Wall clock time and date at job start Tue Mar 31 2020 11:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00089 * 2 1 4 4 C 1.38212 * 119.99991 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00241 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00144 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47425 * 264.99820 * 6 5 4 8 8 C 1.50693 * 109.47425 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00208 * 354.69830 * 8 7 6 10 10 N 1.34774 * 120.00247 * 174.69309 * 8 7 6 11 11 C 1.46503 * 120.00011 * 185.40150 * 10 8 7 12 12 C 1.50708 * 109.46861 * 90.00766 * 11 10 8 13 13 H 1.08000 * 119.99520 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00025 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99813 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46994 * 90.00386 * 16 14 12 18 18 H 1.48502 * 109.46730 * 209.99950 * 16 14 12 19 19 H 1.48496 * 109.47014 * 329.99863 * 16 14 12 20 20 C 1.46503 * 120.00126 * 5.41205 * 10 8 7 21 21 C 1.52995 * 109.47256 * 96.68191 * 20 10 8 22 22 C 1.53002 * 109.46823 * 174.11471 * 21 20 10 23 23 C 1.53006 * 109.47314 * 294.10799 * 21 20 10 24 24 C 1.38220 * 119.99498 * 0.25320 * 5 4 3 25 25 C 1.50703 * 119.99665 * 179.72501 * 24 5 4 26 26 C 1.38216 * 119.99846 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47306 * 90.00063 * 1 2 3 28 28 H 1.09006 * 109.47296 * 210.00134 * 1 2 3 29 29 H 1.09000 * 109.47617 * 329.99929 * 1 2 3 30 30 H 1.07993 * 120.00124 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00125 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47129 * 144.99816 * 6 5 4 33 33 H 1.08996 * 109.47350 * 25.00138 * 6 5 4 34 34 H 1.08996 * 109.47116 * 300.00461 * 7 6 5 35 35 H 1.09003 * 109.46970 * 59.99899 * 7 6 5 36 36 H 1.08999 * 109.47246 * 210.00003 * 11 10 8 37 37 H 1.08994 * 109.47518 * 330.00852 * 11 10 8 38 38 H 0.97000 * 120.00088 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.46883 * 216.68524 * 20 10 8 40 40 H 1.09000 * 109.46754 * 336.68068 * 20 10 8 41 41 H 1.08997 * 109.47358 * 54.10911 * 21 20 10 42 42 H 1.08997 * 109.47611 * 59.99595 * 22 21 20 43 43 H 1.09003 * 109.46640 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.46790 * 299.99263 * 22 21 20 45 45 H 1.09004 * 109.46654 * 64.70849 * 23 21 20 46 46 H 1.08994 * 109.47562 * 184.70960 * 23 21 20 47 47 H 1.09001 * 109.47185 * 304.71729 * 23 21 20 48 48 H 1.09006 * 109.46954 * 89.99634 * 25 24 5 49 49 H 1.09001 * 109.46927 * 209.99736 * 25 24 5 50 50 H 1.08995 * 109.46901 * 330.00219 * 25 24 5 51 51 H 1.08001 * 120.00129 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7786 0.0000 0.0005 7 6 6.2887 -0.1258 -1.4364 8 6 7.7956 -0.1264 -1.4364 9 8 8.4021 0.0610 -0.4029 10 7 8.4695 -0.3354 -2.5847 11 6 9.9296 -0.4540 -2.5660 12 6 10.3138 -1.8984 -2.3726 13 1 9.5470 -2.6524 -2.2732 14 6 11.6441 -2.2572 -2.3227 15 7 12.5778 -1.3391 -2.4443 16 14 12.1202 -4.0475 -2.0823 17 1 12.2484 -4.7076 -3.4063 18 1 13.4178 -4.1223 -1.3642 19 1 11.0729 -4.7354 -1.2854 20 6 7.7420 -0.4437 -3.8517 21 6 7.7513 0.9110 -4.5626 22 6 7.1211 0.7637 -5.9490 23 6 6.9486 1.9230 -3.7425 24 6 3.5805 -1.1970 -0.0053 25 6 4.3341 -2.5021 -0.0116 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 6.1420 -0.8419 0.5900 33 1 6.1420 0.9313 0.4348 34 1 5.9253 -1.0571 -1.8707 35 1 5.9254 0.7160 -2.0259 36 1 10.3356 -0.0936 -3.5111 37 1 10.3321 0.1417 -1.7468 38 1 13.5137 -1.5915 -2.4096 39 1 8.2233 -1.1895 -4.4843 40 1 6.7127 -0.7438 -3.6550 41 1 8.7787 1.2601 -4.6657 42 1 6.0937 0.4145 -5.8459 43 1 7.1282 1.7288 -6.4556 44 1 7.6929 0.0428 -6.5333 45 1 7.4445 2.0906 -2.7863 46 1 6.8847 2.8641 -4.2885 47 1 5.9450 1.5350 -3.5681 48 1 4.5157 -2.8217 1.0147 49 1 3.7450 -3.2593 -0.5291 50 1 5.2865 -2.3693 -0.5246 51 1 1.6580 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813278507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:56 Heat of formation + Delta-G solvation = -46.636803 kcal Electronic energy + Delta-G solvation = -27180.375385 eV Core-core repulsion = 23657.266436 eV Total energy + Delta-G solvation = -3523.108949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94517 -39.08435 -36.30939 -34.84530 -33.62899 -32.43180 -32.24480 -31.16995 -28.06697 -27.22989 -27.05822 -26.60995 -25.43693 -23.77271 -22.28010 -21.82454 -20.18654 -19.96911 -18.11041 -16.70769 -16.47774 -16.07717 -15.56710 -15.33126 -14.95244 -14.78892 -14.44375 -14.22820 -14.04785 -13.63804 -13.42270 -13.23739 -13.13568 -12.84738 -12.68330 -12.46665 -12.40843 -12.24460 -12.07854 -12.01165 -11.77671 -11.64127 -11.42595 -11.18636 -11.11665 -10.95888 -10.89634 -10.77934 -10.70093 -10.58487 -10.47101 -10.32863 -10.10633 -9.58662 -8.88204 -8.76558 -8.42242 -8.37344 -7.58144 -6.02751 -4.07507 1.29468 1.35966 3.30251 3.36880 3.40201 3.49432 3.64752 4.01988 4.45736 4.68251 4.72560 4.87009 4.92332 5.08143 5.10275 5.16152 5.19980 5.27537 5.31318 5.36159 5.36584 5.38699 5.48856 5.55633 5.62802 5.65016 5.65619 5.70275 5.74947 5.78008 5.88165 5.93121 5.94669 6.06235 6.09066 6.10548 6.21594 6.25103 6.29718 6.40894 6.46074 6.50013 6.52419 6.59222 6.73279 7.01202 7.11944 7.49499 7.59976 7.94414 8.26241 8.49068 8.92586 9.15530 9.57755 11.05198 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003410 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.114005 B = 8208.838667 C = 9316.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.066 4.066 7 C -0.144 4.144 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.596 5.596 11 C 0.246 3.754 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.116 3.884 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.076 4.076 25 C -0.123 4.123 26 C -0.121 4.121 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 3.885 -1.034 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.104 4.104 7 C -0.183 4.183 8 C 0.294 3.706 9 O -0.424 6.424 10 N -0.327 5.327 11 C 0.127 3.873 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.009 4.009 21 C -0.136 4.136 22 C -0.200 4.200 23 C -0.205 4.205 24 C -0.076 4.076 25 C -0.179 4.179 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.738 3.998 -0.490 22.108 hybrid contribution 0.366 -0.986 -0.031 1.052 sum -21.372 3.012 -0.521 21.589 Atomic orbital electron populations 1.20758 0.91518 1.02482 1.02095 1.19844 0.95788 0.93248 1.00524 1.20954 0.94153 0.97293 1.02036 1.21060 0.94008 0.97651 1.00017 1.19871 0.95858 0.92541 0.99745 1.20346 0.89357 1.04382 0.96329 1.21926 0.94132 1.04028 0.98263 1.20308 0.89069 0.77262 0.83915 1.90658 1.70328 1.49668 1.31708 1.48181 1.09759 1.69513 1.05283 1.19234 0.72781 0.97187 0.98113 1.21446 0.91888 0.93129 1.49970 0.92533 1.24931 0.96343 0.97654 0.95172 1.69935 1.00337 1.32860 1.50240 0.86521 0.77983 0.84927 0.78136 1.20672 1.21113 1.19902 1.21531 0.96577 0.96329 0.86453 1.21556 1.00648 0.96496 0.94900 1.21761 1.00476 1.01526 0.96236 1.21965 0.99497 0.98605 1.00418 1.19810 0.93486 0.95083 0.99208 1.20913 1.00560 0.93782 1.02640 1.20869 0.93448 0.97393 1.02186 0.91397 0.91784 0.91768 0.86426 0.86039 0.90167 0.90314 0.89689 0.88804 0.95181 0.93872 0.92760 0.90355 0.91475 0.90468 0.92903 0.92873 0.92471 0.92480 0.93030 0.92750 0.91040 0.91691 0.90658 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.13 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.11 -1.26 9.68 -39.58 -0.38 -1.64 16 5 C -0.08 -1.02 5.13 -104.62 -0.54 -1.55 16 6 C -0.07 -0.97 3.95 -27.89 -0.11 -1.08 16 7 C -0.14 -2.16 3.84 -27.89 -0.11 -2.27 16 8 C 0.51 10.41 6.45 -10.99 -0.07 10.34 16 9 O -0.55 -13.59 15.54 5.55 0.09 -13.51 16 10 N -0.60 -12.45 2.26 -175.06 -0.40 -12.85 16 11 C 0.25 6.42 5.22 -5.19 -0.03 6.40 16 12 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.12 1.87 4.89 -4.04 -0.02 1.85 16 21 C -0.12 -1.63 3.11 -90.62 -0.28 -1.92 16 22 C -0.14 -1.60 9.19 37.16 0.34 -1.25 16 23 C -0.15 -1.91 7.59 37.16 0.28 -1.63 16 24 C -0.08 -0.91 5.88 -104.62 -0.62 -1.52 16 25 C -0.12 -1.37 9.22 36.01 0.33 -1.04 16 26 C -0.12 -1.30 9.36 -39.58 -0.37 -1.67 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.08 1.26 7.01 -51.93 -0.36 0.90 16 33 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 34 H 0.08 1.19 6.10 -51.93 -0.32 0.87 16 35 H 0.09 1.25 4.80 -51.93 -0.25 1.00 16 36 H 0.03 0.80 7.94 -51.93 -0.41 0.39 16 37 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.07 0.93 6.10 -51.93 -0.32 0.61 16 41 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.86 6.87 -51.93 -0.36 0.51 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.62 6.49 -51.93 -0.34 0.29 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 50 H 0.07 0.94 5.40 -51.93 -0.28 0.66 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -32.56 401.44 -10.05 -42.60 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.88 Total: 1.07 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.63 Total: -14.26 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.34 Total: -38.81 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.56 -10.05 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813278507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.034 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds