Wall clock time and date at job start Tue Mar 31 2020 11:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.53123 * 109.52268 * 294.87719 * 8 7 6 10 10 C 1.53045 * 109.27558 * 182.50013 * 9 8 7 11 11 N 1.46849 * 109.57654 * 59.08313 * 10 9 8 12 12 C 1.46896 * 111.00076 * 174.19387 * 11 10 9 13 13 C 1.52998 * 109.47176 * 314.20750 * 12 11 10 14 14 H 1.09005 * 109.47058 * 60.00470 * 13 12 11 15 15 O 1.42903 * 109.47172 * 300.00431 * 13 12 11 16 16 C 1.50697 * 109.47019 * 179.97438 * 13 12 11 17 17 H 1.07996 * 120.00225 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99637 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00512 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 119.99730 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.46909 * 90.00325 * 20 18 16 22 22 H 1.48504 * 109.46867 * 209.99938 * 20 18 16 23 23 H 1.48493 * 109.47216 * 329.99900 * 20 18 16 24 24 C 1.46853 * 111.19770 * 298.28907 * 11 10 9 25 25 C 1.53040 * 109.52155 * 61.74167 * 24 11 10 26 26 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 27 27 C 1.38234 * 120.00033 * 0.49775 * 26 5 4 28 28 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 29 29 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 30 30 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 31 31 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 34 34 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 35 35 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 36 36 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 37 37 H 1.09003 * 109.52230 * 54.99547 * 8 7 6 38 38 H 1.08997 * 109.50394 * 302.37619 * 9 8 7 39 39 H 1.09004 * 109.50404 * 62.49454 * 9 8 7 40 40 H 1.09003 * 109.40883 * 299.06984 * 10 9 8 41 41 H 1.09001 * 109.45514 * 179.12465 * 10 9 8 42 42 H 1.08999 * 109.47339 * 74.20647 * 12 11 10 43 43 H 1.09005 * 109.46975 * 194.20527 * 12 11 10 44 44 H 0.96703 * 113.99400 * 299.99432 * 15 13 12 45 45 H 0.96994 * 120.00396 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.46295 * 301.72809 * 24 11 10 47 47 H 1.08995 * 109.45603 * 181.75209 * 24 11 10 48 48 H 1.09004 * 109.50293 * 180.88257 * 25 24 11 49 49 H 1.08994 * 109.50632 * 60.76115 * 25 24 11 50 50 H 1.07999 * 119.99934 * 180.25938 * 26 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3341 -1.3100 0.8130 10 6 9.8634 -1.3304 0.8670 11 7 10.3081 -1.2138 2.2617 12 6 11.7654 -1.3681 2.3642 13 6 12.2115 -2.5678 1.5261 14 1 11.9358 -2.4056 0.4840 15 8 11.5720 -3.7508 2.0095 16 6 13.7065 -2.7256 1.6308 17 1 14.2810 -2.0392 2.2350 18 6 14.3408 -3.7470 0.9559 19 7 13.6412 -4.5833 0.2204 20 14 16.1940 -3.9431 1.0863 21 1 16.5183 -4.8320 2.2308 22 1 16.7180 -4.5404 -0.1683 23 1 16.8187 -2.6130 1.2999 24 6 9.8704 0.0566 2.8541 25 6 8.3413 0.1178 2.8609 26 6 3.5805 -1.1972 0.0010 27 6 2.1982 -1.1972 0.0009 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1400 -0.8891 -0.5270 34 1 6.1401 0.8909 -0.5236 35 1 5.9328 0.8863 1.9473 36 1 5.9327 -0.8937 1.9440 37 1 8.1858 0.8407 0.8357 38 1 7.9396 -2.1543 1.3784 39 1 8.0046 -1.3797 -0.2237 40 1 10.2575 -0.4944 0.2891 41 1 10.2291 -2.2672 0.4464 42 1 12.2531 -0.4657 1.9954 43 1 12.0411 -1.5301 3.4063 44 1 11.7729 -3.9572 2.9326 45 1 14.0874 -5.3021 -0.2540 46 1 10.2645 0.8861 2.2668 47 1 10.2412 0.1272 3.8766 48 1 8.0169 1.0675 3.2863 49 1 7.9468 -0.7033 3.4594 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809571520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:18 Heat of formation + Delta-G solvation = -70.126285 kcal Electronic energy + Delta-G solvation = -26136.417825 eV Core-core repulsion = 22612.290295 eV Total energy + Delta-G solvation = -3524.127529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57749 -40.06840 -37.86146 -36.13492 -34.28880 -34.11261 -31.87264 -31.76090 -31.37020 -29.78263 -27.80920 -26.19326 -24.58303 -24.40222 -23.56016 -22.54997 -21.59823 -21.25239 -20.51722 -19.12622 -17.06583 -16.69011 -16.66501 -16.53827 -16.25432 -16.02954 -15.87906 -15.53510 -15.28087 -15.00501 -14.84456 -14.51014 -14.26197 -14.25362 -14.16341 -13.83668 -13.38284 -13.26716 -13.06492 -12.97916 -12.92548 -12.78354 -12.65307 -12.47341 -12.36284 -12.10571 -12.03414 -11.96702 -11.87354 -11.63964 -11.43723 -11.22332 -11.03510 -10.81441 -10.60832 -10.05568 -9.78512 -9.29745 -9.09757 -8.13974 -6.39799 0.46990 0.54213 1.39803 1.39991 1.50969 2.37815 2.87051 3.09544 3.13388 3.74312 3.85090 3.91354 3.98425 4.05537 4.19410 4.20369 4.26035 4.28221 4.32226 4.40969 4.50247 4.55673 4.61080 4.63663 4.64270 4.68212 4.74090 4.78380 4.84757 4.86420 4.89788 4.98993 5.02121 5.03875 5.09368 5.16255 5.16810 5.25688 5.27264 5.31944 5.35325 5.43751 5.57770 5.58881 5.61863 5.75009 5.76263 5.81540 6.02507 6.19162 6.25307 6.39546 6.73343 7.33941 7.59805 8.90352 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.002049 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.385894 B =13663.659889 C =14201.053389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.094 4.094 6 C -0.080 4.080 7 C -0.092 4.092 8 C -0.080 4.080 9 C -0.100 4.100 10 C 0.055 3.945 11 N -0.535 5.535 12 C 0.046 3.954 13 C 0.232 3.768 14 H 0.026 0.974 15 O -0.569 6.569 16 C -0.590 4.590 17 H 0.057 0.943 18 C 0.026 3.974 19 N -0.898 5.898 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.266 1.266 24 C 0.051 3.949 25 C -0.102 4.102 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.016 0.984 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.068 0.932 44 H 0.353 0.647 45 H 0.261 0.739 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.123 0.877 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.803 12.947 1.325 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.099 4.099 9 C -0.138 4.138 10 C -0.073 4.073 11 N -0.260 5.260 12 C -0.082 4.082 13 C 0.174 3.826 14 H 0.044 0.956 15 O -0.372 6.372 16 C -0.628 4.628 17 H 0.076 0.924 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.785 3.215 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.077 4.077 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.148 4.148 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.082 0.918 50 H 0.141 0.859 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.267 12.423 0.854 27.275 hybrid contribution 2.039 0.158 -0.120 2.049 sum -22.228 12.580 0.735 25.552 Atomic orbital electron populations 1.20814 0.89704 1.03464 1.02874 1.20254 0.97380 0.93140 0.99780 1.21297 0.94255 0.98287 1.00782 1.21265 0.94566 0.97942 1.00421 1.20057 0.96075 0.93430 0.99803 1.20648 0.90288 1.03151 0.97624 1.21460 0.93359 1.02305 0.95859 1.21175 0.95429 0.96977 0.96317 1.21605 0.92813 0.98359 1.01014 1.22080 0.96886 0.99513 0.88793 1.61935 1.12020 1.34055 1.17981 1.22687 0.86842 0.98086 1.00611 1.19272 0.89829 0.81349 0.92113 0.95622 1.86486 1.73188 1.47184 1.30390 1.22064 0.94423 1.14834 1.31527 0.92434 1.25896 1.02889 0.95061 0.93806 1.70213 1.37234 1.16250 1.29833 0.85552 0.79729 0.78564 0.77676 1.19728 1.20838 1.19020 1.22200 0.97045 0.89094 0.99347 1.21582 0.93116 1.02508 0.96733 1.21259 0.94703 0.98081 1.00692 1.21271 0.94176 0.98411 1.00990 0.90613 0.91032 0.90702 0.84517 0.84951 0.91230 0.90507 0.91029 0.92405 0.91314 0.92277 0.90914 0.96535 0.92772 0.96098 0.91368 0.80265 0.92984 0.95686 0.90748 0.89608 0.91793 0.85930 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.11 -1.69 5.88 -19.86 -0.12 -1.81 16 3 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 4 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 5 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 6 C -0.08 -1.47 5.10 29.84 0.15 -1.32 16 7 C -0.09 -1.74 4.67 30.59 0.14 -1.60 16 8 C -0.08 -1.82 2.25 -10.71 -0.02 -1.84 16 9 C -0.10 -2.87 5.08 30.65 0.16 -2.71 16 10 C 0.06 2.05 4.85 86.33 0.42 2.47 16 11 N -0.54 -19.87 4.67 -896.32 -4.19 -24.06 16 12 C 0.05 1.96 4.87 86.30 0.42 2.38 16 13 C 0.23 12.13 2.12 29.85 0.06 12.19 16 14 H 0.03 1.51 6.21 -2.38 -0.01 1.50 16 15 O -0.57 -30.50 12.40 -148.98 -1.85 -32.34 16 16 C -0.59 -33.00 8.76 25.60 0.22 -32.78 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 18 C 0.03 1.47 5.40 84.66 0.46 1.93 16 19 N -0.90 -54.33 12.84 21.45 0.28 -54.05 16 20 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.05 1.48 5.42 86.33 0.47 1.95 16 25 C -0.10 -2.37 5.38 30.65 0.16 -2.20 16 26 C -0.13 -2.52 9.70 22.27 0.22 -2.30 16 27 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 30 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.07 1.37 6.58 -2.39 -0.02 1.35 16 34 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.90 6.70 -2.39 -0.02 1.88 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 2.46 5.66 -2.39 -0.01 2.45 16 42 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 43 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 44 H 0.35 17.08 9.04 -74.06 -0.67 16.41 16 45 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 48 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 49 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 51 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -65.91 398.85 0.48 -65.43 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.21 Total: 33.03 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 4.00 Total: -33.82 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.91 Total: -78.11 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.85 Total: -32.34 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.91 0.48 -65.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809571520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.696 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds