Wall clock time and date at job start Tue Mar 31 2020 12:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.53003 * 109.47077 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47159 * 180.02562 * 4 3 2 6 6 C 1.38367 * 119.85071 * 270.25204 * 5 4 3 7 7 C 1.37957 * 120.14103 * 180.25369 * 6 5 4 8 8 C 1.39574 * 119.85422 * 359.49439 * 7 6 5 9 9 C 1.47842 * 120.14698 * 180.27215 * 8 7 6 10 10 O 1.21554 * 119.99990 * 329.83159 * 9 8 7 11 11 N 1.34776 * 120.00378 * 149.82934 * 9 8 7 12 12 C 1.46496 * 119.99759 * 6.26389 * 11 9 8 13 13 C 1.50704 * 109.47040 * 98.53384 * 12 11 9 14 14 H 1.08005 * 119.99442 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00357 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99783 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99930 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47436 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46813 * 119.99871 * 17 15 13 20 20 H 1.48494 * 109.47334 * 239.99860 * 17 15 13 21 21 C 1.46502 * 120.00199 * 186.26938 * 11 9 8 22 22 C 1.52998 * 109.46842 * 84.19008 * 21 11 9 23 23 C 1.52997 * 109.47707 * 64.99936 * 22 21 11 24 24 C 1.53005 * 109.46982 * 184.99897 * 22 21 11 25 25 C 1.39581 * 119.71226 * 0.25398 * 8 7 6 26 26 C 1.37954 * 119.84846 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47643 * 300.00373 * 1 2 3 29 29 H 1.09001 * 109.47121 * 60.00053 * 1 2 3 30 30 H 1.09000 * 109.47169 * 239.99868 * 2 1 3 31 31 H 1.09001 * 109.47121 * 119.99947 * 2 1 3 32 32 H 1.09000 * 109.47186 * 59.99878 * 3 2 1 33 33 H 1.08999 * 109.47160 * 299.99218 * 3 2 1 34 34 H 1.09000 * 109.47062 * 59.99986 * 4 3 2 35 35 H 1.09001 * 109.47315 * 300.00013 * 4 3 2 36 36 H 1.08001 * 119.92699 * 0.02562 * 6 5 4 37 37 H 1.08001 * 120.07319 * 179.77119 * 7 6 5 38 38 H 1.08999 * 109.47567 * 218.53308 * 12 11 9 39 39 H 1.09005 * 109.47783 * 338.53423 * 12 11 9 40 40 H 0.97000 * 120.00397 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46927 * 204.18824 * 21 11 9 42 42 H 1.08997 * 109.47019 * 324.18575 * 21 11 9 43 43 H 1.09003 * 109.47277 * 304.99401 * 22 21 11 44 44 H 1.09000 * 109.47010 * 299.99796 * 23 22 21 45 45 H 1.09007 * 109.46966 * 59.99854 * 23 22 21 46 46 H 1.08999 * 109.47395 * 179.97438 * 23 22 21 47 47 H 1.09010 * 109.46846 * 59.99669 * 24 22 21 48 48 H 1.09000 * 109.47639 * 179.97438 * 24 22 21 49 49 H 1.08994 * 109.46922 * 300.00099 * 24 22 21 50 50 H 1.07996 * 120.07301 * 180.02562 * 25 8 7 51 51 H 1.08003 * 119.92530 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5147 -1.1985 7 6 4.7623 4.8136 -1.2049 8 6 4.9954 5.4741 0.0023 9 6 5.4878 6.8681 0.0030 10 8 6.1893 7.2653 -0.9068 11 7 5.1589 7.6986 1.0122 12 6 4.4303 7.1856 2.1750 13 6 5.4005 6.9123 3.2953 14 1 6.4546 7.1014 3.1549 15 6 4.9428 6.4198 4.4990 16 7 3.6594 6.1891 4.6697 17 14 6.1456 6.0804 5.8873 18 1 7.5214 6.4216 5.4449 19 1 5.7861 6.9077 7.0670 20 1 6.0853 4.6427 6.2542 21 6 5.5300 9.1143 0.9465 22 6 4.4766 9.8808 0.1441 23 6 3.1418 9.8465 0.8910 24 6 4.9259 11.3329 -0.0310 25 6 4.7613 4.8129 1.2091 26 6 4.3010 3.5125 1.2015 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 4.1124 3.0040 -2.1319 37 1 4.9411 5.3198 -2.1421 38 1 3.6985 7.9249 2.5004 39 1 3.9181 6.2622 1.9045 40 1 3.3373 5.8423 5.5164 41 1 5.5860 9.5225 1.9556 42 1 6.5004 9.2134 0.4601 43 1 4.3571 9.4170 -0.8350 44 1 2.8217 8.8121 1.0157 45 1 3.2613 10.3105 1.8701 46 1 2.3915 10.3930 0.3196 47 1 5.8769 11.3573 -0.5632 48 1 4.1757 11.8790 -0.6030 49 1 5.0454 11.7967 0.9481 50 1 4.9393 5.3186 2.1466 51 1 4.1198 2.9996 2.1345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792526802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:19 Heat of formation + Delta-G solvation = -29.006169 kcal Electronic energy + Delta-G solvation = -27267.174071 eV Core-core repulsion = 23744.829644 eV Total energy + Delta-G solvation = -3522.344427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.87744 -38.22046 -36.07606 -35.60961 -34.29593 -32.42850 -31.97516 -30.40671 -28.63749 -27.69005 -26.77205 -25.82004 -24.13311 -22.99198 -22.10933 -21.34560 -20.74571 -20.03522 -18.70433 -16.80393 -16.35715 -15.93561 -15.47832 -15.27915 -14.65429 -14.53527 -14.49361 -14.17497 -14.05341 -13.60473 -13.39009 -13.07472 -12.96073 -12.74723 -12.52893 -12.43691 -12.30678 -12.01016 -11.92265 -11.67233 -11.37949 -11.29906 -11.22085 -11.11773 -11.02955 -10.93772 -10.73401 -10.60195 -10.54052 -10.51704 -10.26264 -10.20578 -9.78150 -9.65889 -9.01673 -8.72717 -8.31494 -8.04134 -7.67066 -6.30331 -4.39491 1.50560 1.97534 3.15534 3.25148 3.29727 3.52782 3.93704 4.23516 4.42739 4.78623 4.89424 5.00054 5.05936 5.20566 5.21735 5.28151 5.33781 5.43206 5.50215 5.52329 5.56741 5.68917 5.70245 5.77025 5.82096 5.91185 5.93273 5.99469 6.03812 6.05715 6.09213 6.14241 6.19415 6.30042 6.33492 6.36018 6.38400 6.44315 6.49736 6.61993 6.65360 6.76602 6.82321 6.89857 7.09008 7.17687 7.20092 7.50796 7.59480 7.65931 7.93188 8.34753 8.71071 9.02152 9.28936 10.73795 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.004352 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.619849 B = 6431.862835 C = 8160.805197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.080 4.080 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.069 4.069 8 C -0.138 4.138 9 C 0.556 3.444 10 O -0.573 6.573 11 N -0.586 5.586 12 C 0.204 3.796 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.126 3.874 22 C -0.111 4.111 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.090 4.090 26 C -0.132 4.132 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.268 0.732 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.201 0.799 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -5.074 -7.226 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.117 4.117 5 C -0.070 4.070 6 C -0.163 4.163 7 C -0.088 4.088 8 C -0.141 4.141 9 C 0.346 3.654 10 O -0.455 6.455 11 N -0.314 5.314 12 C 0.085 3.915 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.721 3.279 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.003 3.997 22 C -0.131 4.131 23 C -0.202 4.202 24 C -0.199 4.199 25 C -0.107 4.107 26 C -0.150 4.150 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.217 0.783 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.004 -4.906 -7.519 9.830 hybrid contribution 0.484 -0.198 0.921 1.059 sum -3.519 -5.103 -6.598 9.053 Atomic orbital electron populations 1.21778 0.96028 1.01283 1.01968 1.21545 0.95769 0.97059 1.01806 1.21612 0.94504 0.96436 1.02725 1.20619 0.95545 0.93052 1.02477 1.20030 0.97756 0.95669 0.93505 1.20749 1.03470 0.94959 0.97156 1.21081 0.96407 0.94155 0.97160 1.19963 1.05005 0.94783 0.94350 1.18337 0.80015 0.85338 0.81758 1.90651 1.39285 1.77797 1.37760 1.48038 1.55396 1.07978 1.20011 1.20408 0.92355 0.97066 0.81699 1.21527 0.94804 1.44528 0.97305 0.91661 1.24975 0.95328 0.94877 0.98363 1.69936 1.12865 1.43292 1.25689 0.86478 0.81423 0.78199 0.81762 1.19465 1.20696 1.20594 1.21350 0.97059 0.80808 1.00499 1.21489 0.96159 0.95632 0.99778 1.21880 0.96097 1.02418 0.99821 1.21745 1.00851 0.95836 1.01437 1.23447 0.91711 0.94074 1.01505 1.21065 1.01645 0.95227 0.97079 0.93035 0.92603 0.92827 0.92245 0.92054 0.91478 0.91899 0.91408 0.91124 0.86550 0.86042 0.94315 0.91526 0.92268 0.90100 0.91290 0.91435 0.91857 0.92628 0.93717 0.92834 0.93021 0.92679 0.78290 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.15 0.37 -0.99 16 2 C -0.12 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.30 5.20 -26.73 -0.14 -1.44 16 4 C -0.08 -0.96 5.34 -27.88 -0.15 -1.11 16 5 C -0.07 -1.08 5.14 -104.53 -0.54 -1.61 16 6 C -0.15 -2.26 9.68 -39.64 -0.38 -2.65 16 7 C -0.07 -1.25 9.60 -39.19 -0.38 -1.62 16 8 C -0.14 -2.85 5.57 -104.97 -0.59 -3.44 16 9 C 0.56 12.38 7.42 -12.33 -0.09 12.29 16 10 O -0.57 -13.65 16.36 5.32 0.09 -13.56 16 11 N -0.59 -12.56 2.20 -176.18 -0.39 -12.95 16 12 C 0.20 4.70 3.94 -5.19 -0.02 4.68 16 13 C -0.54 -13.49 7.48 -34.44 -0.26 -13.74 16 14 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 15 C 0.07 1.73 5.34 -17.82 -0.10 1.63 16 16 N -0.88 -22.70 13.29 55.43 0.74 -21.96 16 17 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.13 2.40 4.83 -4.04 -0.02 2.38 16 22 C -0.11 -1.82 3.08 -90.62 -0.28 -2.10 16 23 C -0.14 -2.34 8.36 37.16 0.31 -2.03 16 24 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 25 C -0.09 -1.87 7.48 -39.18 -0.29 -2.17 16 26 C -0.13 -2.38 9.68 -39.64 -0.38 -2.76 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.09 7.93 -52.49 -0.42 1.67 16 38 H 0.04 0.93 6.32 -51.93 -0.33 0.60 16 39 H 0.07 1.59 4.06 -51.96 -0.21 1.38 16 40 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 42 H 0.07 1.34 7.52 -51.93 -0.39 0.95 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.15 6.18 -51.93 -0.32 0.83 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.20 4.62 3.08 -52.49 -0.16 4.46 16 51 H 0.12 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -27.01 403.25 -10.23 -37.24 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.97 Total: 8.05 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.75 Total: -17.56 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.35 Total: -34.91 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.01 -10.23 -37.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792526802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds