Wall clock time and date at job start Tue Mar 31 2020 11:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38166 * 119.97200 * 2 1 4 4 C 1.38712 * 119.94309 * 180.27180 * 3 2 1 5 5 O 1.35897 * 120.05729 * 179.72174 * 4 3 2 6 6 C 1.38761 * 119.88309 * 359.45167 * 4 3 2 7 7 C 1.50705 * 120.02006 * 180.29748 * 6 4 3 8 8 N 1.46901 * 109.47314 * 75.34625 * 7 6 4 9 9 C 1.46846 * 110.99844 * 51.43038 * 8 7 6 10 10 C 1.53041 * 109.52003 * 185.84064 * 9 8 7 11 11 C 1.53122 * 109.27962 * 300.82491 * 10 9 8 12 12 C 1.50691 * 109.57698 * 177.58919 * 11 10 9 13 13 H 1.08001 * 120.00260 * 240.27961 * 12 11 10 14 14 C 1.37881 * 120.00029 * 60.28524 * 12 11 10 15 15 N 1.31512 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00301 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47248 * 59.99652 * 16 14 12 18 18 H 1.48495 * 109.47595 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46827 * 299.99620 * 16 14 12 20 20 C 1.53123 * 109.16180 * 57.64991 * 11 10 9 21 21 C 1.46845 * 111.00026 * 175.64373 * 8 7 6 22 22 C 1.38115 * 119.94711 * 0.27467 * 6 4 3 23 23 C 1.38241 * 119.96982 * 179.70071 * 2 1 3 24 24 C 1.50707 * 119.94567 * 0.02562 * 23 2 1 25 25 C 1.53001 * 109.46920 * 114.84122 * 24 23 2 26 26 C 1.53002 * 109.47233 * 234.84293 * 24 23 2 27 27 H 1.08995 * 109.47551 * 264.33461 * 1 2 3 28 28 H 1.09006 * 109.46859 * 24.33947 * 1 2 3 29 29 H 1.09000 * 109.46865 * 144.33423 * 1 2 3 30 30 H 1.08003 * 120.03095 * 359.97438 * 3 2 1 31 31 H 0.96694 * 114.00252 * 265.07318 * 5 4 3 32 32 H 1.09002 * 109.46507 * 195.33974 * 7 6 4 33 33 H 1.08999 * 109.47317 * 315.34082 * 7 6 4 34 34 H 1.08996 * 109.46413 * 305.85581 * 9 8 7 35 35 H 1.09000 * 109.46423 * 65.83000 * 9 8 7 36 36 H 1.08994 * 109.50402 * 180.88309 * 10 9 8 37 37 H 1.09001 * 109.53753 * 60.78298 * 10 9 8 38 38 H 1.09001 * 109.52093 * 297.75364 * 11 10 9 39 39 H 0.97002 * 120.00012 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.50230 * 182.40412 * 20 11 10 41 41 H 1.08997 * 109.53248 * 62.30919 * 20 11 10 42 42 H 1.08997 * 109.46342 * 294.17963 * 21 8 7 43 43 H 1.09004 * 109.45768 * 54.14950 * 21 8 7 44 44 H 1.08003 * 119.97143 * 180.02562 * 22 6 4 45 45 H 1.09001 * 109.47048 * 354.84309 * 24 23 2 46 46 H 1.09001 * 109.47108 * 60.00223 * 25 24 23 47 47 H 1.08993 * 109.47356 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.47252 * 300.00642 * 25 24 23 49 49 H 1.09001 * 109.47116 * 299.99974 * 26 24 23 50 50 H 1.09000 * 109.47076 * 59.99941 * 26 24 23 51 51 H 1.08993 * 109.46993 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0057 5 8 4.2656 2.3721 -0.0114 6 6 4.2752 -0.0072 0.0001 7 6 5.7822 -0.0116 0.0007 8 7 6.2724 0.3436 1.3392 9 6 5.6392 -0.4893 2.3696 10 6 6.0612 0.0033 3.7558 11 6 7.5857 -0.0730 3.8770 12 6 8.0132 0.4659 5.2177 13 1 8.6722 1.3199 5.2713 14 6 7.5632 -0.1313 6.3762 15 7 6.7604 -1.1709 6.3109 16 14 8.0925 0.5371 8.0382 17 1 7.6507 1.9490 8.1674 18 1 7.4755 -0.2748 9.1176 19 1 9.5717 0.4690 8.1508 20 6 8.2209 0.7638 2.7630 21 6 7.7363 0.2492 1.4057 22 6 3.5805 -1.2010 0.0058 23 6 2.1976 -1.1975 0.0063 24 6 1.4422 -2.5016 0.0125 25 6 1.7114 -3.2531 -1.2927 26 6 1.9048 -3.3534 1.1963 27 1 -0.3634 -0.1014 1.0226 28 1 -0.3633 0.9364 -0.4236 29 1 -0.3633 -0.8349 -0.5992 30 1 1.6573 2.1323 -0.0004 31 1 4.5248 2.6722 -0.8933 32 1 6.1427 -1.0049 -0.2664 33 1 6.1480 0.7150 -0.7248 34 1 4.5554 -0.4227 2.2750 35 1 5.9519 -1.5256 2.2418 36 1 5.6035 -0.6248 4.5201 37 1 5.7366 1.0351 3.8904 38 1 7.9072 -1.1101 3.7819 39 1 6.4434 -1.5909 7.1258 40 1 9.3061 0.6791 2.8180 41 1 7.9310 1.8078 2.8810 42 1 8.0392 -0.7905 1.2822 43 1 8.1755 0.8522 0.6109 44 1 4.1178 -2.1379 0.0108 45 1 0.3744 -2.3024 0.1034 46 1 2.7792 -3.4523 -1.3837 47 1 1.1647 -4.1960 -1.2885 48 1 1.3819 -2.6463 -2.1361 49 1 2.9726 -3.5525 1.1053 50 1 1.7129 -2.8179 2.1261 51 1 1.3587 -4.2966 1.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781570690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:22 Heat of formation + Delta-G solvation = -58.695210 kcal Electronic energy + Delta-G solvation = -27777.769228 eV Core-core repulsion = 24254.137387 eV Total energy + Delta-G solvation = -3523.631841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35080 -39.61735 -38.39591 -36.11877 -35.36437 -34.16814 -32.61395 -31.45445 -29.93168 -29.31151 -27.97725 -27.31606 -25.25243 -24.31512 -23.72341 -23.03796 -22.00288 -20.62703 -20.29730 -18.60891 -18.44230 -17.46441 -17.01601 -16.52836 -16.23273 -15.89954 -15.51107 -15.33701 -14.97540 -14.80451 -14.77128 -14.62429 -14.30800 -14.19075 -13.88957 -13.72735 -13.45826 -13.23509 -13.20534 -13.04914 -13.00041 -12.83505 -12.60062 -12.53886 -12.38040 -12.24942 -12.02087 -11.89192 -11.87176 -11.72683 -11.51068 -11.35180 -11.11080 -10.81669 -10.66312 -10.38269 -9.62804 -9.21741 -9.05398 -8.08142 -6.21882 0.33402 0.40915 1.39800 1.42061 1.49364 2.43297 2.61148 3.17342 3.21049 3.40973 3.74950 3.76742 3.88585 4.13267 4.18431 4.23082 4.29192 4.33094 4.33827 4.44021 4.48910 4.56542 4.62708 4.63735 4.73885 4.79099 4.80154 4.85745 4.88663 4.92443 4.95657 4.96832 5.00654 5.08113 5.13260 5.18023 5.22788 5.29009 5.30741 5.35352 5.39783 5.49326 5.56055 5.60198 5.63393 5.76123 5.98555 6.00488 6.02569 6.29898 6.36095 6.40200 6.89391 7.01555 7.45649 8.96404 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003581 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.656536 B = 7816.683668 C = 8464.421293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.157 4.157 4 C 0.118 3.882 5 O -0.498 6.498 6 C -0.125 4.125 7 C 0.104 3.896 8 N -0.528 5.528 9 C 0.080 3.920 10 C -0.091 4.091 11 C 0.046 3.954 12 C -0.536 4.536 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.098 4.098 21 C 0.066 3.934 22 C -0.096 4.096 23 C -0.095 4.095 24 C -0.056 4.056 25 C -0.139 4.139 26 C -0.146 4.146 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.400 0.600 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.021 0.979 38 H -0.012 1.012 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.021 0.979 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.042 0.958 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -0.945 -19.399 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.175 4.175 4 C 0.073 3.927 5 O -0.310 6.310 6 C -0.126 4.126 7 C -0.023 4.023 8 N -0.253 5.253 9 C -0.047 4.047 10 C -0.129 4.129 11 C 0.028 3.972 12 C -0.574 4.574 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.136 4.136 21 C -0.061 4.061 22 C -0.115 4.115 23 C -0.095 4.095 24 C -0.074 4.074 25 C -0.196 4.196 26 C -0.203 4.203 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.258 0.742 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.006 0.994 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.066 -0.608 -18.597 22.736 hybrid contribution 0.884 -0.524 0.760 1.278 sum -12.183 -1.132 -17.837 21.630 Atomic orbital electron populations 1.20882 0.89125 1.03947 1.02994 1.19927 0.97443 0.91580 0.98556 1.21422 0.93073 0.99034 1.04021 1.18358 0.89997 0.84964 0.99379 1.84890 1.75482 1.36029 1.34604 1.20153 0.95648 0.93289 1.03466 1.20901 0.90633 0.99709 0.91025 1.62008 1.05831 1.54489 1.02954 1.21882 0.97701 0.92784 0.92377 1.21377 0.98960 0.98308 0.94282 1.18635 0.92250 0.93424 0.92919 1.21570 1.28903 1.14518 0.92379 0.93084 1.25760 0.95080 0.95166 1.02623 1.70022 1.34398 1.22653 1.28710 0.85682 0.78711 0.78396 0.79299 1.19842 1.20819 1.19459 1.21525 0.98750 0.99375 0.93962 1.22058 0.87204 0.98653 0.98189 1.20853 0.94170 0.96825 0.99658 1.19900 0.93086 0.95431 1.01057 1.20217 1.00036 0.90981 0.96141 1.21812 1.01741 1.00224 0.95829 1.21873 1.01178 0.99959 0.97338 0.90863 0.90429 0.89662 0.84549 0.74195 0.94507 0.88737 0.92364 0.97296 0.92409 0.96014 0.99363 0.93113 0.92575 0.93337 0.96041 0.89129 0.86290 0.88561 0.93272 0.91029 0.92195 0.93602 0.93920 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.13 71.24 0.65 -1.08 16 2 C -0.07 -1.66 5.88 -19.88 -0.12 -1.77 16 3 C -0.16 -3.86 9.62 22.37 0.22 -3.65 16 4 C 0.12 3.28 6.68 22.51 0.15 3.43 16 5 O -0.50 -13.42 12.83 -92.39 -1.19 -14.61 16 6 C -0.12 -3.55 3.78 -19.77 -0.07 -3.62 16 7 C 0.10 3.03 4.89 85.56 0.42 3.45 16 8 N -0.53 -19.62 4.76 -900.94 -4.29 -23.91 16 9 C 0.08 3.47 5.05 86.33 0.44 3.91 16 10 C -0.09 -4.75 5.12 30.65 0.16 -4.59 16 11 C 0.05 2.48 2.16 -11.46 -0.02 2.45 16 12 C -0.54 -31.21 8.56 25.60 0.22 -30.99 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.01 0.70 5.31 84.66 0.45 1.15 16 15 N -0.92 -55.30 11.37 21.45 0.24 -55.05 16 16 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C -0.10 -4.33 5.32 30.65 0.16 -4.17 16 21 C 0.07 2.42 5.46 86.32 0.47 2.90 16 22 C -0.10 -2.55 7.64 22.25 0.17 -2.38 16 23 C -0.09 -2.19 4.79 -19.85 -0.10 -2.29 16 24 C -0.06 -1.01 2.83 -11.54 -0.03 -1.04 16 25 C -0.14 -2.10 9.05 71.98 0.65 -1.45 16 26 C -0.15 -3.00 8.95 71.98 0.64 -2.36 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 0.99 8.05 -2.38 -0.02 0.97 16 29 H 0.08 1.03 6.54 -2.39 -0.02 1.01 16 30 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.40 6.48 9.06 -74.06 -0.67 5.81 16 32 H 0.04 1.03 7.95 -2.39 -0.02 1.01 16 33 H 0.09 2.34 8.00 -2.39 -0.02 2.32 16 34 H 0.06 2.49 6.21 -2.39 -0.01 2.48 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.06 3.37 6.17 -2.39 -0.01 3.35 16 37 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 2.72 8.12 -2.39 -0.02 2.70 16 44 H 0.12 3.09 7.04 -2.91 -0.02 3.07 16 45 H 0.10 1.46 5.70 -2.39 -0.01 1.44 16 46 H 0.05 0.82 7.70 -2.39 -0.02 0.80 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.04 1.04 7.11 -2.39 -0.02 1.02 16 50 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.89 391.35 1.48 -67.42 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.23 Total: 20.87 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 4.45 Total: -42.11 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -4.04 Total: -78.96 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.19 Total: -14.61 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.89 1.48 -67.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781570690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.720 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds