Wall clock time and date at job start Tue Mar 31 2020 12:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 C 1.53001 * 109.46893 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47221 * 179.97438 * 4 3 2 6 6 C 1.38278 * 119.93115 * 269.72771 * 5 4 3 7 7 C 1.38111 * 120.06868 * 179.76915 * 6 5 4 8 8 C 1.38877 * 119.92979 * 0.50229 * 7 6 5 9 9 N 1.39929 * 120.06714 * 179.72655 * 8 7 6 10 10 C 1.46500 * 119.99536 * 112.86119 * 9 8 7 11 11 C 1.34773 * 119.99965 * 292.85151 * 9 8 7 12 12 O 1.21281 * 120.00235 * 5.28541 * 11 9 8 13 13 C 1.50702 * 119.99673 * 185.28024 * 11 9 8 14 14 C 1.53001 * 109.47136 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47471 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47097 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46775 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99936 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99814 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00448 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47076 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47027 * 119.99425 * 21 19 17 24 24 H 1.48496 * 109.47069 * 239.99828 * 21 19 17 25 25 C 1.38864 * 119.85795 * 359.75314 * 8 7 6 26 26 C 1.38114 * 119.93329 * 359.97438 * 25 8 7 27 27 H 1.09008 * 109.46933 * 299.99908 * 1 2 3 28 28 H 1.09006 * 109.47459 * 59.99405 * 1 2 3 29 29 H 1.08995 * 109.47508 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46611 * 240.00101 * 2 1 3 31 31 H 1.08993 * 109.47174 * 120.00039 * 2 1 3 32 32 H 1.09000 * 109.47410 * 60.00590 * 3 2 1 33 33 H 1.09002 * 109.47072 * 299.99972 * 3 2 1 34 34 H 1.09008 * 109.46933 * 60.00092 * 4 3 2 35 35 H 1.09002 * 109.47239 * 299.99870 * 4 3 2 36 36 H 1.07999 * 119.96805 * 0.02562 * 6 5 4 37 37 H 1.08005 * 120.03893 * 180.25554 * 7 6 5 38 38 H 1.08995 * 109.47626 * 89.99755 * 10 9 8 39 39 H 1.09003 * 109.46503 * 209.99357 * 10 9 8 40 40 H 1.08997 * 109.47221 * 329.99310 * 10 9 8 41 41 H 1.09000 * 109.47166 * 300.00117 * 13 11 9 42 42 H 1.09000 * 109.47209 * 60.00345 * 13 11 9 43 43 H 1.09009 * 109.47139 * 300.00557 * 14 13 11 44 44 H 1.09000 * 109.47033 * 59.99939 * 14 13 11 45 45 H 1.09005 * 109.46660 * 300.00261 * 15 14 13 46 46 H 1.09000 * 109.47293 * 59.99791 * 15 14 13 47 47 H 1.09000 * 109.46832 * 299.99348 * 16 15 14 48 48 H 1.08997 * 109.47752 * 60.00038 * 16 15 14 49 49 H 0.96999 * 120.00363 * 180.02562 * 20 19 17 50 50 H 1.08005 * 120.03547 * 179.97438 * 25 8 7 51 51 H 1.07999 * 119.96880 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 6 4.3072 3.5116 -1.1999 7 6 4.7630 4.8153 -1.2038 8 6 4.9955 5.4716 -0.0022 9 7 5.4628 6.7906 -0.0029 10 6 4.6055 7.8716 0.4896 11 6 6.7016 7.0663 -0.4563 12 8 7.3754 6.1882 -0.9522 13 6 7.2497 8.4660 -0.3474 14 6 8.6631 8.5072 -0.9317 15 6 9.2198 9.9280 -0.8205 16 6 10.6329 9.9692 -1.4055 17 6 11.1814 11.3686 -1.2954 18 1 10.5818 12.1503 -0.8529 19 6 12.4486 11.6508 -1.7595 20 7 13.1790 10.6988 -2.2979 21 14 13.1283 13.3855 -1.6237 22 1 12.1163 14.2650 -0.9852 23 1 14.3628 13.3702 -0.7984 24 1 13.4458 13.9003 -2.9799 25 6 4.7637 4.8161 1.1998 26 6 4.3024 3.5142 1.1970 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 4.1300 2.9993 -2.1340 37 1 4.9424 5.3225 -2.1403 38 1 4.7691 8.0068 1.5587 39 1 4.8486 8.7957 -0.0349 40 1 3.5608 7.6167 0.3113 41 1 6.6079 9.1515 -0.9008 42 1 7.2807 8.7634 0.7008 43 1 9.3051 7.8214 -0.3787 44 1 8.6317 8.2098 -1.9799 45 1 8.5778 10.6139 -1.3734 46 1 9.2512 10.2249 0.2278 47 1 11.2750 9.2832 -0.8529 48 1 10.6011 9.6725 -2.4538 49 1 14.0706 10.8972 -2.6241 50 1 4.9439 5.3237 2.1359 51 1 4.1224 3.0037 2.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808481816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:01 Heat of formation + Delta-G solvation = -51.559178 kcal Electronic energy + Delta-G solvation = -25081.496000 eV Core-core repulsion = 21558.173601 eV Total energy + Delta-G solvation = -3523.322399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65116 -39.01308 -36.49380 -35.31489 -34.89807 -32.71065 -32.06171 -31.17521 -29.86222 -28.51344 -26.86644 -25.77840 -24.27667 -22.93621 -22.56179 -21.58030 -21.07125 -20.01082 -19.34004 -17.40483 -16.70644 -16.40739 -16.13865 -15.83082 -15.73046 -15.08371 -14.60626 -14.46102 -14.38170 -14.16709 -13.69734 -13.61427 -13.26995 -13.16867 -13.11533 -12.87819 -12.64175 -12.51381 -12.19917 -12.01282 -11.77039 -11.64993 -11.58194 -11.52859 -11.30485 -11.05758 -10.98769 -10.92895 -10.52973 -10.47597 -10.40018 -9.84177 -9.60458 -9.35533 -9.22037 -9.12856 -8.96629 -8.44888 -8.29695 -5.94183 -3.96699 1.03519 1.20878 2.63429 2.81232 3.33815 3.40975 3.44868 3.48434 4.33377 4.47033 4.49601 4.64225 4.65246 4.69922 4.78782 4.84830 4.85868 4.95493 5.10793 5.19272 5.25166 5.27867 5.28999 5.29883 5.36679 5.39812 5.41138 5.43214 5.46365 5.52272 5.60592 5.72752 5.79181 5.82966 5.87120 5.93820 6.06816 6.13756 6.27028 6.31809 6.39359 6.43001 6.55126 6.84472 6.89428 7.01401 7.17103 7.23295 7.75603 7.91326 8.07249 8.18317 8.49029 9.11240 9.67012 11.17162 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.040634 B = 0.001656 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.915522 B =16904.880021 C =17264.166682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.080 4.080 5 C -0.086 4.086 6 C -0.107 4.107 7 C -0.101 4.101 8 C 0.140 3.860 9 N -0.586 5.586 10 C 0.081 3.919 11 C 0.514 3.486 12 O -0.519 6.519 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.119 4.119 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.259 0.741 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.073 -17.942 7.406 34.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.126 4.126 7 C -0.121 4.121 8 C 0.050 3.950 9 N -0.318 5.318 10 C -0.062 4.062 11 C 0.304 3.696 12 O -0.393 6.393 13 C -0.174 4.174 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.139 4.139 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.508 -18.400 7.050 33.837 hybrid contribution 0.449 1.072 0.098 1.166 sum -27.059 -17.328 7.149 32.917 Atomic orbital electron populations 1.21778 0.95883 1.01563 1.01854 1.21554 0.95882 0.96823 1.02078 1.21609 0.94321 0.96740 1.02467 1.20622 0.95596 0.92543 1.03015 1.19893 0.99358 0.96257 0.93085 1.20903 0.99732 0.94220 0.97718 1.21248 0.98057 0.95228 0.97553 1.17588 0.99029 0.85189 0.93200 1.45585 1.15469 1.05559 1.65200 1.21875 0.94595 0.89869 0.99815 1.21301 0.79808 0.91950 0.76540 1.90728 1.57631 1.48825 1.42077 1.21835 0.99807 0.92087 1.03703 1.21481 0.92126 0.99392 1.01236 1.21645 0.99704 0.93101 1.00276 1.19104 0.89744 0.96809 0.96147 1.21323 0.99880 0.95361 1.39247 0.92693 1.25039 0.97132 0.96959 0.95415 1.69984 1.10402 1.32131 1.40920 0.86564 0.78947 0.84967 0.77675 1.19769 1.21057 1.21063 1.21189 1.00611 0.94868 0.97198 1.20857 1.00066 0.94186 0.97657 0.92771 0.92738 0.92819 0.91974 0.92004 0.91834 0.91806 0.90944 0.90983 0.85827 0.85944 0.92214 0.90030 0.90987 0.88977 0.88931 0.91776 0.91775 0.93458 0.93445 0.96573 0.96573 0.93111 0.85891 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.13 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.11 -0.66 5.20 -26.73 -0.14 -0.80 16 4 C -0.08 -0.54 5.34 -27.88 -0.15 -0.69 16 5 C -0.09 -0.77 5.14 -104.59 -0.54 -1.31 16 6 C -0.11 -1.08 9.69 -39.61 -0.38 -1.46 16 7 C -0.10 -1.22 9.31 -39.39 -0.37 -1.58 16 8 C 0.14 1.70 4.82 -83.69 -0.40 1.30 16 9 N -0.59 -6.96 2.93 -120.83 -0.35 -7.32 16 10 C 0.08 0.62 10.10 59.85 0.60 1.22 16 11 C 0.51 7.71 7.55 -10.99 -0.08 7.62 16 12 O -0.52 -9.98 15.54 5.56 0.09 -9.90 16 13 C -0.13 -1.84 4.38 -27.88 -0.12 -1.96 16 14 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.12 -1.24 9.85 -39.40 -0.39 -1.63 16 26 C -0.11 -1.00 9.69 -39.61 -0.38 -1.38 16 27 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.46 8.08 -51.92 -0.42 0.04 16 35 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.54 6.48 -51.93 -0.34 0.21 16 40 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16 41 H 0.09 1.06 7.24 -51.93 -0.38 0.68 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.25 8.10 -51.92 -0.42 0.83 16 44 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 417.00 15.07 6.28 6.28 Total: -1.00 -34.43 417.00 -10.76 -45.18 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -9.54 Total: -4.54 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.95 Total: -19.75 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.38 Total: -34.25 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.43 -10.76 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808481816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.375 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds