Wall clock time and date at job start Tue Mar 31 2020 11:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38166 * 119.97200 * 2 1 4 4 C 1.38712 * 119.94309 * 180.27180 * 3 2 1 5 5 O 1.35897 * 120.05729 * 179.72174 * 4 3 2 6 6 C 1.38761 * 119.88309 * 359.45167 * 4 3 2 7 7 C 1.50705 * 120.02006 * 180.29748 * 6 4 3 8 8 N 1.46901 * 109.47314 * 75.34625 * 7 6 4 9 9 C 1.46846 * 110.99844 * 51.43038 * 8 7 6 10 10 C 1.53041 * 109.52003 * 185.84064 * 9 8 7 11 11 C 1.53122 * 109.27962 * 300.82491 * 10 9 8 12 12 C 1.50691 * 109.57698 * 177.58919 * 11 10 9 13 13 H 1.08001 * 120.00260 * 240.27961 * 12 11 10 14 14 C 1.37881 * 120.00029 * 60.28524 * 12 11 10 15 15 N 1.31512 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00301 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47248 * 59.99652 * 16 14 12 18 18 H 1.48495 * 109.47595 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46827 * 299.99620 * 16 14 12 20 20 C 1.53123 * 109.16180 * 57.64991 * 11 10 9 21 21 C 1.46845 * 111.00026 * 175.64373 * 8 7 6 22 22 C 1.38115 * 119.94711 * 0.27467 * 6 4 3 23 23 C 1.38241 * 119.96982 * 179.70071 * 2 1 3 24 24 C 1.50707 * 119.94567 * 0.02562 * 23 2 1 25 25 C 1.53001 * 109.46920 * 114.84122 * 24 23 2 26 26 C 1.53002 * 109.47233 * 234.84293 * 24 23 2 27 27 H 1.08995 * 109.47551 * 264.33461 * 1 2 3 28 28 H 1.09006 * 109.46859 * 24.33947 * 1 2 3 29 29 H 1.09000 * 109.46865 * 144.33423 * 1 2 3 30 30 H 1.08003 * 120.03095 * 359.97438 * 3 2 1 31 31 H 0.96694 * 114.00252 * 265.07318 * 5 4 3 32 32 H 1.09002 * 109.46507 * 195.33974 * 7 6 4 33 33 H 1.08999 * 109.47317 * 315.34082 * 7 6 4 34 34 H 1.08996 * 109.46413 * 305.85581 * 9 8 7 35 35 H 1.09000 * 109.46423 * 65.83000 * 9 8 7 36 36 H 1.08994 * 109.50402 * 180.88309 * 10 9 8 37 37 H 1.09001 * 109.53753 * 60.78298 * 10 9 8 38 38 H 1.09001 * 109.52093 * 297.75364 * 11 10 9 39 39 H 0.97002 * 120.00012 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.50230 * 182.40412 * 20 11 10 41 41 H 1.08997 * 109.53248 * 62.30919 * 20 11 10 42 42 H 1.08997 * 109.46342 * 294.17963 * 21 8 7 43 43 H 1.09004 * 109.45768 * 54.14950 * 21 8 7 44 44 H 1.08003 * 119.97143 * 180.02562 * 22 6 4 45 45 H 1.09001 * 109.47048 * 354.84309 * 24 23 2 46 46 H 1.09001 * 109.47108 * 60.00223 * 25 24 23 47 47 H 1.08993 * 109.47356 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47252 * 300.00642 * 25 24 23 49 49 H 1.09001 * 109.47116 * 299.99974 * 26 24 23 50 50 H 1.09000 * 109.47076 * 59.99941 * 26 24 23 51 51 H 1.08993 * 109.46993 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0057 5 8 4.2656 2.3721 -0.0114 6 6 4.2752 -0.0072 0.0001 7 6 5.7822 -0.0116 0.0007 8 7 6.2724 0.3436 1.3392 9 6 5.6392 -0.4893 2.3696 10 6 6.0612 0.0033 3.7558 11 6 7.5857 -0.0730 3.8770 12 6 8.0132 0.4659 5.2177 13 1 8.6722 1.3199 5.2713 14 6 7.5632 -0.1313 6.3762 15 7 6.7604 -1.1709 6.3109 16 14 8.0925 0.5371 8.0382 17 1 7.6507 1.9490 8.1674 18 1 7.4755 -0.2748 9.1176 19 1 9.5717 0.4690 8.1508 20 6 8.2209 0.7638 2.7630 21 6 7.7363 0.2492 1.4057 22 6 3.5805 -1.2010 0.0058 23 6 2.1976 -1.1975 0.0063 24 6 1.4422 -2.5016 0.0125 25 6 1.7114 -3.2531 -1.2927 26 6 1.9048 -3.3534 1.1963 27 1 -0.3634 -0.1014 1.0226 28 1 -0.3633 0.9364 -0.4236 29 1 -0.3633 -0.8349 -0.5992 30 1 1.6573 2.1323 -0.0004 31 1 4.5248 2.6722 -0.8933 32 1 6.1427 -1.0049 -0.2664 33 1 6.1480 0.7150 -0.7248 34 1 4.5554 -0.4227 2.2750 35 1 5.9519 -1.5256 2.2418 36 1 5.6035 -0.6248 4.5201 37 1 5.7366 1.0351 3.8904 38 1 7.9072 -1.1101 3.7819 39 1 6.4434 -1.5909 7.1258 40 1 9.3061 0.6791 2.8180 41 1 7.9310 1.8078 2.8810 42 1 8.0392 -0.7905 1.2822 43 1 8.1755 0.8522 0.6109 44 1 4.1178 -2.1379 0.0108 45 1 0.3744 -2.3024 0.1034 46 1 2.7792 -3.4523 -1.3837 47 1 1.1647 -4.1960 -1.2885 48 1 1.3819 -2.6463 -2.1361 49 1 2.9726 -3.5525 1.1053 50 1 1.7129 -2.8179 2.1261 51 1 1.3587 -4.2966 1.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781570690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:22 Heat of formation + Delta-G solvation = -40.330028 kcal Electronic energy + Delta-G solvation = -27776.972854 eV Core-core repulsion = 24254.137387 eV Total energy + Delta-G solvation = -3522.835467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32630 -38.07576 -37.37836 -34.73250 -34.18298 -32.67741 -30.96910 -29.67003 -28.99822 -28.02382 -27.21644 -25.65595 -23.81949 -23.34433 -21.96986 -21.46360 -20.94282 -19.60589 -18.47726 -17.59109 -16.51123 -16.32250 -15.58517 -15.18526 -14.81236 -14.42590 -14.35568 -14.12564 -13.94683 -13.75026 -13.52704 -13.05586 -12.98749 -12.80129 -12.71865 -12.44905 -12.33810 -12.28316 -12.00857 -11.81332 -11.64088 -11.44324 -11.32445 -10.98271 -10.90247 -10.86159 -10.67655 -10.61396 -10.44045 -10.15584 -10.11201 -9.86838 -9.33155 -8.88997 -8.68505 -8.55394 -8.21496 -8.19442 -7.58210 -5.89880 -3.94890 1.32039 1.40056 3.37636 3.41679 3.44904 3.60964 4.32882 4.51072 4.57027 4.61568 4.75178 4.87115 5.00322 5.10385 5.12889 5.26530 5.37046 5.40156 5.48550 5.51185 5.55682 5.60302 5.70878 5.72751 5.76236 5.79545 5.82774 5.90817 5.97467 6.06050 6.12651 6.15190 6.20372 6.22572 6.31679 6.38126 6.45977 6.64256 6.68875 6.72278 6.74419 6.92366 6.94996 7.17457 7.27934 7.55022 7.71999 7.79708 7.88179 7.92850 8.14811 8.25405 8.56867 9.08478 9.68883 11.16261 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003581 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.656536 B = 7816.683668 C = 8464.421293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C -0.146 4.146 4 C 0.129 3.871 5 O -0.480 6.480 6 C -0.104 4.104 7 C 0.101 3.899 8 N -0.520 5.520 9 C 0.060 3.940 10 C -0.102 4.102 11 C 0.049 3.951 12 C -0.510 4.510 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.105 4.105 21 C 0.061 3.939 22 C -0.089 4.089 23 C -0.088 4.088 24 C -0.059 4.059 25 C -0.142 4.142 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.380 0.620 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -1.279 -18.039 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.165 4.165 4 C 0.084 3.916 5 O -0.289 6.289 6 C -0.105 4.105 7 C -0.027 4.027 8 N -0.245 5.245 9 C -0.067 4.067 10 C -0.140 4.140 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.107 4.107 23 C -0.088 4.088 24 C -0.077 4.077 25 C -0.200 4.200 26 C -0.203 4.203 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.235 0.765 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.168 -0.952 -17.206 21.095 hybrid contribution 0.633 -0.425 0.357 0.842 sum -11.535 -1.377 -16.848 20.465 Atomic orbital electron populations 1.20815 0.91389 1.02429 1.02412 1.19538 0.95730 0.92088 1.00086 1.21192 0.93366 0.97990 1.03916 1.18188 0.89331 0.85027 0.99081 1.84955 1.75327 1.36068 1.32542 1.20145 0.96019 0.92676 1.01615 1.20853 0.89935 0.98795 0.93099 1.62090 1.05908 1.54924 1.01555 1.22261 0.97592 0.93148 0.93705 1.21628 0.99557 1.00372 0.92451 1.18671 0.91616 0.94639 0.92046 1.21184 1.28548 1.14295 0.90775 0.92856 1.24959 0.95137 0.94939 0.98929 1.69875 1.33746 1.21724 1.27820 0.86710 0.78754 0.79002 0.83822 1.20320 1.21405 1.20405 1.21660 0.98526 1.00740 0.93373 1.22110 0.87067 0.98181 0.99287 1.20752 0.93347 0.97147 0.99477 1.19606 0.93364 0.94156 1.01720 1.20171 0.99572 0.92091 0.95840 1.21841 1.01955 0.99613 0.96565 1.21872 1.01654 0.99086 0.97715 0.91108 0.91770 0.91289 0.85766 0.76510 0.95122 0.90870 0.92448 0.96523 0.89191 0.93948 0.96317 0.93138 0.93306 0.92443 0.96046 0.92564 0.86146 0.90106 0.92499 0.92539 0.92764 0.92333 0.92229 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.13 36.01 0.33 -0.69 16 2 C -0.07 -0.88 5.88 -104.64 -0.62 -1.50 16 3 C -0.15 -1.88 9.62 -39.43 -0.38 -2.26 16 4 C 0.13 1.85 6.68 -39.21 -0.26 1.59 16 5 O -0.48 -6.74 12.83 -19.42 -0.25 -6.98 16 6 C -0.10 -1.51 3.78 -104.47 -0.39 -1.91 16 7 C 0.10 1.54 4.89 -4.97 -0.02 1.51 16 8 N -0.52 -9.81 4.76 -236.12 -1.12 -10.94 16 9 C 0.06 1.27 5.05 -3.83 -0.02 1.25 16 10 C -0.10 -2.56 5.12 -26.65 -0.14 -2.69 16 11 C 0.05 1.26 2.16 -91.65 -0.20 1.07 16 12 C -0.51 -14.49 8.56 -34.44 -0.29 -14.78 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 15 N -0.89 -26.12 11.37 55.43 0.63 -25.49 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 21 C 0.06 1.15 5.46 -3.84 -0.02 1.13 16 22 C -0.09 -1.19 7.64 -39.61 -0.30 -1.49 16 23 C -0.09 -1.07 4.79 -104.60 -0.50 -1.57 16 24 C -0.06 -0.58 2.83 -91.77 -0.26 -0.84 16 25 C -0.14 -1.23 9.05 37.16 0.34 -0.89 16 26 C -0.15 -1.55 8.95 37.16 0.33 -1.22 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 29 H 0.07 0.53 6.54 -51.93 -0.34 0.19 16 30 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.38 3.36 9.06 45.56 0.41 3.77 16 32 H 0.03 0.45 7.95 -51.93 -0.41 0.04 16 33 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 34 H 0.06 1.20 6.21 -51.93 -0.32 0.88 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 2.49 6.17 -51.93 -0.32 2.17 16 37 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 44 H 0.12 1.56 7.04 -52.48 -0.37 1.19 16 45 H 0.08 0.72 5.70 -51.93 -0.30 0.42 16 46 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.66 7.11 -51.93 -0.37 0.29 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -31.34 391.35 -10.80 -42.13 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.29 Total: 2.64 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.65 Total: -24.11 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.49 Total: -36.43 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.25 Total: -6.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.34 -10.80 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781570690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.804 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds