Wall clock time and date at job start Tue Mar 31 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.53003 * 109.47077 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47159 * 180.02562 * 4 3 2 6 6 C 1.38367 * 119.85071 * 270.25204 * 5 4 3 7 7 C 1.37957 * 120.14103 * 180.25369 * 6 5 4 8 8 C 1.39574 * 119.85422 * 359.49439 * 7 6 5 9 9 C 1.47842 * 120.14698 * 180.27215 * 8 7 6 10 10 O 1.21554 * 119.99990 * 329.83159 * 9 8 7 11 11 N 1.34776 * 120.00378 * 149.82934 * 9 8 7 12 12 C 1.46496 * 119.99759 * 6.26389 * 11 9 8 13 13 C 1.50704 * 109.47040 * 98.53384 * 12 11 9 14 14 H 1.08005 * 119.99442 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00357 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99783 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99930 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47436 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46813 * 119.99871 * 17 15 13 20 20 H 1.48494 * 109.47334 * 239.99860 * 17 15 13 21 21 C 1.46502 * 120.00199 * 186.26938 * 11 9 8 22 22 C 1.52998 * 109.46842 * 84.19008 * 21 11 9 23 23 C 1.52997 * 109.47707 * 64.99936 * 22 21 11 24 24 C 1.53005 * 109.46982 * 184.99897 * 22 21 11 25 25 C 1.39581 * 119.71226 * 0.25398 * 8 7 6 26 26 C 1.37954 * 119.84846 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47643 * 300.00373 * 1 2 3 29 29 H 1.09001 * 109.47121 * 60.00053 * 1 2 3 30 30 H 1.09000 * 109.47169 * 239.99868 * 2 1 3 31 31 H 1.09001 * 109.47121 * 119.99947 * 2 1 3 32 32 H 1.09000 * 109.47186 * 59.99878 * 3 2 1 33 33 H 1.08999 * 109.47160 * 299.99218 * 3 2 1 34 34 H 1.09000 * 109.47062 * 59.99986 * 4 3 2 35 35 H 1.09001 * 109.47315 * 300.00013 * 4 3 2 36 36 H 1.08001 * 119.92699 * 0.02562 * 6 5 4 37 37 H 1.08001 * 120.07319 * 179.77119 * 7 6 5 38 38 H 1.08999 * 109.47567 * 218.53308 * 12 11 9 39 39 H 1.09005 * 109.47783 * 338.53423 * 12 11 9 40 40 H 0.97000 * 120.00397 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46927 * 204.18824 * 21 11 9 42 42 H 1.08997 * 109.47019 * 324.18575 * 21 11 9 43 43 H 1.09003 * 109.47277 * 304.99401 * 22 21 11 44 44 H 1.09000 * 109.47010 * 299.99796 * 23 22 21 45 45 H 1.09007 * 109.46966 * 59.99854 * 23 22 21 46 46 H 1.08999 * 109.47395 * 179.97438 * 23 22 21 47 47 H 1.09010 * 109.46846 * 59.99669 * 24 22 21 48 48 H 1.09000 * 109.47639 * 179.97438 * 24 22 21 49 49 H 1.08994 * 109.46922 * 300.00099 * 24 22 21 50 50 H 1.07996 * 120.07301 * 180.02562 * 25 8 7 51 51 H 1.08003 * 119.92530 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5147 -1.1985 7 6 4.7623 4.8136 -1.2049 8 6 4.9954 5.4741 0.0023 9 6 5.4878 6.8681 0.0030 10 8 6.1893 7.2653 -0.9068 11 7 5.1589 7.6986 1.0122 12 6 4.4303 7.1856 2.1750 13 6 5.4005 6.9123 3.2953 14 1 6.4546 7.1014 3.1549 15 6 4.9428 6.4198 4.4990 16 7 3.6594 6.1891 4.6697 17 14 6.1456 6.0804 5.8873 18 1 7.5214 6.4216 5.4449 19 1 5.7861 6.9077 7.0670 20 1 6.0853 4.6427 6.2542 21 6 5.5300 9.1143 0.9465 22 6 4.4766 9.8808 0.1441 23 6 3.1418 9.8465 0.8910 24 6 4.9259 11.3329 -0.0310 25 6 4.7613 4.8129 1.2091 26 6 4.3010 3.5125 1.2015 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 4.1124 3.0040 -2.1319 37 1 4.9411 5.3198 -2.1421 38 1 3.6985 7.9249 2.5004 39 1 3.9181 6.2622 1.9045 40 1 3.3373 5.8423 5.5164 41 1 5.5860 9.5225 1.9556 42 1 6.5004 9.2134 0.4601 43 1 4.3571 9.4170 -0.8350 44 1 2.8217 8.8121 1.0157 45 1 3.2613 10.3105 1.8701 46 1 2.3915 10.3930 0.3196 47 1 5.8769 11.3573 -0.5632 48 1 4.1757 11.8790 -0.6030 49 1 5.0454 11.7967 0.9481 50 1 4.9393 5.3186 2.1466 51 1 4.1198 2.9996 2.1345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792526802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:18 Heat of formation + Delta-G solvation = -38.878808 kcal Electronic energy + Delta-G solvation = -27267.602181 eV Core-core repulsion = 23744.829644 eV Total energy + Delta-G solvation = -3522.772537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48250 -39.65386 -37.65598 -36.69214 -35.83180 -34.24821 -33.12984 -31.84880 -29.81624 -29.47738 -28.03774 -27.24908 -25.44953 -24.64925 -23.53566 -22.45011 -21.78384 -21.43207 -20.28814 -18.69793 -18.04279 -17.51539 -16.72216 -16.49269 -16.37403 -16.12343 -15.92450 -15.48419 -15.04609 -14.90820 -14.78051 -14.52331 -14.42529 -14.16565 -13.77308 -13.70279 -13.59508 -13.33279 -13.15119 -13.02046 -12.98862 -12.71825 -12.65643 -12.41638 -12.22033 -12.11258 -12.04978 -11.98766 -11.89467 -11.63114 -11.59489 -11.57173 -11.41216 -11.26677 -10.77978 -10.56009 -9.77113 -9.55159 -9.36863 -8.23784 -6.39173 0.04256 0.54809 1.38333 1.42903 1.52563 1.88967 2.27223 2.42381 2.92641 3.05044 3.66700 3.83178 3.96169 3.99092 4.02175 4.14156 4.16589 4.19071 4.26608 4.40540 4.46547 4.55957 4.60834 4.65512 4.72705 4.77123 4.81445 4.86450 4.87889 4.91734 4.98808 4.99650 5.03063 5.07516 5.12487 5.16389 5.19207 5.23795 5.27691 5.34396 5.39067 5.41488 5.43471 5.53010 5.54422 5.60925 5.65254 5.77169 5.84843 6.00589 6.12489 6.53543 6.77834 7.23956 7.35756 8.80029 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.004352 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.619849 B = 6431.862835 C = 8160.805197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.113 4.113 4 C -0.076 4.076 5 C -0.055 4.055 6 C -0.133 4.133 7 C -0.073 4.073 8 C -0.165 4.165 9 C 0.549 3.451 10 O -0.597 6.597 11 N -0.587 5.587 12 C 0.221 3.779 13 C -0.550 4.550 14 H 0.049 0.951 15 C 0.036 3.964 16 N -0.904 5.904 17 Si 0.949 3.051 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.121 3.879 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.111 4.111 26 C -0.142 4.142 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.271 0.729 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.173 0.827 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -6.481 -8.184 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.056 4.056 6 C -0.150 4.150 7 C -0.092 4.092 8 C -0.168 4.168 9 C 0.339 3.661 10 O -0.481 6.481 11 N -0.315 5.315 12 C 0.101 3.899 13 C -0.589 4.589 14 H 0.067 0.933 15 C -0.167 4.167 16 N -0.542 5.542 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.001 4.001 22 C -0.123 4.123 23 C -0.196 4.196 24 C -0.192 4.192 25 C -0.129 4.129 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.174 0.826 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.190 0.810 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.554 -6.302 -8.469 11.497 hybrid contribution 0.632 0.180 1.178 1.349 sum -3.922 -6.121 -7.291 10.296 Atomic orbital electron populations 1.21791 0.95775 1.01992 1.01656 1.21516 0.95984 0.95659 1.02619 1.21577 0.93802 0.97725 1.01910 1.20699 0.95954 0.90597 1.04082 1.20408 0.95553 0.97227 0.92388 1.21162 1.01294 0.93796 0.98788 1.21271 0.96378 0.95246 0.96315 1.19970 1.07094 0.94219 0.95506 1.18713 0.79707 0.86212 0.81444 1.90610 1.40457 1.78497 1.38534 1.48082 1.54945 1.08976 1.19482 1.20111 0.91750 0.96321 0.81713 1.21557 0.94174 1.44863 0.98261 0.93276 1.25532 0.96595 0.94537 1.00030 1.70003 1.14032 1.43837 1.26325 0.85631 0.79267 0.78285 0.79329 1.19981 1.20130 1.19906 1.21518 0.97783 0.80050 1.00793 1.21412 0.95484 0.97203 0.98226 1.21813 0.96501 1.01044 1.00256 1.21699 1.01528 0.93514 1.02421 1.23138 0.93820 0.95461 1.00440 1.21172 1.01793 0.94406 0.98587 0.91841 0.93456 0.92663 0.90811 0.91839 0.93323 0.91793 0.88860 0.90513 0.82584 0.85437 0.95721 0.92138 0.91961 0.90354 0.92019 0.93040 0.94555 0.92574 0.91258 0.92566 0.90998 0.91744 0.81050 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -1.92 5.93 30.59 0.18 -1.74 16 3 C -0.11 -2.27 5.20 30.59 0.16 -2.11 16 4 C -0.08 -1.60 5.34 29.85 0.16 -1.44 16 5 C -0.06 -1.61 5.14 -19.81 -0.10 -1.72 16 6 C -0.13 -3.80 9.68 22.23 0.22 -3.59 16 7 C -0.07 -2.60 9.60 22.53 0.22 -2.38 16 8 C -0.17 -7.02 5.57 -20.09 -0.11 -7.14 16 9 C 0.55 25.49 7.42 86.79 0.64 26.14 16 10 O -0.60 -29.42 16.36 -3.89 -0.06 -29.48 16 11 N -0.59 -26.46 2.20 -829.58 -1.82 -28.29 16 12 C 0.22 10.71 3.94 85.64 0.34 11.05 16 13 C -0.55 -28.44 7.48 25.60 0.19 -28.25 16 14 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 15 C 0.04 1.81 5.34 84.66 0.45 2.26 16 16 N -0.90 -47.57 13.29 21.45 0.28 -47.28 16 17 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 C 0.12 4.79 4.83 86.38 0.42 5.21 16 22 C -0.10 -3.44 3.08 -10.79 -0.03 -3.48 16 23 C -0.14 -4.50 8.36 71.98 0.60 -3.90 16 24 C -0.13 -3.43 9.19 71.98 0.66 -2.77 16 25 C -0.11 -4.78 7.48 22.53 0.17 -4.61 16 26 C -0.14 -5.11 9.68 22.23 0.22 -4.90 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 35 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.13 4.32 7.93 -2.91 -0.02 4.29 16 38 H 0.02 1.25 6.32 -2.39 -0.02 1.24 16 39 H 0.06 3.07 4.06 -2.41 -0.01 3.06 16 40 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 41 H 0.08 3.08 8.03 -2.39 -0.02 3.06 16 42 H 0.06 2.49 7.52 -2.39 -0.02 2.48 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.35 6.18 -2.39 -0.01 1.34 16 45 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.17 8.39 3.08 -2.91 -0.01 8.38 16 51 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -60.05 403.25 6.39 -53.65 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.88 Total: 33.51 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 5.09 Total: -25.04 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.54 Total: -75.57 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -60.05 6.39 -53.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792526802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.774 kcal (2) G-P(sol) polarization free energy of solvation -60.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds