Wall clock time and date at job start Tue Mar 31 2020 11:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47050 * 239.99718 * 3 2 1 5 5 H 1.48501 * 109.46494 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47585 * 119.99368 * 3 2 1 7 7 C 1.38659 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00190 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99345 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99412 * 185.05569 * 9 7 2 11 11 C 1.38878 * 120.07082 * 354.46783 * 10 9 7 12 12 C 1.38095 * 119.92992 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.06846 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92864 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.47564 * 89.99724 * 14 13 12 16 16 C 1.46894 * 111.00201 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47174 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47645 * 180.02562 * 17 16 15 19 19 C 1.54244 * 108.88959 * 296.39796 * 18 17 16 20 20 C 1.50561 * 108.48132 * 159.17447 * 19 18 17 21 21 C 1.54069 * 112.41296 * 94.26595 * 20 19 18 22 22 C 1.54069 * 112.81551 * 318.28075 * 21 20 19 23 23 C 1.50475 * 112.49691 * 318.28152 * 22 21 20 24 24 C 1.45541 * 108.89757 * 173.60838 * 18 17 16 25 25 C 1.38296 * 120.14191 * 0.24780 * 13 12 11 26 26 C 1.38107 * 120.06425 * 359.45484 * 25 13 12 27 27 H 0.97000 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03207 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96498 * 179.97438 * 12 11 10 30 30 H 1.09006 * 109.47480 * 329.99641 * 14 13 12 31 31 H 1.08997 * 109.47163 * 209.99750 * 14 13 12 32 32 H 1.00902 * 110.99766 * 303.95529 * 15 14 13 33 33 H 1.09008 * 109.46835 * 60.00236 * 16 15 14 34 34 H 1.08997 * 109.47560 * 300.00124 * 16 15 14 35 35 H 1.09008 * 109.47037 * 60.00047 * 17 16 15 36 36 H 1.08997 * 109.47707 * 300.00372 * 17 16 15 37 37 H 1.08995 * 108.86871 * 54.99693 * 18 17 16 38 38 H 1.08996 * 109.62891 * 278.96851 * 19 18 17 39 39 H 1.09001 * 109.62890 * 39.55595 * 19 18 17 40 40 H 1.08998 * 108.92266 * 333.51267 * 20 19 18 41 41 H 1.08995 * 108.92042 * 215.01849 * 20 19 18 42 42 H 1.08997 * 108.81291 * 197.42033 * 21 20 19 43 43 H 1.08993 * 108.72468 * 79.08240 * 21 20 19 44 44 H 1.09002 * 108.87309 * 197.50950 * 22 21 20 45 45 H 1.08996 * 108.87826 * 79.06379 * 22 21 20 46 46 H 1.08999 * 109.63014 * 334.44733 * 23 22 21 47 47 H 1.08997 * 109.63190 * 213.86146 * 23 22 21 48 48 H 1.08994 * 108.89361 * 303.43694 * 24 18 17 49 49 H 1.08993 * 108.89241 * 62.03174 * 24 18 17 50 50 H 1.07996 * 119.97198 * 179.70817 * 25 13 12 51 51 H 1.08003 * 120.03373 * 180.26882 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6966 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0953 12 6 4.2025 -4.5969 0.2039 13 6 3.5686 -5.8203 0.3244 14 6 4.3849 -7.0816 0.4422 15 7 4.6563 -7.3588 1.8591 16 6 5.4514 -8.5844 2.0128 17 6 5.7137 -8.8391 3.4984 18 6 6.5423 -10.1153 3.6587 19 6 5.7202 -11.3129 3.1400 20 6 6.6673 -12.4378 2.8166 21 6 6.8285 -13.4251 3.9883 22 6 6.9371 -12.7195 5.3536 23 6 7.8101 -11.4951 5.3011 24 6 6.9133 -10.2639 5.0581 25 6 2.1874 -5.8891 0.3314 26 6 1.4366 -4.7345 0.2293 27 1 -0.4850 0.8400 -0.0004 28 1 3.9527 -2.4844 -0.0001 29 1 5.2813 -4.5469 0.1939 30 1 5.3276 -6.9555 -0.0904 31 1 3.8313 -7.9144 0.0087 32 1 5.1121 -6.5740 2.3002 33 1 6.4015 -8.4690 1.4910 34 1 4.9048 -9.4275 1.5903 35 1 4.7638 -8.9543 4.0206 36 1 6.2604 -7.9960 3.9207 37 1 7.4491 -10.0242 3.0608 38 1 5.0165 -11.6340 3.9079 39 1 5.1776 -11.0224 2.2404 40 1 7.6433 -12.0187 2.5718 41 1 6.2903 -12.9788 1.9488 42 1 7.7285 -14.0184 3.8267 43 1 5.9667 -14.0922 4.0048 44 1 7.3529 -13.4182 6.0796 45 1 5.9390 -12.4273 5.6799 46 1 8.5278 -11.5917 4.4865 47 1 8.3391 -11.3816 6.2473 48 1 7.4473 -9.3695 5.3786 49 1 6.0067 -10.3661 5.6546 50 1 1.6954 -6.8463 0.4210 51 1 0.3580 -4.7884 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809617567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:41 Heat of formation + Delta-G solvation = -52.046436 kcal Electronic energy + Delta-G solvation = -25438.691669 eV Core-core repulsion = 21915.348141 eV Total energy + Delta-G solvation = -3523.343528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79170 -40.25193 -38.67728 -36.94904 -34.67589 -34.17851 -32.99899 -31.79964 -31.50896 -29.08404 -27.44994 -26.07189 -25.46401 -24.25700 -23.59940 -22.40568 -21.91674 -21.03643 -20.06453 -19.83342 -18.84983 -17.04772 -16.76918 -16.45745 -16.32789 -16.09308 -15.71220 -15.55260 -15.43310 -15.26665 -15.13469 -14.84945 -14.41481 -14.26422 -13.94076 -13.73291 -13.70846 -13.55306 -13.27706 -12.99367 -12.93863 -12.81966 -12.52856 -12.36626 -12.32437 -12.16379 -12.04897 -11.88694 -11.49970 -11.35222 -11.22548 -11.16959 -11.16189 -11.02220 -10.88001 -10.77475 -9.76931 -9.30407 -8.89063 -8.46408 -6.14805 0.61345 0.68806 1.34834 1.45716 1.51340 2.18230 2.79295 3.11221 3.44721 3.53603 3.73011 3.83753 3.96952 4.04369 4.07833 4.19288 4.22115 4.24661 4.34987 4.41599 4.45117 4.47881 4.52618 4.58914 4.62998 4.65698 4.75137 4.77724 4.82933 4.92269 4.97865 5.08139 5.10353 5.15064 5.16287 5.18253 5.26277 5.31403 5.33336 5.36095 5.40509 5.40945 5.44198 5.56448 5.58652 5.65198 5.67669 5.72108 5.82684 6.03344 6.15357 6.26983 6.50890 6.97986 7.79289 8.76619 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030298 B = 0.001767 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.938640 B =15843.123224 C =16245.198923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.063 4.063 13 C -0.158 4.158 14 C 0.122 3.878 15 N -0.697 5.697 16 C 0.061 3.939 17 C -0.110 4.110 18 C -0.075 4.075 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.049 4.049 26 C -0.207 4.207 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.340 0.660 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.143 0.857 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.929 -24.744 7.813 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.081 4.081 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.328 5.328 16 C -0.068 4.068 17 C -0.148 4.148 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.067 4.067 26 C -0.226 4.226 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.161 0.839 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.921 -24.909 7.887 31.128 hybrid contribution 0.616 1.433 -0.341 1.597 sum 17.537 -23.476 7.546 30.259 Atomic orbital electron populations 1.70180 1.08032 1.28839 1.48851 1.26607 0.96867 1.02768 0.95878 0.84647 0.77387 0.74250 0.79912 1.18131 1.19616 1.18186 1.21782 0.92504 0.81465 1.53311 0.88127 1.83945 1.35992 1.12618 1.81473 1.19948 0.91683 0.87915 0.94180 1.21231 0.93033 1.00037 1.11934 1.20950 0.99658 0.91016 0.96520 1.19641 0.93647 0.94778 1.07798 1.20600 0.97182 0.93805 0.88998 1.60523 1.51559 1.06664 1.14098 1.22079 0.95250 0.92489 0.96955 1.21644 1.00217 0.97499 0.95452 1.20009 0.98134 0.94106 0.97145 1.21472 0.97875 0.94647 1.01077 1.21337 0.99734 0.96612 0.97840 1.21912 1.01581 0.97779 0.94162 1.21338 1.00028 0.97219 0.97050 1.21303 0.97902 0.94242 1.01752 1.20520 0.99643 0.98390 0.96463 1.20847 0.93512 0.96673 0.95664 1.20475 0.99913 0.90679 1.11531 0.91858 0.86380 0.84427 0.93891 0.89894 0.84211 0.95090 0.90523 0.92136 0.92357 0.91500 0.92124 0.91616 0.92147 0.92282 0.92124 0.92452 0.92147 0.92570 0.91670 0.91727 0.92423 0.92548 0.83914 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.20 13.67 21.61 0.30 -56.90 16 2 C -0.02 -1.37 5.49 84.84 0.47 -0.90 16 3 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.35 9.76 -22.82 -0.22 -14.57 16 10 C 0.11 5.75 6.65 22.58 0.15 5.90 16 11 C -0.24 -10.70 9.17 22.39 0.21 -10.49 16 12 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 13 C -0.16 -4.93 5.40 -19.83 -0.11 -5.03 16 14 C 0.12 2.83 5.81 85.56 0.50 3.32 16 15 N -0.70 -15.22 6.49 -517.94 -3.36 -18.58 16 16 C 0.06 1.02 5.46 86.30 0.47 1.49 16 17 C -0.11 -1.70 4.86 30.59 0.15 -1.55 16 18 C -0.07 -0.95 1.71 -12.65 -0.02 -0.97 16 19 C -0.11 -1.42 4.91 30.23 0.15 -1.27 16 20 C -0.12 -1.31 5.32 30.17 0.16 -1.15 16 21 C -0.12 -1.22 5.85 31.32 0.18 -1.04 16 22 C -0.12 -1.27 5.31 30.14 0.16 -1.11 16 23 C -0.11 -1.24 5.61 30.20 0.17 -1.07 16 24 C -0.11 -1.39 4.44 28.74 0.13 -1.26 16 25 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 26 C -0.21 -9.07 9.99 22.39 0.22 -8.84 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.04 0.89 8.08 -2.38 -0.02 0.87 16 31 H 0.08 1.76 8.08 -2.39 -0.02 1.75 16 32 H 0.34 7.55 8.72 -89.69 -0.78 6.77 16 33 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.08 1.26 6.14 -2.39 -0.01 1.25 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 36 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 37 H 0.07 0.85 7.46 -2.39 -0.02 0.83 16 38 H 0.06 0.82 6.97 -2.39 -0.02 0.81 16 39 H 0.07 0.86 5.82 -2.39 -0.01 0.85 16 40 H 0.06 0.67 6.63 -2.39 -0.02 0.65 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.66 6.62 -2.39 -0.02 0.65 16 46 H 0.06 0.70 6.98 -2.39 -0.02 0.69 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.72 8.04 -2.39 -0.02 0.70 16 49 H 0.06 0.76 7.46 -2.39 -0.02 0.74 16 50 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 51 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -68.41 391.04 2.92 -65.49 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.12 Total: 30.55 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 4.06 Total: -51.22 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -3.07 Total: -75.48 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.41 2.92 -65.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809617567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.447 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds