.31708 -10.09506 -9.69796 -9.31265 -8.93136 -8.63334 -7.52670 -7.12098 -6.86270 -4.25299 2.62632 2.99528 3.05627 3.12065 3.14153 3.41323 3.79940 3.90162 4.49705 4.51651 4.69918 4.74347 4.77155 4.87536 4.93767 5.11554 5.24732 5.27468 5.34155 5.44615 5.52395 5.54129 5.58802 5.61232 5.69029 5.70731 5.77907 5.80877 5.87206 5.90350 5.93907 6.03052 6.07897 6.10566 6.15947 6.21200 6.27513 6.32520 6.45637 6.50090 6.81105 6.99339 7.02214 7.17948 7.32173 7.59016 7.73903 7.93291 8.04311 8.27761 8.35820 8.57186 8.84593 8.85953 9.04606 10.03557 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.002326 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.156373 B =12036.837846 C =12238.277460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.078 4.078 7 C -0.143 4.143 8 C -0.110 4.110 9 C -0.158 4.158 10 C 0.511 3.489 11 O -0.534 6.534 12 N -0.649 5.649 13 C -0.018 4.018 14 C -0.103 4.103 15 C -0.171 4.171 16 C 0.112 3.888 17 C -0.466 4.466 18 H 0.081 0.919 19 C 0.088 3.912 20 N -0.770 5.770 21 Si 0.895 3.105 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.224 4.224 26 C -0.066 4.066 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.392 0.608 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.283 0.717 50 H 0.094 0.906 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 -17.543 -0.780 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.133 4.133 6 C -0.081 4.081 7 C -0.200 4.200 8 C -0.148 4.148 9 C -0.215 4.215 10 C 0.297 3.703 11 O -0.411 6.411 12 N -0.291 5.291 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.191 4.191 16 C 0.109 3.891 17 C -0.494 4.494 18 H 0.099 0.901 19 C -0.133 4.133 20 N -0.393 5.393 21 Si 0.718 3.282 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.244 4.244 26 C -0.086 4.086 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.225 0.775 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.656 -16.939 -0.769 20.027 hybrid contribution 0.795 0.336 -0.390 0.947 sum -9.861 -16.603 -1.159 19.345 Atomic orbital electron populations 1.21784 0.96111 1.01347 1.01844 1.21536 0.95682 0.97193 1.01792 1.21623 0.95629 0.96377 1.02208 1.21747 0.95120 0.97006 1.02084 1.21428 0.92054 0.96280 1.03519 1.20848 0.97417 0.92970 0.96899 1.21913 1.01113 1.00515 0.96480 1.21602 1.00588 0.99291 0.93296 1.21861 1.01577 1.01149 0.96911 1.20376 0.82570 0.90524 0.76796 1.90666 1.55213 1.45902 1.49327 1.42964 1.06415 1.07546 1.72219 1.17067 1.01016 0.83159 1.09773 1.20165 0.96508 0.96578 0.99084 1.20608 1.02320 0.91827 1.04304 1.17588 0.90361 0.93000 0.88127 1.19495 0.94660 0.93296 1.41956 0.90059 1.25934 0.96219 0.97972 0.93202 1.69944 1.01883 1.36101 1.31387 0.86524 0.79139 0.81930 0.80561 1.19476 1.19906 1.18107 1.20599 1.02181 0.95018 1.06595 1.20297 0.98041 0.92777 0.97499 0.92783 0.93007 0.92791 0.92193 0.92200 0.92025 0.92036 0.91740 0.91810 0.90915 0.91422 0.91390 0.92278 0.92065 0.91744 0.90898 0.92202 0.92200 0.92764 0.77495 0.89400 0.87555 0.90643 0.88829 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 4 C -0.12 -1.08 4.51 -26.73 -0.12 -1.20 16 5 C -0.10 -1.13 3.21 -26.73 -0.09 -1.21 16 6 C -0.08 -0.96 0.43 -155.66 -0.07 -1.02 16 7 C -0.14 -1.47 8.02 37.16 0.30 -1.17 16 8 C -0.11 -1.16 4.54 -26.73 -0.12 -1.28 16 9 C -0.16 -1.88 9.31 37.15 0.35 -1.53 16 10 C 0.51 8.87 5.02 -10.98 -0.06 8.81 16 11 O -0.53 -11.52 13.60 5.56 0.08 -11.45 16 12 N -0.65 -11.61 5.08 -9.74 -0.05 -11.66 16 13 C -0.02 -0.41 6.25 -83.57 -0.52 -0.93 16 14 C -0.10 -2.39 9.90 -39.79 -0.39 -2.78 16 15 C -0.17 -4.41 8.74 -39.26 -0.34 -4.75 16 16 C 0.11 3.03 5.57 -106.80 -0.60 2.44 16 17 C -0.47 -12.46 8.94 -37.85 -0.34 -12.79 16 18 H 0.08 2.11 8.01 -52.49 -0.42 1.69 16 19 C 0.09 2.20 4.77 -17.34 -0.08 2.12 16 20 N -0.77 -19.56 11.78 55.55 0.65 -18.91 16 21 Si 0.90 18.36 29.66 -169.99 -5.04 13.31 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.22 -5.80 9.74 -39.26 -0.38 -6.19 16 26 C -0.07 -1.63 8.59 -39.79 -0.34 -1.97 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 35 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 36 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 39 H 0.06 0.57 7.49 -51.92 -0.39 0.18 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.66 7.64 -51.93 -0.40 0.26 16 42 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 43 H 0.06 0.69 6.43 -51.92 -0.33 0.35 16 44 H 0.06 0.90 7.22 -51.93 -0.37 0.53 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.39 5.75 7.67 -40.82 -0.31 5.44 16 47 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 48 H 0.11 2.78 6.52 -52.48 -0.34 2.44 16 49 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 50 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 51 H 0.10 2.46 6.45 -52.48 -0.34 2.12 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -29.41 395.36 -9.92 -39.33 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.78 Total: 9.78 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.74 Total: -26.37 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.60 Total: -30.57 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.41 -9.92 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780209060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.756 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds