Wall clock time and date at job start Tue Mar 31 2020 12:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46586 * 2 1 4 4 C 1.52995 * 109.47455 * 240.00127 * 2 1 3 5 5 C 1.50710 * 109.46910 * 294.99632 * 4 2 1 6 6 C 1.38353 * 119.85238 * 269.72872 * 5 4 2 7 7 C 1.37966 * 120.14466 * 179.72591 * 6 5 4 8 8 C 1.39576 * 119.84660 * 0.54338 * 7 6 5 9 9 C 1.47846 * 120.14046 * 179.70644 * 8 7 6 10 10 O 1.21557 * 119.99939 * 149.85395 * 9 8 7 11 11 N 1.34778 * 120.00128 * 329.85509 * 9 8 7 12 12 C 1.46500 * 120.00106 * 6.25945 * 11 9 8 13 13 C 1.50700 * 109.46800 * 98.53088 * 12 11 9 14 14 H 1.08000 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00179 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99949 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00143 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47120 * 90.00340 * 17 15 13 19 19 H 1.48511 * 109.47094 * 210.00394 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00065 * 17 15 13 21 21 C 1.46501 * 119.99960 * 186.26682 * 11 9 8 22 22 C 1.53005 * 109.47137 * 84.18521 * 21 11 9 23 23 C 1.53004 * 109.46850 * 64.99967 * 22 21 11 24 24 C 1.53000 * 109.46894 * 184.99593 * 22 21 11 25 25 C 1.39574 * 119.71511 * 359.73153 * 8 7 6 26 26 C 1.37954 * 119.85163 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47619 * 299.99737 * 1 2 3 28 28 H 1.09001 * 109.47265 * 60.00362 * 1 2 3 29 29 H 1.09011 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47265 * 119.99638 * 2 1 3 31 31 H 1.08991 * 109.47599 * 59.99968 * 3 2 1 32 32 H 1.09006 * 109.47178 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47144 * 299.99252 * 3 2 1 34 34 H 1.08999 * 109.47498 * 54.99363 * 4 2 1 35 35 H 1.09001 * 109.47347 * 174.99805 * 4 2 1 36 36 H 1.08004 * 119.93024 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.07254 * 180.25270 * 7 6 5 38 38 H 1.08994 * 109.47564 * 218.53552 * 12 11 9 39 39 H 1.09002 * 109.47219 * 338.54007 * 12 11 9 40 40 H 0.96999 * 120.00303 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46888 * 204.17997 * 21 11 9 42 42 H 1.09000 * 109.47316 * 324.18636 * 21 11 9 43 43 H 1.08992 * 109.46972 * 305.00199 * 22 21 11 44 44 H 1.08992 * 109.47144 * 60.00337 * 23 22 21 45 45 H 1.09006 * 109.46487 * 179.97438 * 23 22 21 46 46 H 1.08993 * 109.47426 * 299.99711 * 23 22 21 47 47 H 1.09008 * 109.46668 * 60.00465 * 24 22 21 48 48 H 1.08998 * 109.46551 * 179.97438 * 24 22 21 49 49 H 1.08995 * 109.47452 * 300.00469 * 24 22 21 50 50 H 1.08000 * 120.07486 * 179.97438 * 25 8 7 51 51 H 1.08000 * 119.92756 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1734 -1.1888 6 6 2.4872 -3.0957 -0.5987 7 6 2.1258 -4.4256 -0.5350 8 6 0.9090 -4.8416 -1.0778 9 6 0.5182 -6.2662 -1.0190 10 8 -0.6567 -6.5722 -0.9598 11 7 1.4646 -7.2257 -1.0310 12 6 2.8812 -6.8582 -0.9638 13 6 3.3707 -7.0022 0.4542 14 1 2.6944 -7.3347 1.2278 15 6 4.6822 -6.7106 0.7638 16 7 5.5060 -6.3063 -0.1783 17 14 5.2891 -6.8898 2.5213 18 1 5.8066 -8.2663 2.7284 19 1 6.3761 -5.9094 2.7721 20 1 4.1674 -6.6362 3.4607 21 6 1.0768 -8.6362 -1.1114 22 6 0.8516 -9.0205 -2.5751 23 6 2.1740 -8.9202 -3.3381 24 6 0.3269 -10.4558 -2.6505 25 6 0.0631 -3.9069 -1.6768 26 6 0.4338 -2.5790 -1.7284 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6054 -0.2618 -2.1370 35 1 3.1264 -0.6442 -1.2951 36 1 3.4306 -2.7732 -0.1833 37 1 2.7850 -5.1439 -0.0705 38 1 3.4581 -7.5141 -1.6157 39 1 3.0042 -5.8246 -1.2873 40 1 6.4286 -6.1007 0.0395 41 1 1.8693 -9.2554 -0.6910 42 1 0.1564 -8.7926 -0.5489 43 1 0.1229 -8.3434 -3.0205 44 1 2.9027 -9.5974 -2.8927 45 1 2.0135 -9.1945 -4.3808 46 1 2.5478 -7.8978 -3.2843 47 1 -0.6153 -10.5272 -2.1070 48 1 0.1660 -10.7294 -3.6933 49 1 1.0556 -11.1329 -2.2051 50 1 -0.8796 -4.2224 -2.0990 51 1 -0.2197 -1.8548 -2.1919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792520457.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:16 Heat of formation + Delta-G solvation = -25.415036 kcal Electronic energy + Delta-G solvation = -27577.928767 eV Core-core repulsion = 24055.740062 eV Total energy + Delta-G solvation = -3522.188704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90872 -38.39399 -36.17430 -35.81440 -34.25520 -32.40454 -31.13260 -30.43036 -27.74493 -27.15870 -27.00117 -26.76126 -25.21169 -23.13721 -22.14180 -21.51607 -20.11340 -19.82743 -18.70243 -16.79736 -16.34376 -15.97244 -15.45726 -14.95341 -14.64931 -14.53655 -14.48085 -14.24186 -13.98513 -13.62776 -13.43621 -13.05774 -12.91904 -12.62142 -12.45204 -12.24672 -12.16407 -12.08758 -11.93313 -11.72914 -11.58536 -11.35699 -11.21208 -11.07500 -10.94709 -10.82951 -10.76139 -10.62345 -10.55902 -10.53131 -10.25872 -10.20651 -9.80000 -9.65292 -9.00505 -8.71668 -8.30446 -8.02672 -7.66871 -6.30018 -4.39274 1.51323 1.97999 3.16712 3.24686 3.28570 3.53122 3.93953 4.23633 4.42713 4.85994 4.90170 4.99343 5.00492 5.22405 5.30366 5.33905 5.40328 5.46605 5.50976 5.55793 5.60119 5.64978 5.70774 5.81930 5.90916 5.91507 5.95946 5.99304 6.03228 6.05776 6.10218 6.19523 6.24963 6.30426 6.33390 6.37397 6.38871 6.44697 6.50850 6.62160 6.66038 6.76800 6.82559 6.90681 7.09728 7.18211 7.20418 7.51077 7.59969 7.66119 7.93384 8.35004 8.70957 9.02416 9.29060 10.74064 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004678 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.655572 B = 5984.236424 C = 8005.739131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.067 4.067 6 C -0.132 4.132 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.556 3.444 10 O -0.573 6.573 11 N -0.586 5.586 12 C 0.204 3.796 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.126 3.874 22 C -0.111 4.111 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.070 4.070 26 C -0.143 4.143 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.201 0.799 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.268 0.732 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.121 0.879 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 7.077 -3.617 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.113 4.113 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.107 4.107 8 C -0.141 4.141 9 C 0.346 3.654 10 O -0.455 6.455 11 N -0.314 5.314 12 C 0.085 3.915 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.003 3.997 22 C -0.131 4.131 23 C -0.202 4.202 24 C -0.199 4.199 25 C -0.089 4.089 26 C -0.161 4.161 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.217 0.783 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.392 6.952 -3.625 9.516 hybrid contribution 0.565 -0.103 0.898 1.066 sum -4.827 6.849 -2.726 8.812 Atomic orbital electron populations 1.21922 0.95255 1.02489 1.01085 1.21082 0.96096 0.95580 0.98315 1.21847 1.00951 0.96062 1.01490 1.20688 1.01110 0.91538 0.97994 1.19994 0.94459 0.95113 0.97115 1.21065 0.99803 0.93052 1.01130 1.23443 0.95089 0.97680 0.94518 1.19955 0.96633 0.93532 1.03979 1.18344 0.85107 0.85672 0.76321 1.90652 1.18299 1.83669 1.52891 1.48040 1.08782 1.05021 1.69586 1.20404 0.74854 0.98927 0.97320 1.21481 0.95759 1.46585 0.94354 0.91732 1.24974 0.96356 0.94439 0.97763 1.69931 1.05726 1.43550 1.32577 0.86534 0.78743 0.78233 0.84364 1.20339 1.20868 1.19552 1.21350 1.00938 0.82382 0.95046 1.21489 0.97779 0.96763 0.97022 1.21880 0.96867 1.02763 0.98708 1.21744 1.00792 0.96163 1.01172 1.21080 0.98298 0.92393 0.97137 1.20750 0.96915 0.95327 1.03144 0.93155 0.92990 0.91768 0.90919 0.92849 0.92701 0.92846 0.91334 0.91020 0.86132 0.78308 0.94325 0.91508 0.92213 0.90113 0.91300 0.91434 0.92632 0.93720 0.91848 0.92836 0.93021 0.92680 0.86085 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.75 37.16 0.33 -1.31 16 2 C -0.09 -1.03 2.91 -90.62 -0.26 -1.29 16 3 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 4 C -0.08 -0.92 4.84 -27.88 -0.13 -1.06 16 5 C -0.07 -1.02 4.72 -104.53 -0.49 -1.51 16 6 C -0.13 -2.37 9.68 -39.64 -0.38 -2.75 16 7 C -0.09 -1.86 7.48 -39.18 -0.29 -2.16 16 8 C -0.14 -2.84 5.57 -104.97 -0.59 -3.42 16 9 C 0.56 12.35 7.42 -12.33 -0.09 12.26 16 10 O -0.57 -13.62 16.36 5.32 0.09 -13.53 16 11 N -0.59 -12.54 2.20 -176.17 -0.39 -12.93 16 12 C 0.20 4.70 3.94 -5.19 -0.02 4.68 16 13 C -0.54 -13.48 7.48 -34.44 -0.26 -13.74 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.73 5.34 -17.82 -0.10 1.64 16 16 N -0.88 -22.71 13.29 55.43 0.74 -21.97 16 17 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.13 2.39 4.83 -4.04 -0.02 2.38 16 22 C -0.11 -1.82 3.08 -90.62 -0.28 -2.10 16 23 C -0.14 -2.34 8.36 37.16 0.31 -2.03 16 24 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 25 C -0.07 -1.25 9.60 -39.19 -0.38 -1.63 16 26 C -0.14 -2.20 7.93 -39.64 -0.31 -2.51 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.80 6.26 -51.92 -0.33 0.47 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 36 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.20 4.61 3.09 -52.49 -0.16 4.45 16 38 H 0.04 0.93 6.32 -51.93 -0.33 0.60 16 39 H 0.07 1.60 4.06 -51.96 -0.21 1.38 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 42 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.15 6.18 -51.93 -0.32 0.83 16 47 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.12 2.07 7.93 -52.49 -0.42 1.66 16 51 H 0.12 1.48 8.03 -52.49 -0.42 1.06 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -26.89 398.49 -9.74 -36.63 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.87 Total: 8.25 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.29 Total: -17.13 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.35 Total: -34.90 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -26.89 -9.74 -36.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792520457.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.218 kcal (2) G-P(sol) polarization free energy of solvation -26.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds