Wall clock time and date at job start Tue Mar 31 2020 12:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46586 * 2 1 4 4 C 1.52995 * 109.47455 * 240.00127 * 2 1 3 5 5 C 1.50710 * 109.46910 * 294.99632 * 4 2 1 6 6 C 1.38353 * 119.85238 * 269.72872 * 5 4 2 7 7 C 1.37966 * 120.14466 * 179.72591 * 6 5 4 8 8 C 1.39576 * 119.84660 * 0.54338 * 7 6 5 9 9 C 1.47846 * 120.14046 * 179.70644 * 8 7 6 10 10 O 1.21557 * 119.99939 * 149.85395 * 9 8 7 11 11 N 1.34778 * 120.00128 * 329.85509 * 9 8 7 12 12 C 1.46500 * 120.00106 * 6.25945 * 11 9 8 13 13 C 1.50700 * 109.46800 * 98.53088 * 12 11 9 14 14 H 1.08000 * 120.00056 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00179 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99949 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00143 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47120 * 90.00340 * 17 15 13 19 19 H 1.48511 * 109.47094 * 210.00394 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00065 * 17 15 13 21 21 C 1.46501 * 119.99960 * 186.26682 * 11 9 8 22 22 C 1.53005 * 109.47137 * 84.18521 * 21 11 9 23 23 C 1.53004 * 109.46850 * 64.99967 * 22 21 11 24 24 C 1.53000 * 109.46894 * 184.99593 * 22 21 11 25 25 C 1.39574 * 119.71511 * 359.73153 * 8 7 6 26 26 C 1.37954 * 119.85163 * 359.97438 * 25 8 7 27 27 H 1.08997 * 109.47619 * 299.99737 * 1 2 3 28 28 H 1.09001 * 109.47265 * 60.00362 * 1 2 3 29 29 H 1.09011 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47265 * 119.99638 * 2 1 3 31 31 H 1.08991 * 109.47599 * 59.99968 * 3 2 1 32 32 H 1.09006 * 109.47178 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47144 * 299.99252 * 3 2 1 34 34 H 1.08999 * 109.47498 * 54.99363 * 4 2 1 35 35 H 1.09001 * 109.47347 * 174.99805 * 4 2 1 36 36 H 1.08004 * 119.93024 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.07254 * 180.25270 * 7 6 5 38 38 H 1.08994 * 109.47564 * 218.53552 * 12 11 9 39 39 H 1.09002 * 109.47219 * 338.54007 * 12 11 9 40 40 H 0.96999 * 120.00303 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46888 * 204.17997 * 21 11 9 42 42 H 1.09000 * 109.47316 * 324.18636 * 21 11 9 43 43 H 1.08992 * 109.46972 * 305.00199 * 22 21 11 44 44 H 1.08992 * 109.47144 * 60.00337 * 23 22 21 45 45 H 1.09006 * 109.46487 * 179.97438 * 23 22 21 46 46 H 1.08993 * 109.47426 * 299.99711 * 23 22 21 47 47 H 1.09008 * 109.46668 * 60.00465 * 24 22 21 48 48 H 1.08998 * 109.46551 * 179.97438 * 24 22 21 49 49 H 1.08995 * 109.47452 * 300.00469 * 24 22 21 50 50 H 1.08000 * 120.07486 * 179.97438 * 25 8 7 51 51 H 1.08000 * 119.92756 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1734 -1.1888 6 6 2.4872 -3.0957 -0.5987 7 6 2.1258 -4.4256 -0.5350 8 6 0.9090 -4.8416 -1.0778 9 6 0.5182 -6.2662 -1.0190 10 8 -0.6567 -6.5722 -0.9598 11 7 1.4646 -7.2257 -1.0310 12 6 2.8812 -6.8582 -0.9638 13 6 3.3707 -7.0022 0.4542 14 1 2.6944 -7.3347 1.2278 15 6 4.6822 -6.7106 0.7638 16 7 5.5060 -6.3063 -0.1783 17 14 5.2891 -6.8898 2.5213 18 1 5.8066 -8.2663 2.7284 19 1 6.3761 -5.9094 2.7721 20 1 4.1674 -6.6362 3.4607 21 6 1.0768 -8.6362 -1.1114 22 6 0.8516 -9.0205 -2.5751 23 6 2.1740 -8.9202 -3.3381 24 6 0.3269 -10.4558 -2.6505 25 6 0.0631 -3.9069 -1.6768 26 6 0.4338 -2.5790 -1.7284 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6054 -0.2618 -2.1370 35 1 3.1264 -0.6442 -1.2951 36 1 3.4306 -2.7732 -0.1833 37 1 2.7850 -5.1439 -0.0705 38 1 3.4581 -7.5141 -1.6157 39 1 3.0042 -5.8246 -1.2873 40 1 6.4286 -6.1007 0.0395 41 1 1.8693 -9.2554 -0.6910 42 1 0.1564 -8.7926 -0.5489 43 1 0.1229 -8.3434 -3.0205 44 1 2.9027 -9.5974 -2.8927 45 1 2.0135 -9.1945 -4.3808 46 1 2.5478 -7.8978 -3.2843 47 1 -0.6153 -10.5272 -2.1070 48 1 0.1660 -10.7294 -3.6933 49 1 1.0556 -11.1329 -2.2051 50 1 -0.8796 -4.2224 -2.0990 51 1 -0.2197 -1.8548 -2.1919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792520457.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:15 Heat of formation + Delta-G solvation = -35.518773 kcal Electronic energy + Delta-G solvation = -27578.366898 eV Core-core repulsion = 24055.740062 eV Total energy + Delta-G solvation = -3522.626835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49624 -39.79492 -37.66264 -37.05603 -35.82901 -34.23266 -32.40577 -31.86591 -29.54428 -28.32104 -28.03203 -27.93361 -26.60683 -24.96404 -23.54183 -22.91267 -21.48931 -20.79953 -20.28593 -18.69238 -18.03235 -17.53193 -16.80679 -16.43838 -16.25137 -16.01403 -15.91391 -15.29774 -15.18774 -14.98669 -14.79473 -14.52939 -14.39713 -14.12817 -13.84404 -13.66475 -13.32770 -13.15530 -13.03345 -12.97465 -12.96314 -12.76294 -12.67434 -12.61737 -12.34607 -12.16550 -12.10898 -11.91604 -11.80694 -11.62903 -11.60078 -11.59506 -11.48515 -11.28961 -10.76830 -10.54342 -9.75461 -9.53452 -9.36020 -8.23568 -6.38863 0.05397 0.55708 1.39021 1.42417 1.50984 1.89585 2.27336 2.42492 2.93256 3.05282 3.67968 3.85214 3.95019 3.99511 4.02471 4.12049 4.13596 4.16998 4.23664 4.42803 4.54476 4.59824 4.61265 4.65704 4.77025 4.80149 4.85566 4.87600 4.88049 4.93552 4.99687 5.00768 5.03507 5.09543 5.10910 5.15669 5.16640 5.23768 5.27876 5.34976 5.39492 5.43628 5.46331 5.52368 5.55678 5.61838 5.65324 5.78259 5.85274 6.00842 6.13316 6.53789 6.77938 7.24248 7.36021 8.80054 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004678 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.655572 B = 5984.236424 C = 8005.739131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.074 4.074 5 C -0.051 4.051 6 C -0.142 4.142 7 C -0.111 4.111 8 C -0.165 4.165 9 C 0.549 3.451 10 O -0.597 6.597 11 N -0.587 5.587 12 C 0.221 3.779 13 C -0.550 4.550 14 H 0.049 0.951 15 C 0.036 3.964 16 N -0.904 5.904 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.275 1.275 21 C 0.121 3.879 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.074 4.074 26 C -0.129 4.129 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.173 0.827 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.271 0.729 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.127 0.873 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 8.761 -4.293 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.111 4.111 5 C -0.052 4.052 6 C -0.160 4.160 7 C -0.128 4.128 8 C -0.168 4.168 9 C 0.339 3.661 10 O -0.481 6.481 11 N -0.315 5.315 12 C 0.101 3.899 13 C -0.589 4.589 14 H 0.067 0.933 15 C -0.167 4.167 16 N -0.541 5.541 17 Si 0.774 3.226 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.001 4.001 22 C -0.123 4.123 23 C -0.196 4.196 24 C -0.192 4.192 25 C -0.093 4.093 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.189 0.811 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.145 0.855 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.714 8.622 -4.303 11.203 hybrid contribution 0.637 -0.549 1.104 1.388 sum -5.077 8.073 -3.199 10.059 Atomic orbital electron populations 1.21922 0.94868 1.01587 1.02348 1.21063 0.96398 0.96605 0.96929 1.21806 1.01072 0.94579 1.02460 1.20780 1.01723 0.89084 0.99505 1.20346 0.93575 0.96542 0.94694 1.21167 1.00579 0.92497 1.01751 1.23127 0.95157 0.98562 0.95988 1.19958 0.97596 0.93064 1.06156 1.18721 0.84848 0.86644 0.75859 1.90610 1.18969 1.84227 1.54323 1.48082 1.08152 1.06033 1.69218 1.20112 0.75420 0.98237 0.96127 1.21518 0.95879 1.46723 0.94731 0.93311 1.25527 0.96333 0.94058 1.00777 1.69998 1.06003 1.44137 1.34010 0.85697 0.78100 0.78367 0.80457 1.19887 1.20075 1.20036 1.21518 1.00300 0.81245 0.97074 1.21411 0.97655 0.98513 0.94738 1.21812 0.96484 1.01116 1.00204 1.21698 1.00955 0.93813 1.02700 1.21257 0.98090 0.93143 0.96803 1.21122 0.97038 0.94751 1.01726 0.92501 0.91261 0.93644 0.92712 0.92247 0.92545 0.91541 0.88996 0.90541 0.85816 0.81091 0.95707 0.92093 0.91949 0.90367 0.92041 0.93040 0.92587 0.91261 0.94523 0.92577 0.90998 0.91750 0.85524 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.75 71.98 0.63 -2.21 16 2 C -0.09 -1.81 2.91 -10.79 -0.03 -1.84 16 3 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 4 C -0.07 -1.57 4.84 29.85 0.14 -1.43 16 5 C -0.05 -1.49 4.72 -19.81 -0.09 -1.58 16 6 C -0.14 -5.12 9.68 22.23 0.22 -4.90 16 7 C -0.11 -4.76 7.48 22.53 0.17 -4.59 16 8 C -0.16 -7.01 5.57 -20.09 -0.11 -7.12 16 9 C 0.55 25.49 7.42 86.79 0.64 26.13 16 10 O -0.60 -29.44 16.36 -3.89 -0.06 -29.51 16 11 N -0.59 -26.44 2.20 -829.55 -1.82 -28.27 16 12 C 0.22 10.70 3.94 85.63 0.34 11.04 16 13 C -0.55 -28.43 7.48 25.60 0.19 -28.24 16 14 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 15 C 0.04 1.82 5.34 84.65 0.45 2.27 16 16 N -0.90 -47.54 13.29 21.45 0.28 -47.26 16 17 Si 0.95 40.96 29.54 68.60 2.03 42.99 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 C 0.12 4.79 4.83 86.38 0.42 5.21 16 22 C -0.10 -3.44 3.08 -10.79 -0.03 -3.47 16 23 C -0.14 -4.50 8.36 71.98 0.60 -3.90 16 24 C -0.13 -3.43 9.19 71.98 0.66 -2.77 16 25 C -0.07 -2.63 9.60 22.52 0.22 -2.41 16 26 C -0.13 -3.68 7.93 22.23 0.18 -3.50 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.02 6.26 -2.38 -0.01 1.01 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.17 8.37 3.09 -2.91 -0.01 8.37 16 38 H 0.02 1.26 6.32 -2.39 -0.02 1.24 16 39 H 0.06 3.08 4.06 -2.41 -0.01 3.07 16 40 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 41 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 42 H 0.06 2.48 7.52 -2.39 -0.02 2.47 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.04 1.36 6.18 -2.39 -0.01 1.35 16 47 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.13 4.29 7.93 -2.91 -0.02 4.27 16 51 H 0.15 3.27 8.03 -2.91 -0.02 3.25 16 Total: -1.00 -59.89 398.49 6.56 -53.33 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.89 Total: 33.54 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.25 Total: -24.83 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.54 Total: -75.52 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.51 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -59.89 6.56 -53.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792520457.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.810 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds