Wall clock time and date at job start Tue Mar 31 2020 11:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.52995 * 109.47614 * 239.99805 * 2 1 3 5 5 C 1.50700 * 109.46650 * 59.99676 * 4 2 1 6 6 H 1.07998 * 120.00558 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99974 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99510 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46812 * 89.99919 * 9 7 5 11 11 H 1.48501 * 109.46947 * 210.00270 * 9 7 5 12 12 H 1.48501 * 109.46874 * 330.00042 * 9 7 5 13 13 C 1.53004 * 109.47091 * 119.99794 * 2 1 3 14 14 N 1.46908 * 109.47137 * 299.99973 * 13 2 1 15 15 C 1.46894 * 110.99755 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.46995 * 180.02562 * 15 14 13 17 17 C 1.38286 * 120.11522 * 89.99569 * 16 15 14 18 18 C 1.37934 * 120.35095 * 179.57035 * 17 16 15 19 19 C 1.39286 * 120.24162 * 0.37474 * 18 17 16 20 20 C 1.38888 * 118.87231 * 0.13818 * 19 18 17 21 21 C 1.37743 * 120.78793 * 359.63051 * 20 19 18 22 22 C 1.51647 * 107.03971 * 179.45277 * 20 19 18 23 23 C 1.54714 * 101.91590 * 344.49663 * 22 20 19 24 24 C 1.53003 * 110.74842 * 266.98906 * 23 22 20 25 25 C 1.52995 * 110.90234 * 143.70991 * 23 22 20 26 26 O 1.36134 * 129.88581 * 180.56166 * 19 18 17 27 27 H 1.09005 * 109.47008 * 300.00103 * 1 2 3 28 28 H 1.08999 * 109.46666 * 60.00049 * 1 2 3 29 29 H 1.09001 * 109.46660 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47432 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47335 * 300.00068 * 3 2 1 32 32 H 1.09004 * 109.47573 * 59.99599 * 3 2 1 33 33 H 1.08993 * 109.47522 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47166 * 300.00342 * 4 2 1 35 35 H 0.97000 * 119.99459 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47170 * 180.02562 * 13 2 1 37 37 H 1.08996 * 109.47082 * 60.00191 * 13 2 1 38 38 H 1.00901 * 110.99836 * 56.04488 * 14 13 2 39 39 H 1.09000 * 109.47407 * 60.00337 * 15 14 13 40 40 H 1.09002 * 109.47376 * 299.99794 * 15 14 13 41 41 H 1.08002 * 119.82806 * 359.85655 * 17 16 15 42 42 H 1.07997 * 119.87774 * 180.35239 * 18 17 16 43 43 H 1.08005 * 120.00903 * 180.28312 * 21 20 19 44 44 H 1.09002 * 110.93677 * 226.34520 * 22 20 19 45 45 H 1.08997 * 110.94009 * 102.65391 * 22 20 19 46 46 H 1.08996 * 109.46724 * 174.82470 * 24 23 22 47 47 H 1.08994 * 109.46687 * 294.82313 * 24 23 22 48 48 H 1.08996 * 109.47235 * 54.82140 * 24 23 22 49 49 H 1.08996 * 109.47330 * 305.08423 * 25 23 22 50 50 H 1.09003 * 109.47040 * 65.08888 * 25 23 22 51 51 H 1.09002 * 109.46866 * 185.08287 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0402 -0.7212 -1.2491 5 6 1.5378 -0.0109 -2.4796 6 1 0.9171 0.8674 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6259 -1.5521 -3.8525 9 14 1.2484 0.3987 -5.2572 10 1 2.2272 1.4396 -5.6614 11 1 1.0826 -0.5805 -6.3613 12 1 -0.0593 1.0371 -4.9613 13 6 2.0401 -0.7212 1.2493 14 7 1.5504 -0.0286 2.4488 15 6 2.0219 -0.6944 3.6703 16 6 1.5003 0.0422 4.8772 17 6 0.2839 -0.3099 5.4328 18 6 -0.1941 0.3552 6.5427 19 6 0.5416 1.3934 7.1092 20 6 1.7568 1.7449 6.5358 21 6 2.2344 1.0763 5.4303 22 6 2.3141 2.8982 7.3475 23 6 1.0707 3.3574 8.1455 24 6 0.3353 4.4771 7.4062 25 6 1.4619 3.8069 9.5547 26 8 0.2669 2.1664 8.1955 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1301 -0.7216 -1.2489 34 1 1.6768 -1.7490 -1.2492 35 1 2.8602 -1.8834 -4.7335 36 1 3.1300 -0.7208 1.2495 37 1 1.6768 -1.7489 1.2493 38 1 0.5438 0.0414 2.4402 39 1 3.1118 -0.6938 3.6870 40 1 1.6588 -1.7220 3.6874 41 1 -0.2929 -1.1130 4.9982 42 1 -1.1423 0.0701 6.9738 43 1 3.1831 1.3571 4.9973 44 1 2.6749 3.6944 6.6963 45 1 3.1032 2.5573 8.0178 46 1 -0.5841 4.7209 7.9384 47 1 0.9724 5.3601 7.3580 48 1 0.0938 4.1477 6.3957 49 1 2.0109 3.0073 10.0518 50 1 2.0911 4.6948 9.4913 51 1 0.5624 4.0390 10.1248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808429152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:51 Heat of formation + Delta-G solvation = -47.033827 kcal Electronic energy + Delta-G solvation = -26334.681342 eV Core-core repulsion = 22811.555177 eV Total energy + Delta-G solvation = -3523.126165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27663 -39.54856 -38.64123 -35.75998 -34.78249 -34.19734 -32.45908 -31.36539 -29.00168 -28.38776 -27.89871 -27.83115 -26.95448 -25.60117 -23.83966 -23.00294 -21.97700 -21.44524 -19.53402 -18.31928 -18.16083 -17.21790 -17.08293 -16.66848 -16.54355 -15.72329 -15.69527 -15.34660 -15.14882 -14.96816 -14.61876 -14.47026 -14.25849 -14.09730 -13.89481 -13.70139 -13.53312 -13.39335 -13.31805 -13.01791 -12.91044 -12.78346 -12.70154 -12.59854 -12.46625 -12.37218 -12.22694 -12.13214 -11.95490 -11.85139 -11.66498 -11.53490 -11.35541 -10.84782 -10.72929 -10.49332 -9.80809 -9.31852 -8.96891 -8.13005 -6.19654 0.32396 0.40890 1.41437 1.41829 1.52400 2.24232 2.44393 2.69076 3.20743 3.43188 3.47369 3.53752 3.85239 3.94892 3.97090 4.04986 4.15365 4.22779 4.25404 4.40070 4.41777 4.45178 4.64090 4.64963 4.70837 4.72299 4.74282 4.82403 4.83389 4.84487 4.89011 4.98158 5.00818 5.09567 5.11888 5.22148 5.22947 5.23480 5.27139 5.31986 5.45553 5.53289 5.55471 5.59936 5.65477 5.67914 5.72597 5.88970 5.94314 6.09437 6.28124 6.38594 6.53633 6.95441 7.47333 8.99162 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026077 B = 0.002184 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.482051 B =12818.127784 C =13203.946717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C -0.106 4.106 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.082 3.918 14 N -0.679 5.679 15 C 0.104 3.896 16 C -0.110 4.110 17 C -0.081 4.081 18 C -0.150 4.150 19 C 0.088 3.912 20 C -0.183 4.183 21 C -0.057 4.057 22 C -0.099 4.099 23 C 0.093 3.907 24 C -0.161 4.161 25 C -0.138 4.138 26 O -0.317 6.317 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.065 0.935 33 H -0.015 1.015 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.343 0.657 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 9.655 27.701 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.047 4.047 14 N -0.311 5.311 15 C -0.024 4.024 16 C -0.111 4.111 17 C -0.100 4.100 18 C -0.168 4.168 19 C 0.042 3.958 20 C -0.184 4.184 21 C -0.076 4.076 22 C -0.135 4.135 23 C 0.056 3.944 24 C -0.218 4.218 25 C -0.195 4.195 26 O -0.233 6.233 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.163 0.837 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.088 0.912 47 H 0.115 0.885 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.120 0.880 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.638 9.990 27.771 29.631 hybrid contribution -0.519 -0.930 -1.378 1.741 sum -3.156 9.059 26.393 28.083 Atomic orbital electron populations 1.21690 0.94817 1.00438 1.01054 1.20483 0.95699 0.96044 0.93237 1.21494 0.99152 0.95341 1.00372 1.19009 0.94106 0.94024 0.92652 1.21616 1.30182 1.11811 0.91464 0.91689 1.25932 0.95815 0.95943 1.02584 1.70111 1.38912 1.24854 1.23979 0.85575 0.79080 0.78211 0.78966 1.20150 1.21283 1.18732 1.21837 0.99273 0.94312 0.89293 1.60555 1.16746 1.53410 1.00374 1.20789 1.00428 0.94549 0.86636 1.19688 0.95843 0.97988 0.97569 1.20956 0.95182 0.99292 0.94543 1.20416 1.01019 0.97607 0.97775 1.19766 0.93969 0.93982 0.88043 1.20997 0.96286 1.01930 0.99214 1.20318 1.00037 0.93804 0.93394 1.21956 0.97882 0.95891 0.97807 1.23037 0.88739 0.84187 0.98413 1.22201 1.01767 0.98057 0.99803 1.21866 1.02785 1.02742 0.92079 1.86835 1.64553 1.32021 1.39855 0.91631 0.93544 0.94319 0.95012 0.94367 0.91620 0.99683 0.99681 0.93206 0.92266 0.96150 0.83728 0.90311 0.93901 0.83918 0.84599 0.85158 0.87829 0.88211 0.91206 0.88512 0.93510 0.91655 0.88040 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 3 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 4 C 0.04 2.05 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.43 7.65 25.60 0.20 -28.23 16 6 H 0.07 3.47 5.68 -2.91 -0.02 3.45 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 13 C 0.08 2.75 4.65 86.30 0.40 3.16 16 14 N -0.68 -18.48 5.70 -517.92 -2.95 -21.43 16 15 C 0.10 2.42 5.82 85.56 0.50 2.91 16 16 C -0.11 -2.44 5.40 -19.82 -0.11 -2.54 16 17 C -0.08 -1.67 9.68 22.21 0.21 -1.45 16 18 C -0.15 -3.19 10.06 22.45 0.23 -2.97 16 19 C 0.09 2.00 6.95 22.68 0.16 2.16 16 20 C -0.18 -3.88 6.26 -19.52 -0.12 -4.00 16 21 C -0.06 -1.25 9.70 22.18 0.22 -1.03 16 22 C -0.10 -1.51 6.18 30.73 0.19 -1.32 16 23 C 0.09 1.42 1.26 -10.21 -0.01 1.41 16 24 C -0.16 -2.18 8.85 71.98 0.64 -1.54 16 25 C -0.14 -1.36 8.96 71.98 0.65 -0.72 16 26 O -0.32 -6.97 10.52 -95.07 -1.00 -7.97 16 27 H 0.06 1.95 6.57 -2.38 -0.02 1.93 16 28 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 32 H 0.06 2.19 7.60 -2.38 -0.02 2.18 16 33 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.34 8.95 6.76 -89.69 -0.61 8.34 16 39 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 40 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.10 1.31 7.92 -2.39 -0.02 1.29 16 45 H 0.10 1.29 7.91 -2.39 -0.02 1.27 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 49 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 50 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -66.00 399.85 3.48 -62.53 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.28 Total: 18.75 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 4.84 Total: -41.41 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.67 Total: -78.56 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.00 Total: -7.97 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.00 3.48 -62.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds