Wall clock time and date at job start Tue Mar 31 2020 12:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 C 1.52999 * 109.46846 * 119.99719 * 2 1 3 5 5 C 1.50703 * 109.47080 * 174.40216 * 4 2 1 6 6 C 1.37974 * 120.07612 * 102.49653 * 5 4 2 7 7 C 1.38343 * 120.14864 * 180.02562 * 6 5 4 8 8 C 1.38383 * 120.28733 * 0.02562 * 7 6 5 9 9 C 1.37934 * 120.14763 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.07347 * 282.22758 * 5 4 2 11 11 C 1.47851 * 120.14096 * 359.97438 * 10 5 4 12 12 O 1.21549 * 120.00124 * 354.04885 * 11 10 5 13 13 N 1.34776 * 119.99542 * 174.05135 * 11 10 5 14 14 C 1.46500 * 119.99713 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47294 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46898 * 299.99653 * 15 14 13 17 17 C 1.53000 * 109.46893 * 59.99707 * 15 14 13 18 18 C 1.53001 * 109.47311 * 180.02562 * 15 14 13 19 19 C 1.50697 * 109.47075 * 179.97438 * 18 15 14 20 20 H 1.08003 * 120.00202 * 359.97438 * 19 18 15 21 21 C 1.37874 * 119.99882 * 179.97438 * 19 18 15 22 22 N 1.31513 * 120.00054 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99945 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46963 * 60.00179 * 23 21 19 25 25 H 1.48501 * 109.47026 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47112 * 299.99893 * 23 21 19 27 27 H 1.08997 * 109.47359 * 300.00296 * 1 2 3 28 28 H 1.09001 * 109.47073 * 60.00299 * 1 2 3 29 29 H 1.09002 * 109.46725 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47359 * 239.99703 * 2 1 3 31 31 H 1.09007 * 109.46841 * 305.08154 * 3 2 1 32 32 H 1.09004 * 109.47118 * 65.07601 * 3 2 1 33 33 H 1.08996 * 109.46997 * 185.07931 * 3 2 1 34 34 H 1.09000 * 109.47363 * 294.40143 * 4 2 1 35 35 H 1.08995 * 109.47542 * 54.40391 * 4 2 1 36 36 H 1.07997 * 119.92930 * 0.02562 * 6 5 4 37 37 H 1.07996 * 119.85605 * 179.97438 * 7 6 5 38 38 H 1.07997 * 119.92658 * 180.02562 * 8 7 6 39 39 H 1.07996 * 120.07445 * 179.97438 * 9 8 7 40 40 H 0.97002 * 120.00301 * 359.97438 * 13 11 10 41 41 H 1.09003 * 109.47232 * 299.99610 * 14 13 11 42 42 H 1.09000 * 109.47715 * 59.99794 * 14 13 11 43 43 H 1.09001 * 109.46715 * 60.00132 * 16 15 14 44 44 H 1.08998 * 109.47077 * 179.97438 * 16 15 14 45 45 H 1.09000 * 109.47227 * 300.00030 * 16 15 14 46 46 H 1.08993 * 109.47019 * 60.00549 * 17 15 14 47 47 H 1.09001 * 109.46634 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.47174 * 299.99928 * 17 15 14 49 49 H 1.09003 * 109.46661 * 299.99955 * 18 15 14 50 50 H 1.09000 * 109.47317 * 59.99662 * 18 15 14 51 51 H 0.97000 * 120.00155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5406 -0.8424 1.1820 6 6 4.3367 0.0039 1.9262 7 6 5.7144 -0.1057 1.8651 8 6 6.3033 -1.0632 1.0580 9 6 5.5190 -1.9147 0.3082 10 6 4.1281 -1.8145 0.3712 11 6 3.2810 -2.7290 -0.4240 12 8 2.0729 -2.7081 -0.2911 13 7 3.8484 -3.5857 -1.2960 14 6 3.0090 -4.4914 -2.0843 15 6 3.8951 -5.3503 -2.9889 16 6 4.6923 -4.4450 -3.9302 17 6 4.8606 -6.1684 -2.1290 18 6 3.0185 -6.2958 -3.8126 19 6 3.8912 -7.1412 -4.7040 20 1 4.9638 -7.0164 -4.6853 21 6 3.3203 -8.0741 -5.5435 22 7 2.0142 -8.2265 -5.5660 23 14 4.4021 -9.1216 -6.6490 24 1 5.3400 -9.9156 -5.8152 25 1 3.5513 -10.0402 -7.4475 26 1 5.1748 -8.2422 -7.5626 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6042 1.9819 -0.8410 32 1 1.7528 1.9294 0.9320 33 1 3.1262 1.4438 -0.0910 34 1 1.7608 -0.1527 2.1364 35 1 1.5971 -1.7158 1.3009 36 1 3.8834 0.7535 2.5577 37 1 6.3331 0.5594 2.4493 38 1 7.3794 -1.1439 1.0151 39 1 5.9798 -2.6613 -0.3216 40 1 4.8124 -3.6021 -1.4023 41 1 2.4408 -5.1361 -1.4138 42 1 2.3215 -3.9087 -2.6973 43 1 5.3168 -3.7711 -3.3436 44 1 5.3238 -5.0568 -4.5743 45 1 4.0044 -3.8621 -4.5427 46 1 4.2927 -6.8133 -1.4585 47 1 5.4921 -6.7799 -2.7735 48 1 5.4851 -5.4945 -1.5425 49 1 2.4502 -6.9407 -3.1424 50 1 2.3309 -5.7126 -4.4252 51 1 1.6126 -8.8831 -6.1564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807723174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:13 Heat of formation + Delta-G solvation = -45.487386 kcal Electronic energy + Delta-G solvation = -27192.834105 eV Core-core repulsion = 23669.774999 eV Total energy + Delta-G solvation = -3523.059107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54302 -38.56923 -37.06534 -36.16184 -33.66471 -32.23448 -31.56770 -31.12059 -27.28166 -27.11418 -26.78828 -26.53094 -25.96499 -23.85573 -22.75452 -21.70009 -20.41845 -19.89222 -18.52050 -17.40639 -16.35638 -16.05248 -15.78517 -15.28098 -15.11236 -14.87555 -14.59339 -14.38139 -14.23365 -13.68266 -13.53755 -13.41295 -13.07595 -12.73419 -12.70282 -12.60586 -12.22434 -12.11214 -12.07762 -11.97515 -11.67805 -11.44385 -11.17567 -11.01664 -10.89875 -10.87799 -10.75796 -10.64707 -10.50755 -10.41296 -10.27710 -9.88678 -9.51463 -9.16567 -9.14968 -8.94497 -8.88307 -8.62837 -8.36451 -6.00605 -4.02076 0.76427 1.17781 2.94540 3.31379 3.36889 3.37281 3.42861 3.77158 4.44432 4.57186 4.64372 4.68061 4.84223 4.97069 5.03962 5.14806 5.21928 5.30976 5.34795 5.46653 5.53938 5.60773 5.61273 5.71171 5.73028 5.75704 5.77411 5.85647 5.96152 6.04181 6.11877 6.14929 6.18468 6.21458 6.24696 6.27267 6.33217 6.37863 6.40519 6.56228 6.60938 6.61189 6.73229 6.77766 7.04463 7.05779 7.11353 7.62728 7.74682 7.75306 7.97880 8.38756 8.43837 9.02477 9.61075 11.10822 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.002897 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.522282 B = 9661.914216 C =10670.161425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.085 4.085 5 C -0.016 4.016 6 C -0.130 4.130 7 C -0.096 4.096 8 C -0.135 4.135 9 C -0.084 4.084 10 C -0.133 4.133 11 C 0.549 3.451 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.129 3.871 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.037 3.963 19 C -0.512 4.512 20 H 0.059 0.941 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.396 0.604 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 18.076 14.831 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.122 4.122 5 C -0.017 4.017 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.153 4.153 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.336 3.664 12 O -0.409 6.409 13 N -0.368 5.368 14 C 0.007 3.993 15 C -0.074 4.074 16 C -0.184 4.184 17 C -0.184 4.184 18 C 0.000 4.000 19 C -0.551 4.551 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.233 0.767 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.027 17.955 14.808 23.810 hybrid contribution 1.172 -0.672 -0.747 1.544 sum 6.199 17.283 14.060 23.126 Atomic orbital electron populations 1.21762 0.95125 1.02158 1.00813 1.20934 0.95695 0.94827 0.98368 1.21934 1.00878 0.96617 1.01201 1.20958 0.89991 1.03587 0.97634 1.20043 0.96674 0.92190 0.92842 1.21054 0.93505 0.99749 1.00490 1.21310 0.94892 0.97548 0.97705 1.21057 0.99992 0.96467 0.97825 1.21337 0.92620 0.98372 0.97993 1.19933 0.93490 0.98898 1.01266 1.18262 0.87760 0.80431 0.79972 1.90711 1.14117 1.69710 1.66397 1.46174 1.11032 1.38421 1.41205 1.21639 0.93195 0.91196 0.93315 1.20916 0.96222 0.95451 0.94762 1.21764 0.99546 0.98252 0.98868 1.21761 0.98787 0.99007 0.98863 1.19075 0.94110 0.92897 0.93939 1.21144 0.93184 1.19074 1.21661 0.92323 1.25007 0.94847 0.97334 0.97250 1.69951 1.09457 1.35183 1.38792 0.86714 0.80428 0.80372 0.80808 1.20329 1.21387 1.20319 0.93359 0.93128 0.92025 0.90703 0.93046 0.93078 0.92976 0.92197 0.87602 0.85686 0.85850 0.85621 0.85710 0.76743 0.91688 0.91692 0.95363 0.91404 0.93319 0.93310 0.91400 0.95382 0.96345 0.96348 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.24 16 2 C -0.08 -0.95 2.33 -90.62 -0.21 -1.16 16 3 C -0.15 -1.48 8.84 37.16 0.33 -1.15 16 4 C -0.08 -1.00 4.10 -27.88 -0.11 -1.11 16 5 C -0.02 -0.19 4.42 -104.23 -0.46 -0.65 16 6 C -0.13 -1.22 9.13 -39.64 -0.36 -1.58 16 7 C -0.10 -0.80 10.04 -39.49 -0.40 -1.20 16 8 C -0.14 -1.19 10.03 -39.64 -0.40 -1.59 16 9 C -0.08 -0.88 9.53 -39.19 -0.37 -1.25 16 10 C -0.13 -1.67 5.83 -104.96 -0.61 -2.28 16 11 C 0.55 8.25 7.25 -12.33 -0.09 8.16 16 12 O -0.53 -9.20 11.93 5.32 0.06 -9.14 16 13 N -0.72 -10.46 4.91 -61.24 -0.30 -10.76 16 14 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 15 C -0.07 -1.37 0.54 -154.50 -0.08 -1.45 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 18 C 0.04 0.91 4.04 -27.88 -0.11 0.79 16 19 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 20 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 23 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.08 6.54 -51.93 -0.34 0.74 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.53 7.21 -51.93 -0.37 0.15 16 34 H 0.06 0.60 7.98 -51.93 -0.41 0.18 16 35 H 0.11 1.49 5.92 -51.93 -0.31 1.18 16 36 H 0.13 0.93 8.02 -52.49 -0.42 0.51 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.12 6.45 -52.49 -0.34 0.78 16 40 H 0.40 4.99 4.23 -40.82 -0.17 4.82 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 48 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -29.75 392.98 -9.62 -39.36 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.70 Total: 3.72 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.32 Total: -19.59 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.44 Total: -36.36 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.06 Total: -9.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.75 -9.62 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807723174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.123 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds