Wall clock time and date at job start Tue Mar 31 2020 11:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38284 * 119.93074 * 90.00383 * 3 2 1 5 5 C 1.38105 * 120.07500 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92784 * 359.97438 * 5 4 3 7 7 N 1.39923 * 120.06950 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00127 * 8.41128 * 7 6 5 9 9 O 1.21285 * 120.00170 * 5.97181 * 8 7 6 10 10 C 1.50702 * 120.00081 * 185.96582 * 8 7 6 11 11 C 1.52997 * 109.47371 * 184.91477 * 10 8 7 12 12 C 1.52999 * 109.47429 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47429 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47227 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00426 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00012 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00217 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46994 * 60.00054 * 18 16 14 20 20 H 1.48497 * 109.47220 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46925 * 300.00106 * 18 16 14 22 22 C 1.46500 * 120.00042 * 188.13904 * 7 6 5 23 23 C 1.53007 * 109.47190 * 294.06049 * 22 7 6 24 24 C 1.53008 * 109.47171 * 54.05726 * 22 7 6 25 25 C 1.38878 * 119.85804 * 0.24800 * 6 5 4 26 26 C 1.38112 * 119.92590 * 359.52281 * 25 6 5 27 27 H 1.08999 * 109.47172 * 299.99432 * 1 2 3 28 28 H 1.09001 * 109.47519 * 59.99798 * 1 2 3 29 29 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47172 * 240.00568 * 2 1 3 31 31 H 1.09001 * 109.47519 * 120.00202 * 2 1 3 32 32 H 1.08007 * 119.96156 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.03728 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47271 * 304.91820 * 10 8 7 35 35 H 1.09005 * 109.47055 * 64.91471 * 10 8 7 36 36 H 1.08995 * 109.47203 * 300.00385 * 11 10 8 37 37 H 1.09005 * 109.47036 * 59.99982 * 11 10 8 38 38 H 1.09003 * 109.46947 * 299.99901 * 12 11 10 39 39 H 1.09000 * 109.47111 * 60.00309 * 12 11 10 40 40 H 1.09001 * 109.47497 * 300.00437 * 13 12 11 41 41 H 1.09005 * 109.47036 * 59.99726 * 13 12 11 42 42 H 0.96994 * 119.99815 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.47378 * 174.06100 * 22 7 6 44 44 H 1.08998 * 109.46879 * 53.99912 * 23 22 7 45 45 H 1.09001 * 109.47472 * 173.99683 * 23 22 7 46 46 H 1.08995 * 109.47026 * 294.00409 * 23 22 7 47 47 H 1.08999 * 109.47035 * 65.50213 * 24 22 7 48 48 H 1.08998 * 109.47254 * 185.50019 * 24 22 7 49 49 H 1.08998 * 109.46890 * 305.50336 * 24 22 7 50 50 H 1.07997 * 120.03525 * 179.74743 * 25 6 5 51 51 H 1.08002 * 119.95990 * 180.22888 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7221 3.3736 1.2019 6 6 2.9540 4.0297 0.0001 7 7 3.4193 5.3493 0.0001 8 6 3.8040 5.9282 1.1548 9 8 3.8501 5.2741 2.1752 10 6 4.1771 7.3881 1.1782 11 6 4.6891 7.7615 2.5707 12 6 5.0673 9.2438 2.5946 13 6 5.5799 9.6170 3.9870 14 6 5.9530 11.0769 4.0103 15 1 5.8358 11.6785 3.1211 16 6 6.4430 11.6448 5.1672 17 7 6.5853 10.9123 6.2503 18 14 6.9048 13.4546 5.1964 19 1 5.7107 14.2754 4.8717 20 1 7.4024 13.8168 6.5478 21 1 7.9689 13.7101 4.1927 22 6 3.4940 6.0998 -1.2558 23 6 4.5413 5.4608 -2.1702 24 6 2.1294 6.0739 -1.9474 25 6 2.7176 3.3753 -1.2018 26 6 2.2623 2.0713 -1.1983 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0822 1.5604 2.1328 33 1 2.9012 3.8812 2.1382 34 1 4.9583 7.5753 0.4416 35 1 3.3008 7.9909 0.9396 36 1 3.9079 7.5743 3.3074 37 1 5.5654 7.1587 2.8094 38 1 5.8485 9.4314 1.8579 39 1 4.1908 9.8463 2.3563 40 1 4.7992 9.4293 4.7241 41 1 6.4566 9.0145 4.2250 42 1 6.9296 11.3120 7.0642 43 1 3.7757 7.1316 -1.0464 44 1 4.3178 4.4012 -2.2936 45 1 4.5222 5.9518 -3.1432 46 1 5.5298 5.5742 -1.7253 47 1 1.4039 6.6149 -1.3399 48 1 2.2089 6.5473 -2.9259 49 1 1.8032 5.0410 -2.0689 50 1 2.8930 3.8841 -2.1380 51 1 2.0818 1.5606 -2.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813260160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:28 Heat of formation + Delta-G solvation = -19.045507 kcal Electronic energy + Delta-G solvation = -26319.591094 eV Core-core repulsion = 22797.678593 eV Total energy + Delta-G solvation = -3521.912501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28114 -38.88133 -37.21936 -35.09690 -33.97222 -32.62099 -32.31033 -30.72465 -30.16602 -28.57786 -27.58946 -25.79994 -24.09283 -23.09765 -22.53413 -22.02287 -21.05036 -20.04167 -19.40321 -17.31989 -16.89011 -16.23943 -16.13917 -15.98916 -15.04415 -14.95035 -14.52873 -14.48173 -14.22644 -13.89629 -13.80997 -13.56963 -13.43088 -13.27488 -13.13564 -12.77193 -12.57292 -12.35509 -12.23855 -11.99970 -11.78211 -11.70281 -11.66738 -11.58014 -11.34939 -11.21961 -10.98808 -10.58481 -10.55328 -10.51805 -10.37956 -10.18554 -9.63071 -9.45200 -9.19825 -9.00460 -8.95230 -8.30690 -7.87752 -5.95537 -3.98231 1.17999 1.35062 2.54450 2.62248 3.34919 3.39423 3.41493 3.72572 4.29276 4.38450 4.48874 4.60381 4.67411 4.67847 4.81993 4.89111 4.96859 5.10815 5.13567 5.20590 5.22924 5.28055 5.30019 5.32940 5.39635 5.40614 5.44167 5.49885 5.55281 5.63366 5.73793 5.78008 5.85459 5.88787 5.92949 5.98345 6.08514 6.18889 6.25447 6.31133 6.47373 6.52359 6.59422 6.80078 6.97264 7.08051 7.16381 7.22310 7.72951 7.88759 8.03546 8.05705 8.47044 9.09177 9.65326 11.15701 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.002205 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.298065 B =12694.594895 C =13604.308725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.115 4.115 4 C -0.094 4.094 5 C -0.160 4.160 6 C 0.159 3.841 7 N -0.553 5.553 8 C 0.513 3.487 9 O -0.508 6.508 10 C -0.138 4.138 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.122 3.878 23 C -0.181 4.181 24 C -0.181 4.181 25 C -0.174 4.174 26 C -0.099 4.099 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.141 0.859 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 -19.179 -20.622 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.113 4.113 5 C -0.180 4.180 6 C 0.064 3.936 7 N -0.277 5.277 8 C 0.305 3.695 9 O -0.383 6.383 10 C -0.178 4.178 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.019 3.981 23 C -0.239 4.239 24 C -0.239 4.239 25 C -0.194 4.194 26 C -0.117 4.117 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.191 0.809 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.158 0.842 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.019 -19.407 -19.871 29.881 hybrid contribution 0.300 1.051 -0.072 1.096 sum -10.719 -18.355 -19.943 29.147 Atomic orbital electron populations 1.21751 0.95005 1.01417 1.02184 1.20476 0.95952 0.92897 1.02495 1.19848 1.01910 0.96498 0.93318 1.21019 0.98331 0.94559 0.97362 1.22462 1.00267 0.95389 0.99849 1.17952 0.96998 0.84122 0.94478 1.45876 1.61553 1.11475 1.08747 1.21347 0.75577 0.90727 0.81898 1.90439 1.50644 1.63975 1.33279 1.21889 1.02983 0.90447 1.02444 1.21488 1.01406 0.98408 0.92910 1.21647 0.99649 0.92211 1.01244 1.19087 0.96243 0.95995 0.90351 1.21235 1.42681 0.95317 0.96716 0.92809 1.25048 0.95886 0.97893 0.95762 1.69965 1.46136 1.35854 1.01467 0.86665 0.78805 0.85527 0.77023 1.20288 1.21314 1.20299 1.21405 0.96708 0.96772 0.83226 1.22494 0.99107 1.02618 0.99653 1.22483 0.96210 1.04214 1.00989 1.21272 1.05532 0.95613 0.96970 1.20746 0.99612 0.93985 0.97398 0.92555 0.92704 0.92648 0.91417 0.91276 0.86121 0.80916 0.88955 0.88615 0.91535 0.91754 0.93449 0.93418 0.96570 0.96592 0.92976 0.87637 0.90677 0.90806 0.91757 0.91825 0.90838 0.90375 0.84173 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.11 -1.14 5.14 -104.59 -0.54 -1.68 16 4 C -0.09 -1.09 9.69 -39.61 -0.38 -1.47 16 5 C -0.16 -2.19 8.96 -39.40 -0.35 -2.54 16 6 C 0.16 1.96 6.06 -83.69 -0.51 1.46 16 7 N -0.55 -6.50 2.62 -106.38 -0.28 -6.78 16 8 C 0.51 7.33 7.56 -10.99 -0.08 7.24 16 9 O -0.51 -8.89 12.51 5.55 0.07 -8.82 16 10 C -0.14 -1.81 4.10 -27.88 -0.11 -1.93 16 11 C -0.10 -1.82 4.52 -26.73 -0.12 -1.94 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.12 1.02 3.04 -67.92 -0.21 0.81 16 23 C -0.18 -1.31 9.06 37.16 0.34 -0.97 16 24 C -0.18 -1.28 8.93 37.16 0.33 -0.94 16 25 C -0.17 -1.73 6.66 -39.39 -0.26 -1.99 16 26 C -0.10 -0.92 9.69 -39.61 -0.38 -1.31 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.17 2.74 4.76 -54.96 -0.26 2.48 16 34 H 0.09 1.03 7.37 -51.93 -0.38 0.65 16 35 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.11 0.80 5.78 -51.93 -0.30 0.50 16 44 H 0.07 0.56 4.82 -51.93 -0.25 0.31 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.58 4.59 -51.93 -0.24 0.34 16 50 H 0.14 1.10 3.58 -52.49 -0.19 0.91 16 51 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -32.92 396.40 -10.05 -42.97 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.76 Total: -1.05 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.77 Total: -22.42 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.46 Total: -33.52 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.92 -10.05 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813260160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.927 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds