Wall clock time and date at job start Tue Mar 31 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47146 * 2 1 4 4 C 1.52999 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46948 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47187 * 299.99904 * 6 5 4 8 8 C 1.53004 * 109.47129 * 60.00209 * 6 5 4 9 9 C 1.52995 * 109.47266 * 60.00169 * 8 6 5 10 10 C 1.50704 * 109.46949 * 179.97438 * 6 5 4 11 11 O 1.21274 * 120.00262 * 0.02562 * 10 6 5 12 12 N 1.34783 * 119.99717 * 179.97438 * 10 6 5 13 13 C 1.39240 * 119.99920 * 176.70366 * 12 10 6 14 14 C 1.39478 * 119.83579 * 217.48761 * 13 12 10 15 15 C 1.36366 * 120.17174 * 179.75841 * 14 13 12 16 16 C 1.40872 * 119.82914 * 0.51055 * 15 14 13 17 17 C 1.41150 * 120.16831 * 179.72054 * 16 15 14 18 18 H 1.07993 * 120.00713 * 157.96735 * 17 16 15 19 19 C 1.39911 * 119.99501 * 337.96350 * 17 16 15 20 20 N 1.30869 * 120.00709 * 327.61962 * 19 17 16 21 21 Si 1.86807 * 119.99484 * 147.61727 * 19 17 16 22 22 H 1.48502 * 109.46987 * 94.99041 * 21 19 17 23 23 H 1.48502 * 109.46689 * 214.98633 * 21 19 17 24 24 H 1.48494 * 109.47404 * 334.98615 * 21 19 17 25 25 C 1.40869 * 119.66827 * 359.74476 * 16 15 14 26 26 C 1.36371 * 119.83082 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46787 * 59.99960 * 1 2 3 28 28 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47381 * 300.00364 * 1 2 3 30 30 H 1.08994 * 109.47052 * 240.00227 * 2 1 3 31 31 H 1.08995 * 109.47238 * 119.99588 * 2 1 3 32 32 H 1.09001 * 109.47277 * 59.99573 * 3 2 1 33 33 H 1.09005 * 109.46824 * 299.99900 * 3 2 1 34 34 H 1.09004 * 109.47215 * 60.00148 * 4 3 2 35 35 H 1.08995 * 109.47238 * 299.99588 * 4 3 2 36 36 H 1.09003 * 109.47496 * 299.99713 * 5 4 3 37 37 H 1.09001 * 109.47289 * 59.99686 * 5 4 3 38 38 H 1.08999 * 109.46988 * 59.99869 * 7 6 5 39 39 H 1.09008 * 109.47131 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47329 * 300.00281 * 7 6 5 41 41 H 1.09002 * 109.46688 * 179.97438 * 8 6 5 42 42 H 1.08999 * 109.46831 * 299.99999 * 8 6 5 43 43 H 1.09008 * 109.46853 * 299.99896 * 9 8 6 44 44 H 1.09002 * 109.47253 * 59.99611 * 9 8 6 45 45 H 1.08997 * 109.47472 * 180.02562 * 9 8 6 46 46 H 0.96996 * 120.00210 * 356.70497 * 12 10 6 47 47 H 1.08003 * 119.90722 * 0.02562 * 14 13 12 48 48 H 1.08005 * 120.08677 * 180.24755 * 15 14 13 49 49 H 0.96990 * 120.00416 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.08274 * 179.97438 * 25 16 15 51 51 H 1.08006 * 119.91773 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0026 7 6 6.1210 2.1640 1.2463 8 6 6.1189 2.1636 -1.2522 9 6 5.6079 2.8847 -2.5011 10 6 6.1122 4.3059 -0.0039 11 8 5.3242 5.2277 -0.0033 12 7 7.4374 4.5522 -0.0046 13 6 7.9019 5.8629 -0.0751 14 6 9.0458 6.1548 -0.8179 15 6 9.5039 7.4368 -0.8956 16 6 8.8248 8.4661 -0.2145 17 6 9.2961 9.7947 -0.2853 18 1 8.6253 10.6171 -0.0854 19 6 10.6325 10.0462 -0.6143 20 7 11.5652 9.2015 -0.2548 21 14 11.0855 11.5879 -1.5670 22 1 11.4878 12.6563 -0.6173 23 1 12.2152 11.2893 -2.4835 24 1 9.9139 12.0435 -2.3575 25 6 7.6732 8.1627 0.5380 26 6 7.2238 6.8767 0.6017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 3.7163 3.3987 -0.8913 37 1 3.7169 3.3992 0.8887 38 1 5.7576 1.1364 1.2468 39 1 7.2111 2.1644 1.2456 40 1 5.7584 2.6780 2.1366 41 1 7.2089 2.1641 -1.2533 42 1 5.7555 1.1360 -1.2517 43 1 4.5178 2.8847 -2.5001 44 1 5.9712 3.9124 -2.5015 45 1 5.9701 2.3706 -3.3913 46 1 8.0675 3.8163 0.0440 47 1 9.5675 5.3639 -1.3363 48 1 10.3875 7.6619 -1.4745 49 1 12.4916 9.3757 -0.4832 50 1 7.1477 8.9465 1.0632 51 1 6.3413 6.6425 1.1786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780209060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:12 Heat of formation + Delta-G solvation = -73.960672 kcal Electronic energy + Delta-G solvation = -26649.166369 eV Core-core repulsion = 23124.872568 eV Total energy + Delta-G solvation = -3524.293801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67891 -39.50633 -38.00458 -36.18358 -36.00401 -34.72996 -32.21514 -31.52693 -31.27086 -30.52760 -27.31796 -27.00358 -25.08053 -24.07540 -23.44481 -22.73164 -21.97398 -21.52599 -19.71672 -19.26054 -18.25793 -17.45383 -17.02033 -16.82347 -16.37903 -16.05801 -15.74425 -15.43536 -15.00933 -14.85628 -14.53751 -14.31963 -14.15721 -13.97940 -13.92221 -13.87869 -13.66306 -13.35341 -13.24381 -12.89861 -12.84963 -12.70639 -12.68993 -12.51457 -12.34615 -12.18249 -11.94688 -11.89033 -11.76358 -11.59105 -11.54831 -11.47240 -11.23499 -11.13885 -11.09244 -10.59917 -10.34586 -9.49765 -9.01550 -8.73381 -6.24525 0.82506 1.11349 1.36172 1.42284 1.54064 1.86804 2.18803 2.40685 2.63683 3.64176 3.65041 3.71646 3.88399 4.01011 4.13121 4.23286 4.31702 4.37342 4.38481 4.47308 4.49022 4.57873 4.68269 4.72746 4.79320 4.81685 4.87882 4.90965 4.95080 5.04019 5.05532 5.10108 5.13124 5.14402 5.17400 5.20321 5.25756 5.27414 5.30148 5.34622 5.37660 5.45472 5.49833 5.55483 5.62318 5.63604 5.87384 6.01663 6.09585 6.34481 6.60039 6.78882 6.87501 6.98049 7.48194 8.19410 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.002326 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.156373 B =12036.837846 C =12238.277460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.068 4.068 7 C -0.142 4.142 8 C -0.107 4.107 9 C -0.157 4.157 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.643 5.643 13 C -0.004 4.004 14 C -0.101 4.101 15 C -0.188 4.188 16 C 0.083 3.917 17 C -0.506 4.506 18 H 0.073 0.927 19 C 0.052 3.948 20 N -0.798 5.798 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.263 1.263 25 C -0.246 4.246 26 C -0.078 4.078 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.411 0.589 47 H 0.122 0.878 48 H 0.099 0.901 49 H 0.295 0.705 50 H 0.089 0.911 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 -20.501 -1.556 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.149 4.149 5 C -0.130 4.130 6 C -0.071 4.071 7 C -0.199 4.199 8 C -0.144 4.144 9 C -0.215 4.215 10 C 0.297 3.703 11 O -0.461 6.461 12 N -0.287 5.287 13 C -0.097 4.097 14 C -0.121 4.121 15 C -0.208 4.208 16 C 0.080 3.920 17 C -0.534 4.534 18 H 0.092 0.908 19 C -0.168 4.168 20 N -0.421 5.421 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.183 1.183 24 H -0.187 1.187 25 C -0.266 4.266 26 C -0.098 4.098 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.092 0.908 46 H 0.248 0.752 47 H 0.140 0.860 48 H 0.117 0.883 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.979 -19.946 -1.531 22.355 hybrid contribution 0.489 1.173 -0.112 1.275 sum -9.490 -18.773 -1.642 21.100 Atomic orbital electron populations 1.21801 0.96056 1.01870 1.01564 1.21510 0.95765 0.96095 1.02473 1.21616 0.95576 0.97307 1.01424 1.21695 0.95141 0.94620 1.03463 1.21394 0.91886 0.98221 1.01512 1.20878 0.97452 0.89448 0.99322 1.21960 1.01820 1.01718 0.94407 1.21671 1.01277 1.00397 0.91059 1.21856 1.01638 0.99175 0.98789 1.21449 0.81675 0.92519 0.74649 1.90649 1.56283 1.48090 1.51040 1.42917 1.07357 1.06228 1.72233 1.17139 1.00029 0.84897 1.07676 1.20438 0.96508 0.96533 0.98622 1.20640 1.02453 0.92832 1.04840 1.17900 0.91131 0.93938 0.89025 1.19689 0.95926 0.93134 1.44606 0.90845 1.26726 0.95320 1.01466 0.93245 1.69933 1.02652 1.37904 1.31619 0.85372 0.78789 0.77658 0.79020 1.18353 1.18333 1.18675 1.20716 1.02722 0.95763 1.07419 1.20387 0.98246 0.93021 0.98150 0.93101 0.92074 0.93122 0.91449 0.91484 0.92928 0.92898 0.90221 0.90281 0.92980 0.93593 0.88167 0.91238 0.93346 0.90685 0.87434 0.92212 0.96166 0.90823 0.75169 0.85973 0.88312 0.89437 0.89229 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.46 5.93 30.60 0.18 -1.28 16 3 C -0.12 -1.87 5.21 30.60 0.16 -1.71 16 4 C -0.11 -1.66 4.51 30.59 0.14 -1.53 16 5 C -0.09 -2.10 3.21 30.59 0.10 -2.00 16 6 C -0.07 -1.53 0.43 -52.93 -0.02 -1.55 16 7 C -0.14 -2.45 8.02 71.98 0.58 -1.87 16 8 C -0.11 -1.88 4.54 30.59 0.14 -1.74 16 9 C -0.16 -3.47 9.31 71.98 0.67 -2.80 16 10 C 0.51 17.50 5.02 87.66 0.44 17.94 16 11 O -0.58 -25.91 13.60 -3.01 -0.04 -25.95 16 12 N -0.64 -22.39 5.08 -303.10 -1.54 -23.92 16 13 C 0.00 -0.19 6.25 38.56 0.24 0.05 16 14 C -0.10 -4.65 9.90 22.13 0.22 -4.43 16 15 C -0.19 -9.92 8.74 22.48 0.20 -9.73 16 16 C 0.08 4.68 5.57 -21.28 -0.12 4.56 16 17 C -0.51 -28.20 8.94 23.39 0.21 -27.99 16 18 H 0.07 4.03 8.01 -2.91 -0.02 4.01 16 19 C 0.05 2.63 4.77 85.24 0.41 3.03 16 20 N -0.80 -40.95 11.78 21.82 0.26 -40.70 16 21 Si 0.97 37.92 29.66 68.60 2.03 39.96 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 C -0.25 -13.48 9.74 22.48 0.22 -13.26 16 26 C -0.08 -3.98 8.59 22.13 0.19 -3.79 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.08 0.98 6.43 -2.39 -0.02 0.96 16 35 H 0.08 0.97 6.43 -2.39 -0.02 0.96 16 36 H 0.05 1.39 6.38 -2.39 -0.02 1.38 16 37 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.10 1.13 6.43 -2.39 -0.02 1.12 16 39 H 0.07 1.08 7.49 -2.38 -0.02 1.06 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.21 7.64 -2.39 -0.02 1.19 16 42 H 0.11 1.25 6.43 -2.39 -0.02 1.24 16 43 H 0.06 1.30 6.43 -2.38 -0.02 1.28 16 44 H 0.02 0.59 7.22 -2.39 -0.02 0.57 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.41 11.07 7.67 -92.71 -0.71 10.36 16 47 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 48 H 0.10 5.28 6.52 -2.91 -0.02 5.26 16 49 H 0.29 13.38 8.30 -92.72 -0.77 12.61 16 50 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 51 H 0.10 4.97 6.45 -2.91 -0.02 4.95 16 Total: -1.00 -67.91 395.36 5.56 -62.34 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.19 Total: 37.51 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 4.66 Total: -49.24 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.28 Total: -64.62 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.04 Total: -25.95 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.96 kcal Total: -67.91 5.56 -62.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780209060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.616 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds