Wall clock time and date at job start Tue Mar 31 2020 12:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99793 * 2 1 4 4 O 1.21286 * 119.99516 * 185.27835 * 3 2 1 5 5 C 1.50694 * 119.99984 * 5.28175 * 3 2 1 6 6 C 1.52999 * 109.47033 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47433 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47433 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47033 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00136 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99967 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00264 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47236 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46965 * 120.00594 * 13 11 9 16 16 H 1.48503 * 109.47236 * 239.99864 * 13 11 9 17 17 C 1.39921 * 120.00063 * 180.02562 * 2 1 3 18 18 C 1.38879 * 120.07315 * 293.07776 * 17 2 1 19 19 C 1.38107 * 119.93029 * 180.25322 * 18 17 2 20 20 C 1.38282 * 120.07094 * 359.51952 * 19 18 17 21 21 C 1.50698 * 119.92827 * 180.25626 * 20 19 18 22 22 C 1.53002 * 109.47646 * 59.99468 * 21 20 19 23 23 C 1.53006 * 109.47020 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.47158 * 299.99230 * 21 20 19 25 25 C 1.38284 * 120.14039 * 0.22573 * 20 19 18 26 26 C 1.38107 * 120.06855 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.46955 * 269.99447 * 1 2 3 28 28 H 1.09000 * 109.47686 * 29.99643 * 1 2 3 29 29 H 1.09000 * 109.47084 * 150.00119 * 1 2 3 30 30 H 1.09000 * 109.47162 * 299.99707 * 5 3 2 31 31 H 1.09001 * 109.47173 * 60.00021 * 5 3 2 32 32 H 1.08999 * 109.47236 * 299.99499 * 6 5 3 33 33 H 1.09001 * 109.47237 * 59.99922 * 6 5 3 34 34 H 1.08999 * 109.46504 * 299.99952 * 7 6 5 35 35 H 1.09001 * 109.46969 * 59.99762 * 7 6 5 36 36 H 1.09000 * 109.46794 * 299.99798 * 8 7 6 37 37 H 1.08992 * 109.47005 * 59.99334 * 8 7 6 38 38 H 0.96999 * 120.00306 * 179.97438 * 12 11 9 39 39 H 1.07999 * 120.02945 * 0.04950 * 18 17 2 40 40 H 1.08009 * 119.96300 * 179.79336 * 19 18 17 41 41 H 1.09004 * 109.46830 * 59.99852 * 22 21 20 42 42 H 1.09002 * 109.47295 * 179.97438 * 22 21 20 43 43 H 1.08994 * 109.47086 * 300.00290 * 22 21 20 44 44 H 1.08998 * 109.47223 * 59.99765 * 23 21 20 45 45 H 1.08997 * 109.46638 * 179.97438 * 23 21 20 46 46 H 1.09004 * 109.46964 * 299.99260 * 23 21 20 47 47 H 1.09008 * 109.46551 * 60.00326 * 24 21 20 48 48 H 1.08997 * 109.47414 * 179.97438 * 24 21 20 49 49 H 1.08998 * 109.47344 * 300.00394 * 24 21 20 50 50 H 1.07999 * 119.96075 * 180.02562 * 25 20 19 51 51 H 1.08010 * 120.03229 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3478 1.1694 -0.0966 5 6 1.3901 2.4695 0.1201 6 6 2.3832 3.6331 0.0938 7 6 1.6231 4.9554 0.2151 8 6 2.6161 6.1189 0.1881 9 6 1.8674 7.4212 0.3082 10 1 0.7908 7.4192 0.3947 11 6 2.5567 8.6153 0.3077 12 7 3.8677 8.6178 0.2028 13 14 1.6285 10.2296 0.4559 14 1 0.1728 9.9558 0.5605 15 1 2.0843 10.9530 1.6701 16 1 1.8909 11.0635 -0.7446 17 6 2.1646 -1.2117 -0.0005 18 6 2.1046 -2.0505 1.1047 19 6 2.8005 -3.2434 1.1031 20 6 3.5485 -3.6077 -0.0014 21 6 4.3020 -4.9128 -0.0020 22 6 3.3175 -6.0703 0.1771 23 6 5.0416 -5.0741 -1.3316 24 6 5.3115 -4.9194 1.1477 25 6 3.6061 -2.7773 -1.1056 26 6 2.9166 -1.5806 -1.1082 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.6946 2.5670 -0.7135 31 1 0.8365 2.4850 1.0590 32 1 3.0790 3.5359 0.9271 33 1 2.9365 3.6173 -0.8453 34 1 0.9276 5.0523 -0.6186 35 1 1.0695 4.9714 1.1539 36 1 3.3120 6.0221 1.0215 37 1 3.1694 6.1027 -0.7509 38 1 4.3526 9.4579 0.2021 39 1 1.5169 -1.7685 1.9659 40 1 2.7569 -3.8945 1.9638 41 1 2.5983 -6.0656 -0.6420 42 1 3.8625 -7.0143 0.1763 43 1 2.7903 -5.9555 1.1242 44 1 5.7429 -4.2496 -1.4596 45 1 5.5869 -6.0178 -1.3318 46 1 4.3221 -5.0696 -2.1505 47 1 4.7842 -4.8047 2.0948 48 1 5.8561 -5.8635 1.1476 49 1 6.0128 -4.0949 1.0201 50 1 4.1908 -3.0648 -1.9668 51 1 2.9616 -0.9326 -1.9711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807582143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:57 Heat of formation + Delta-G solvation = -58.754653 kcal Electronic energy + Delta-G solvation = -25744.436571 eV Core-core repulsion = 22220.802153 eV Total energy + Delta-G solvation = -3523.634418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67152 -40.32665 -37.81089 -36.61844 -35.88124 -34.61201 -32.14411 -31.76895 -30.18820 -28.27237 -28.07932 -27.81424 -27.26716 -24.84799 -23.42071 -23.20569 -21.77485 -20.62811 -20.00627 -18.53251 -18.32483 -17.68092 -17.26600 -16.70653 -16.48125 -16.31132 -15.62878 -15.43990 -15.14392 -14.94102 -14.60519 -14.54916 -14.37537 -14.10577 -13.77177 -13.68430 -13.63209 -13.58793 -13.31102 -13.15962 -12.88159 -12.85151 -12.77044 -12.53489 -12.45153 -12.30953 -12.16890 -12.14025 -11.83171 -11.65591 -11.44342 -11.39290 -11.35205 -11.15348 -10.83995 -10.56188 -10.20806 -9.91266 -9.28173 -8.19025 -6.31298 0.24880 0.42206 1.40291 1.41368 1.52649 1.54893 1.91323 2.41707 2.71939 3.13704 3.62584 3.65815 3.78110 3.99199 4.02104 4.08422 4.12358 4.14421 4.21262 4.36830 4.43233 4.52496 4.57339 4.62329 4.68993 4.72292 4.77474 4.79736 4.81312 4.85173 4.91010 4.92656 4.99143 5.03366 5.05032 5.07765 5.16436 5.21609 5.31515 5.34741 5.35542 5.44954 5.46265 5.48200 5.56044 5.63751 5.68990 5.77219 5.87562 6.07185 6.23166 6.25091 6.87468 7.11823 7.38414 8.93471 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030460 B = 0.001881 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.008364 B =14881.458565 C =15335.035173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.577 5.577 3 C 0.510 3.490 4 O -0.576 6.576 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.094 4.094 8 C 0.018 3.982 9 C -0.540 4.540 10 H 0.068 0.932 11 C -0.009 4.009 12 N -0.938 5.938 13 Si 0.971 3.029 14 H -0.256 1.256 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.115 3.885 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.073 4.073 21 C -0.030 4.030 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.123 4.123 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.062 0.938 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.043 0.957 50 H 0.139 0.861 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -33.800 0.187 34.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.307 5.307 3 C 0.301 3.699 4 O -0.455 6.455 5 C -0.162 4.162 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.019 4.019 9 C -0.578 4.578 10 H 0.086 0.914 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.795 3.205 14 H -0.180 1.180 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.025 3.975 18 C -0.143 4.143 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.030 4.030 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.196 4.196 25 C -0.136 4.136 26 C -0.143 4.143 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.156 0.844 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.921 -33.667 0.128 34.371 hybrid contribution 0.320 1.366 -0.139 1.410 sum -6.601 -32.300 -0.011 32.968 Atomic orbital electron populations 1.22204 0.75589 1.05085 1.04041 1.45594 1.08634 1.03127 1.73363 1.21497 0.87647 0.86304 0.74476 1.90706 1.16757 1.87810 1.50193 1.21713 0.98970 0.88801 1.06666 1.21260 0.97493 0.93748 1.00907 1.21439 0.97818 0.92484 1.01437 1.19065 0.94711 0.93886 0.94287 1.21786 0.94159 0.92260 1.49594 0.91428 1.26119 0.95783 1.03794 0.94866 1.70144 1.08322 1.27664 1.51771 0.85313 0.79207 0.78321 0.77662 1.17986 1.20515 1.20496 1.17833 0.97734 0.87290 0.94670 1.21353 1.00951 0.95166 0.96796 1.21093 0.96480 0.96175 0.98775 1.20121 0.97193 0.96437 0.93543 1.19565 0.95050 0.91431 0.96908 1.21867 0.98370 0.96798 1.02128 1.21981 1.00111 1.02258 0.95935 1.21902 0.98283 1.02137 0.97293 1.21240 0.99385 0.93437 0.99584 1.21291 0.98424 0.96999 0.97556 0.90256 0.88606 0.89698 0.85972 0.86092 0.94053 0.93958 0.91850 0.91901 0.99803 0.99762 0.92877 0.84520 0.83586 0.92767 0.91097 0.91942 0.93043 0.91041 0.92069 0.92031 0.90880 0.93810 0.84354 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.10 127.77 1.29 2.21 16 2 N -0.58 -13.24 2.93 -654.57 -1.92 -15.16 16 3 C 0.51 15.30 7.55 87.65 0.66 15.96 16 4 O -0.58 -23.30 15.54 -3.05 -0.05 -23.35 16 5 C -0.12 -3.16 4.38 29.85 0.13 -3.03 16 6 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 7 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 8 C 0.02 0.98 4.97 29.85 0.15 1.13 16 9 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 10 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 11 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 12 N -0.94 -59.62 13.29 21.45 0.28 -59.34 16 13 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 C 0.11 2.78 4.83 38.15 0.18 2.97 16 18 C -0.12 -2.45 9.85 22.39 0.22 -2.23 16 19 C -0.11 -1.82 8.70 22.25 0.19 -1.62 16 20 C -0.07 -1.27 4.76 -19.84 -0.09 -1.37 16 21 C -0.03 -0.37 0.85 -52.93 -0.05 -0.42 16 22 C -0.13 -1.28 8.29 71.98 0.60 -0.68 16 23 C -0.15 -1.70 7.13 71.98 0.51 -1.19 16 24 C -0.14 -1.69 8.29 71.98 0.60 -1.09 16 25 C -0.12 -2.45 8.97 22.25 0.20 -2.25 16 26 C -0.12 -3.10 9.31 22.39 0.21 -2.89 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.96 6.48 -2.39 -0.02 0.95 16 29 H 0.08 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.12 2.45 7.24 -2.39 -0.02 2.43 16 31 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.04 1.69 8.10 -2.39 -0.02 1.68 16 33 H 0.04 1.72 8.10 -2.39 -0.02 1.71 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.15 1.75 7.09 -2.91 -0.02 1.73 16 41 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 0.54 7.38 -2.39 -0.02 0.52 16 44 H 0.05 0.69 7.51 -2.39 -0.02 0.68 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 47 H 0.06 0.69 7.38 -2.38 -0.02 0.67 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.14 2.44 5.88 -2.91 -0.02 2.42 16 51 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -78.30 407.26 7.01 -71.29 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.87 Total: 12.44 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 5.79 Total: -33.01 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.63 Total: -74.49 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.30 7.01 -71.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807582143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.533 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds