Wall clock time and date at job start Tue Mar 31 2020 11:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00089 * 2 1 4 4 C 1.38212 * 119.99991 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00241 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00144 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47425 * 264.99820 * 6 5 4 8 8 C 1.50693 * 109.47425 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00208 * 354.69830 * 8 7 6 10 10 N 1.34774 * 120.00247 * 174.69309 * 8 7 6 11 11 C 1.46503 * 120.00011 * 185.40150 * 10 8 7 12 12 C 1.50708 * 109.46861 * 90.00766 * 11 10 8 13 13 H 1.08000 * 119.99520 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00025 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99813 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46994 * 90.00386 * 16 14 12 18 18 H 1.48502 * 109.46730 * 209.99950 * 16 14 12 19 19 H 1.48496 * 109.47014 * 329.99863 * 16 14 12 20 20 C 1.46503 * 120.00126 * 5.41205 * 10 8 7 21 21 C 1.52995 * 109.47256 * 96.68191 * 20 10 8 22 22 C 1.53002 * 109.46823 * 174.11471 * 21 20 10 23 23 C 1.53006 * 109.47314 * 294.10799 * 21 20 10 24 24 C 1.38220 * 119.99498 * 0.25320 * 5 4 3 25 25 C 1.50703 * 119.99665 * 179.72501 * 24 5 4 26 26 C 1.38216 * 119.99846 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47306 * 90.00063 * 1 2 3 28 28 H 1.09006 * 109.47296 * 210.00134 * 1 2 3 29 29 H 1.09000 * 109.47617 * 329.99929 * 1 2 3 30 30 H 1.07993 * 120.00124 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00125 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47129 * 144.99816 * 6 5 4 33 33 H 1.08996 * 109.47350 * 25.00138 * 6 5 4 34 34 H 1.08996 * 109.47116 * 300.00461 * 7 6 5 35 35 H 1.09003 * 109.46970 * 59.99899 * 7 6 5 36 36 H 1.08999 * 109.47246 * 210.00003 * 11 10 8 37 37 H 1.08994 * 109.47518 * 330.00852 * 11 10 8 38 38 H 0.97000 * 120.00088 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.46883 * 216.68524 * 20 10 8 40 40 H 1.09000 * 109.46754 * 336.68068 * 20 10 8 41 41 H 1.08997 * 109.47358 * 54.10911 * 21 20 10 42 42 H 1.08997 * 109.47611 * 59.99595 * 22 21 20 43 43 H 1.09003 * 109.46640 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.46790 * 299.99263 * 22 21 20 45 45 H 1.09004 * 109.46654 * 64.70849 * 23 21 20 46 46 H 1.08994 * 109.47562 * 184.70960 * 23 21 20 47 47 H 1.09001 * 109.47185 * 304.71729 * 23 21 20 48 48 H 1.09006 * 109.46954 * 89.99634 * 25 24 5 49 49 H 1.09001 * 109.46927 * 209.99736 * 25 24 5 50 50 H 1.08995 * 109.46901 * 330.00219 * 25 24 5 51 51 H 1.08001 * 120.00129 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7786 0.0000 0.0005 7 6 6.2887 -0.1258 -1.4364 8 6 7.7956 -0.1264 -1.4364 9 8 8.4021 0.0610 -0.4029 10 7 8.4695 -0.3354 -2.5847 11 6 9.9296 -0.4540 -2.5660 12 6 10.3138 -1.8984 -2.3726 13 1 9.5470 -2.6524 -2.2732 14 6 11.6441 -2.2572 -2.3227 15 7 12.5778 -1.3391 -2.4443 16 14 12.1202 -4.0475 -2.0823 17 1 12.2484 -4.7076 -3.4063 18 1 13.4178 -4.1223 -1.3642 19 1 11.0729 -4.7354 -1.2854 20 6 7.7420 -0.4437 -3.8517 21 6 7.7513 0.9110 -4.5626 22 6 7.1211 0.7637 -5.9490 23 6 6.9486 1.9230 -3.7425 24 6 3.5805 -1.1970 -0.0053 25 6 4.3341 -2.5021 -0.0116 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 6.1420 -0.8419 0.5900 33 1 6.1420 0.9313 0.4348 34 1 5.9253 -1.0571 -1.8707 35 1 5.9254 0.7160 -2.0259 36 1 10.3356 -0.0936 -3.5111 37 1 10.3321 0.1417 -1.7468 38 1 13.5137 -1.5915 -2.4096 39 1 8.2233 -1.1895 -4.4843 40 1 6.7127 -0.7438 -3.6550 41 1 8.7787 1.2601 -4.6657 42 1 6.0937 0.4145 -5.8459 43 1 7.1282 1.7288 -6.4556 44 1 7.6929 0.0428 -6.5333 45 1 7.4445 2.0906 -2.7863 46 1 6.8847 2.8641 -4.2885 47 1 5.9450 1.5350 -3.5681 48 1 4.5157 -2.8217 1.0147 49 1 3.7450 -3.2593 -0.5291 50 1 5.2865 -2.3693 -0.5246 51 1 1.6580 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813278507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:55 Heat of formation + Delta-G solvation = -62.594175 kcal Electronic energy + Delta-G solvation = -27181.067348 eV Core-core repulsion = 23657.266436 eV Total energy + Delta-G solvation = -3523.800913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15055 -40.36051 -37.76076 -35.93235 -35.35564 -34.11739 -33.33824 -32.20179 -29.75985 -28.28594 -28.00672 -27.66858 -26.85927 -25.31482 -23.66690 -22.85904 -21.41838 -20.84075 -19.69929 -18.59872 -18.14468 -17.21394 -17.10885 -16.50044 -16.32944 -16.11533 -15.63808 -15.49904 -15.03623 -14.77524 -14.58595 -14.46476 -14.01713 -13.98500 -13.89024 -13.81831 -13.64405 -13.31661 -13.27799 -13.14988 -12.96367 -12.82140 -12.79368 -12.70322 -12.54771 -12.32129 -12.20190 -12.15262 -11.95680 -11.83303 -11.70762 -11.63199 -11.62105 -11.48756 -10.65071 -10.57108 -9.60416 -9.38272 -9.25547 -8.22921 -6.38331 0.44460 0.53333 1.35129 1.38300 1.48606 1.84433 2.30298 2.45289 2.84652 3.06240 3.61124 3.88017 3.90928 4.01257 4.03936 4.05917 4.08288 4.16924 4.21905 4.34175 4.44342 4.50178 4.51927 4.60696 4.71916 4.73614 4.77861 4.78896 4.85150 4.89965 4.92017 4.97009 5.01874 5.02643 5.05171 5.06932 5.07317 5.19388 5.23995 5.28065 5.35057 5.40464 5.43071 5.49325 5.58411 5.61135 5.75220 5.83209 5.86789 6.06316 6.19503 6.69696 6.81784 7.27711 7.50010 8.84123 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003410 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.114005 B = 8208.838667 C = 9316.891724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.097 4.097 6 C -0.058 4.058 7 C -0.124 4.124 8 C 0.500 3.500 9 O -0.600 6.600 10 N -0.600 5.600 11 C 0.264 3.736 12 C -0.542 4.542 13 H 0.054 0.946 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.968 3.032 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.111 3.889 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.127 4.127 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.018 0.982 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.858 2.990 -2.204 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.097 4.097 6 C -0.096 4.096 7 C -0.163 4.163 8 C 0.290 3.710 9 O -0.482 6.482 10 N -0.330 5.330 11 C 0.142 3.858 12 C -0.581 4.581 13 H 0.073 0.927 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.012 4.012 21 C -0.133 4.133 22 C -0.192 4.192 23 C -0.200 4.200 24 C -0.086 4.086 25 C -0.178 4.178 26 C -0.145 4.145 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.036 0.964 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.341 3.106 -1.701 25.588 hybrid contribution 1.439 -0.644 0.350 1.615 sum -23.902 2.462 -1.351 24.067 Atomic orbital electron populations 1.20815 0.89354 1.03513 1.03063 1.20241 0.97437 0.92846 0.98860 1.21239 0.93677 0.98528 1.01348 1.21207 0.94843 0.97436 0.99994 1.19691 0.94253 0.93639 1.02112 1.20176 0.91211 1.02776 0.95399 1.21860 0.89241 1.05784 0.99465 1.21296 0.91344 0.75660 0.82740 1.90623 1.71938 1.52006 1.33631 1.48174 1.07965 1.69304 1.07540 1.18645 0.76238 0.95557 0.95324 1.21718 0.92307 0.93841 1.50225 0.92737 1.25882 0.96243 1.02543 0.94546 1.70064 1.00793 1.35233 1.50842 0.85407 0.77515 0.79062 0.78791 1.18762 1.20695 1.19573 1.21847 0.97402 0.97692 0.84260 1.21503 0.99648 0.95264 0.96885 1.21707 1.01238 1.02437 0.93841 1.21928 0.99907 0.99302 0.98881 1.19929 0.94285 0.94826 0.99533 1.20904 0.99988 0.94276 1.02643 1.21120 0.92926 0.98635 1.01825 0.90321 0.90892 0.90709 0.84267 0.85467 0.92153 0.91733 0.87875 0.86449 0.96449 0.98744 0.92436 0.91341 0.88147 0.93595 0.90718 0.91498 0.92735 0.95452 0.91181 0.90489 0.91147 0.89855 0.92377 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 2 C -0.09 -1.61 5.88 -19.87 -0.12 -1.73 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 4 C -0.12 -2.51 9.68 22.27 0.22 -2.29 16 5 C -0.10 -2.38 5.13 -19.87 -0.10 -2.48 16 6 C -0.06 -1.72 3.95 29.85 0.12 -1.60 16 7 C -0.12 -3.71 3.84 29.85 0.11 -3.59 16 8 C 0.50 21.39 6.45 87.66 0.57 21.95 16 9 O -0.60 -31.97 15.54 -3.05 -0.05 -32.02 16 10 N -0.60 -26.12 2.26 -826.16 -1.87 -27.99 16 11 C 0.26 14.68 5.22 85.64 0.45 15.12 16 12 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 13 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 16 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.11 3.55 4.89 86.38 0.42 3.97 16 21 C -0.11 -3.12 3.11 -10.79 -0.03 -3.15 16 22 C -0.13 -2.69 9.19 71.98 0.66 -2.03 16 23 C -0.14 -3.50 7.59 71.98 0.55 -2.96 16 24 C -0.09 -1.92 5.88 -19.86 -0.12 -2.04 16 25 C -0.12 -2.60 9.22 71.24 0.66 -1.95 16 26 C -0.13 -2.40 9.36 22.27 0.21 -2.19 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 29 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.06 2.00 7.01 -2.39 -0.02 1.98 16 33 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 34 H 0.10 2.74 6.10 -2.39 -0.01 2.72 16 35 H 0.12 2.95 4.80 -2.39 -0.01 2.94 16 36 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 37 H -0.01 -0.36 7.35 -2.39 -0.02 -0.38 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 40 H 0.10 2.55 6.10 -2.39 -0.01 2.53 16 41 H 0.05 1.54 8.01 -2.39 -0.02 1.52 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.03 0.82 6.87 -2.38 -0.02 0.80 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.08 1.52 6.49 -2.39 -0.02 1.51 16 48 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 50 H 0.06 1.43 5.40 -2.39 -0.01 1.41 16 51 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.15 401.44 6.50 -68.65 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.89 Total: 19.29 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.22 Total: -18.34 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.58 Total: -85.09 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.02 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.15 6.50 -68.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813278507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.052 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds