Wall clock time and date at job start Tue Mar 31 2020 11:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47050 * 239.99718 * 3 2 1 5 5 H 1.48501 * 109.46494 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47585 * 119.99368 * 3 2 1 7 7 C 1.38659 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00190 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99345 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99412 * 185.05569 * 9 7 2 11 11 C 1.38878 * 120.07082 * 354.46783 * 10 9 7 12 12 C 1.38095 * 119.92992 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06846 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92864 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.47564 * 89.99724 * 14 13 12 16 16 C 1.46894 * 111.00201 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47174 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47645 * 180.02562 * 17 16 15 19 19 C 1.54244 * 108.88959 * 296.39796 * 18 17 16 20 20 C 1.50561 * 108.48132 * 159.17447 * 19 18 17 21 21 C 1.54069 * 112.41296 * 94.26595 * 20 19 18 22 22 C 1.54069 * 112.81551 * 318.28075 * 21 20 19 23 23 C 1.50475 * 112.49691 * 318.28152 * 22 21 20 24 24 C 1.45541 * 108.89757 * 173.60838 * 18 17 16 25 25 C 1.38296 * 120.14191 * 0.24780 * 13 12 11 26 26 C 1.38107 * 120.06425 * 359.45484 * 25 13 12 27 27 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03207 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96498 * 179.97438 * 12 11 10 30 30 H 1.09006 * 109.47480 * 329.99641 * 14 13 12 31 31 H 1.08997 * 109.47163 * 209.99750 * 14 13 12 32 32 H 1.00902 * 110.99766 * 303.95529 * 15 14 13 33 33 H 1.09008 * 109.46835 * 60.00236 * 16 15 14 34 34 H 1.08997 * 109.47560 * 300.00124 * 16 15 14 35 35 H 1.09008 * 109.47037 * 60.00047 * 17 16 15 36 36 H 1.08997 * 109.47707 * 300.00372 * 17 16 15 37 37 H 1.08995 * 108.86871 * 54.99693 * 18 17 16 38 38 H 1.08996 * 109.62891 * 278.96851 * 19 18 17 39 39 H 1.09001 * 109.62890 * 39.55595 * 19 18 17 40 40 H 1.08998 * 108.92266 * 333.51267 * 20 19 18 41 41 H 1.08995 * 108.92042 * 215.01849 * 20 19 18 42 42 H 1.08997 * 108.81291 * 197.42033 * 21 20 19 43 43 H 1.08993 * 108.72468 * 79.08240 * 21 20 19 44 44 H 1.09002 * 108.87309 * 197.50950 * 22 21 20 45 45 H 1.08996 * 108.87826 * 79.06379 * 22 21 20 46 46 H 1.08999 * 109.63014 * 334.44733 * 23 22 21 47 47 H 1.08997 * 109.63190 * 213.86146 * 23 22 21 48 48 H 1.08994 * 108.89361 * 303.43694 * 24 18 17 49 49 H 1.08993 * 108.89241 * 62.03174 * 24 18 17 50 50 H 1.07996 * 119.97198 * 179.70817 * 25 13 12 51 51 H 1.08003 * 120.03373 * 180.26882 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0953 12 6 4.2025 -4.5969 0.2039 13 6 3.5686 -5.8203 0.3244 14 6 4.3849 -7.0816 0.4422 15 7 4.6563 -7.3588 1.8591 16 6 5.4514 -8.5844 2.0128 17 6 5.7137 -8.8391 3.4984 18 6 6.5423 -10.1153 3.6587 19 6 5.7202 -11.3129 3.1400 20 6 6.6673 -12.4378 2.8166 21 6 6.8285 -13.4251 3.9883 22 6 6.9371 -12.7195 5.3536 23 6 7.8101 -11.4951 5.3011 24 6 6.9133 -10.2639 5.0581 25 6 2.1874 -5.8891 0.3314 26 6 1.4366 -4.7345 0.2293 27 1 -0.4850 0.8400 -0.0004 28 1 3.9527 -2.4844 -0.0001 29 1 5.2813 -4.5469 0.1939 30 1 5.3276 -6.9555 -0.0904 31 1 3.8313 -7.9144 0.0087 32 1 5.1121 -6.5740 2.3002 33 1 6.4015 -8.4690 1.4910 34 1 4.9048 -9.4275 1.5903 35 1 4.7638 -8.9543 4.0206 36 1 6.2604 -7.9960 3.9207 37 1 7.4491 -10.0242 3.0608 38 1 5.0165 -11.6340 3.9079 39 1 5.1776 -11.0224 2.2404 40 1 7.6433 -12.0187 2.5718 41 1 6.2903 -12.9788 1.9488 42 1 7.7285 -14.0184 3.8267 43 1 5.9667 -14.0922 4.0048 44 1 7.3529 -13.4182 6.0796 45 1 5.9390 -12.4273 5.6799 46 1 8.5278 -11.5917 4.4865 47 1 8.3391 -11.3816 6.2473 48 1 7.4473 -9.3695 5.3786 49 1 6.0067 -10.3661 5.6546 50 1 1.6954 -6.8463 0.4210 51 1 0.3580 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809617567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:42 Heat of formation + Delta-G solvation = -36.538587 kcal Electronic energy + Delta-G solvation = -25438.019198 eV Core-core repulsion = 21915.348141 eV Total energy + Delta-G solvation = -3522.671058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.68982 -39.03737 -37.14947 -35.83598 -33.79715 -32.47649 -32.25624 -30.33688 -30.10482 -28.03169 -25.68096 -25.27448 -24.53308 -23.31284 -21.94114 -21.64254 -20.56932 -20.24088 -19.54873 -17.95894 -17.00874 -16.21959 -15.97829 -15.24067 -15.00476 -14.93375 -14.53907 -14.43545 -14.35073 -14.07201 -13.61529 -13.55605 -13.42536 -13.18011 -12.96429 -12.67983 -12.51119 -12.41924 -12.33782 -12.04447 -11.76120 -11.59806 -11.27719 -11.22114 -10.98141 -10.81416 -10.77036 -10.68720 -10.65944 -10.63936 -10.59472 -10.43140 -10.33488 -10.26305 -9.31827 -8.81988 -8.31742 -8.13874 -7.15828 -6.43508 -4.02448 2.25338 2.31473 3.13566 3.14673 3.17536 3.97671 4.11580 4.29465 4.42892 4.50813 4.70487 4.74451 4.84263 4.92589 4.96122 5.02783 5.10932 5.13548 5.15851 5.25524 5.31445 5.41812 5.43989 5.46308 5.48544 5.53256 5.66492 5.72320 5.75148 5.79576 5.82977 5.85284 5.85975 5.91042 5.93579 5.95371 6.00048 6.01722 6.11510 6.22323 6.24212 6.28716 6.45709 6.73716 6.92864 7.05259 7.14436 7.29449 7.38757 7.45845 7.53335 7.85964 8.01416 9.01970 9.72633 10.74463 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.001767 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.938640 B =15843.123224 C =16245.198923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.155 3.845 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.184 4.184 14 C 0.118 3.882 15 N -0.687 5.687 16 C 0.057 3.943 17 C -0.116 4.116 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.052 4.052 26 C -0.194 4.194 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.111 0.889 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.989 -22.729 7.535 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.185 4.185 14 C -0.010 4.010 15 N -0.318 5.318 16 C -0.072 4.072 17 C -0.154 4.154 18 C -0.101 4.101 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.071 4.071 26 C -0.214 4.214 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.129 0.871 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.945 -22.828 7.604 27.810 hybrid contribution 1.412 1.185 -0.299 1.867 sum 15.357 -21.642 7.305 27.524 Atomic orbital electron populations 1.70027 1.05942 1.27745 1.46055 1.25284 0.95837 0.98805 0.96583 0.85790 0.78701 0.79835 0.79147 1.19548 1.20275 1.19519 1.21270 0.91745 0.80872 1.52966 0.89169 1.83982 1.34337 1.11454 1.78377 1.19404 0.90281 0.88060 0.92091 1.21113 0.93833 0.98779 1.11673 1.20587 0.97993 0.91974 0.97968 1.19126 0.93714 0.93462 1.12236 1.20606 0.96897 0.95590 0.87879 1.60567 1.50431 1.05760 1.15029 1.22060 0.95251 0.93702 0.96236 1.21702 1.00570 0.96824 0.96274 1.20072 0.98389 0.94789 0.96888 1.21503 0.97885 0.94481 1.01445 1.21354 0.99937 0.96763 0.97591 1.21912 1.01311 0.97839 0.94382 1.21342 1.00333 0.97128 0.96848 1.21324 0.98050 0.94618 1.01474 1.20536 0.99709 0.98014 0.96804 1.20467 0.92851 0.96665 0.97132 1.20232 0.99578 0.90350 1.11210 0.91986 0.85668 0.87980 0.95617 0.91266 0.84167 0.95927 0.90937 0.91011 0.92225 0.91710 0.91633 0.91314 0.92221 0.92498 0.92608 0.92473 0.92678 0.92014 0.91751 0.92174 0.92340 0.92032 0.87069 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.23 -5.14 9.17 -39.40 -0.36 -5.51 16 12 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 13 C -0.18 -3.17 5.40 -104.58 -0.56 -3.74 16 14 C 0.12 1.63 5.81 -4.98 -0.03 1.60 16 15 N -0.69 -8.74 6.49 -115.06 -0.75 -9.49 16 16 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 17 C -0.12 -1.03 4.86 -26.73 -0.13 -1.16 16 18 C -0.08 -0.61 1.71 -93.48 -0.16 -0.77 16 19 C -0.12 -0.85 4.91 -27.30 -0.13 -0.98 16 20 C -0.12 -0.79 5.32 -27.39 -0.15 -0.93 16 21 C -0.12 -0.72 5.85 -25.62 -0.15 -0.87 16 22 C -0.12 -0.74 5.31 -27.43 -0.15 -0.88 16 23 C -0.12 -0.74 5.61 -27.34 -0.15 -0.90 16 24 C -0.11 -0.80 4.44 -29.60 -0.13 -0.93 16 25 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 26 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.34 4.37 8.72 -39.29 -0.34 4.02 16 33 H 0.02 0.23 8.14 -51.92 -0.42 -0.20 16 34 H 0.07 0.73 6.14 -51.93 -0.32 0.41 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 38 H 0.06 0.50 6.97 -51.93 -0.36 0.14 16 39 H 0.07 0.53 5.82 -51.93 -0.30 0.23 16 40 H 0.06 0.40 6.63 -51.93 -0.34 0.06 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.41 6.62 -51.93 -0.34 0.06 16 46 H 0.06 0.42 6.98 -51.93 -0.36 0.06 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 49 H 0.06 0.45 7.46 -51.93 -0.39 0.07 16 50 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 51 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -29.71 391.04 -11.23 -40.93 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.76 Total: 5.19 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -3.35 Total: -28.28 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.01 Total: -34.18 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.71 -11.23 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809617567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.396 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds