Wall clock time and date at job start Tue Mar 31 2020 12:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.52997 * 109.47387 * 239.99342 * 2 1 3 5 5 C 1.53007 * 109.46767 * 119.99410 * 2 1 3 6 6 C 1.53002 * 109.47103 * 300.00429 * 5 2 1 7 7 C 1.52997 * 109.46896 * 180.02562 * 5 2 1 8 8 C 1.53002 * 109.46855 * 60.00471 * 5 2 1 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 5 2 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 5 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.08994 * 109.47458 * 300.00363 * 1 2 3 28 28 H 1.09000 * 109.46552 * 60.00764 * 1 2 3 29 29 H 1.09006 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47057 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46586 * 299.99563 * 3 2 1 32 32 H 1.09000 * 109.46917 * 59.99291 * 3 2 1 33 33 H 1.08997 * 109.47407 * 299.99972 * 4 2 1 34 34 H 1.09001 * 109.46918 * 60.00680 * 4 2 1 35 35 H 1.08996 * 109.46709 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.46626 * 180.02562 * 6 5 2 37 37 H 1.09002 * 109.46741 * 299.99899 * 6 5 2 38 38 H 1.08997 * 109.47395 * 59.99966 * 6 5 2 39 39 H 1.09002 * 109.46925 * 299.99716 * 7 5 2 40 40 H 1.08997 * 109.47098 * 60.00014 * 7 5 2 41 41 H 1.09000 * 109.47183 * 180.02562 * 7 5 2 42 42 H 1.08994 * 109.47287 * 59.99824 * 8 5 2 43 43 H 1.08997 * 109.47057 * 299.99675 * 8 5 2 44 44 H 0.97002 * 120.00149 * 0.02562 * 9 8 5 45 45 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 46 46 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 47 47 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 49 49 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 50 50 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 51 51 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5298 0.0002 2.4986 7 6 3.5700 -0.7206 1.2498 8 6 1.5300 -2.1637 1.2494 9 7 2.0188 -2.8544 2.4454 10 6 1.6929 -4.1446 2.6590 11 8 0.9954 -4.7339 1.8607 12 6 2.1952 -4.8548 3.8894 13 6 1.6930 -6.2757 3.8894 14 6 0.5398 -6.6010 4.5669 15 6 0.0794 -7.9083 4.5741 16 6 0.7689 -8.9011 3.8949 17 6 1.9205 -8.5977 3.2056 18 6 2.3975 -7.2738 3.1915 19 6 3.5795 -6.9502 2.4861 20 1 4.1740 -6.1011 2.7895 21 6 3.9788 -7.7299 1.3949 22 7 3.1274 -8.5445 0.8266 23 14 5.7277 -7.6077 0.7498 24 1 5.7742 -6.6381 -0.3740 25 1 6.6259 -7.1467 1.8388 26 1 6.1732 -8.9412 0.2717 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2491 34 1 1.6769 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2492 36 1 1.8935 -0.5134 3.3886 37 1 1.8932 1.0278 2.4985 38 1 0.4399 0.0002 2.4985 39 1 3.9337 -1.2343 0.3598 40 1 3.9329 0.3071 1.2499 41 1 3.9333 -1.2348 2.1396 42 1 1.8934 -2.6775 0.3595 43 1 0.4400 -2.1637 1.2493 44 1 2.5763 -2.3829 3.0840 45 1 1.8320 -4.3408 4.7794 46 1 3.2851 -4.8551 3.8893 47 1 -0.0057 -5.8356 5.0989 48 1 -0.8238 -8.1554 5.1124 49 1 0.4009 -9.9164 3.9069 50 1 2.4558 -9.3725 2.6769 51 1 3.4043 -9.0853 0.0704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814329103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:40 Heat of formation + Delta-G solvation = -43.917323 kcal Electronic energy + Delta-G solvation = -27669.775658 eV Core-core repulsion = 24146.784634 eV Total energy + Delta-G solvation = -3522.991024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.10544 -38.61401 -37.15529 -34.20635 -33.53180 -31.80389 -31.26451 -29.39046 -28.71590 -28.34081 -26.87113 -25.97904 -25.34194 -24.62802 -21.86854 -20.86959 -20.29249 -19.30982 -17.62780 -17.08466 -16.33663 -15.82474 -15.40483 -15.07002 -14.94828 -14.41690 -14.41056 -14.09553 -14.02722 -13.77357 -13.35876 -13.11446 -12.77507 -12.53836 -12.34050 -12.30249 -12.18600 -12.03749 -11.84072 -11.70076 -11.52910 -11.45398 -11.37471 -11.23569 -11.07417 -11.01528 -10.81124 -10.64089 -10.37321 -10.35158 -10.34253 -10.25753 -9.42000 -9.28249 -9.07882 -8.96229 -8.45826 -7.24825 -7.23248 -6.64075 -4.24793 2.85184 3.03928 3.10199 3.13605 3.31918 3.56658 3.84887 3.98921 4.51016 4.59206 4.59530 4.75256 5.01802 5.05684 5.14375 5.30018 5.49321 5.54763 5.55881 5.57935 5.60026 5.73307 5.80178 5.82664 5.83505 5.84971 5.86889 5.89190 5.98376 6.02049 6.04110 6.06940 6.10875 6.24931 6.29187 6.35337 6.40281 6.44280 6.45161 6.59072 6.84112 7.01059 7.18172 7.35485 7.49066 7.71269 7.97908 8.07655 8.16303 8.19976 8.39582 8.71848 8.98464 9.08388 9.09605 10.30935 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.003960 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.457658 B = 7068.808386 C = 8353.230437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.150 4.150 5 C -0.064 4.064 6 C -0.145 4.145 7 C -0.147 4.147 8 C 0.129 3.871 9 N -0.745 5.745 10 C 0.514 3.486 11 O -0.514 6.514 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.242 4.242 16 C -0.106 4.106 17 C -0.163 4.163 18 C 0.131 3.869 19 C -0.459 4.459 20 H 0.074 0.926 21 C 0.079 3.921 22 N -0.790 5.790 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.392 0.608 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.116 0.884 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 17.640 -0.199 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.207 4.207 5 C -0.065 4.065 6 C -0.202 4.202 7 C -0.204 4.204 8 C 0.005 3.995 9 N -0.400 5.400 10 C 0.301 3.699 11 O -0.386 6.386 12 C -0.109 4.109 13 C -0.182 4.182 14 C -0.099 4.099 15 C -0.261 4.261 16 C -0.124 4.124 17 C -0.182 4.182 18 C 0.128 3.872 19 C -0.489 4.489 20 H 0.092 0.908 21 C -0.139 4.139 22 N -0.415 5.415 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.226 0.774 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.134 0.866 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.319 17.010 -1.006 17.043 hybrid contribution 0.951 0.226 -0.251 1.010 sum 1.270 17.237 -1.257 17.329 Atomic orbital electron populations 1.22026 0.94633 1.02385 1.01565 1.20435 0.95533 0.95136 0.94310 1.21971 1.01155 0.95349 1.01549 1.22033 1.01313 1.00842 0.96543 1.20750 0.95968 0.94460 0.95307 1.21986 1.01451 1.00031 0.96763 1.21995 0.94290 1.01664 1.02433 1.21384 0.98799 0.90464 0.88821 1.46180 1.55599 1.12792 1.25454 1.21047 0.80086 0.80423 0.88337 1.90702 1.36456 1.65167 1.46316 1.20248 1.01775 0.94697 0.94186 1.18994 0.98419 0.92119 1.08620 1.20285 0.95397 0.95140 0.99121 1.20285 1.02467 0.93987 1.09394 1.20667 0.96540 0.96854 0.98379 1.21274 0.97793 0.96940 1.02199 1.17320 0.91087 0.90381 0.88391 1.19438 1.06736 1.11618 1.11121 0.90782 1.25828 0.98316 0.93791 0.95950 1.69844 1.34479 1.19715 1.17499 0.86435 0.83040 0.78487 0.79546 1.19776 1.18492 1.20081 0.92366 0.92851 0.92008 0.92376 0.92918 0.92432 0.91920 0.92862 0.92272 0.92601 0.92327 0.92189 0.92035 0.92339 0.92509 0.91668 0.91913 0.77419 0.90964 0.89194 0.89838 0.89753 0.89666 0.86622 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.77 37.16 0.29 -1.12 16 2 C -0.05 -0.50 0.35 -154.50 -0.05 -0.55 16 3 C -0.14 -1.12 7.77 37.16 0.29 -0.84 16 4 C -0.15 -1.52 7.77 37.16 0.29 -1.23 16 5 C -0.06 -0.66 0.11 -154.50 -0.02 -0.67 16 6 C -0.15 -1.31 7.59 37.16 0.28 -1.03 16 7 C -0.15 -1.44 7.60 37.16 0.28 -1.16 16 8 C 0.13 1.82 3.86 -4.04 -0.02 1.80 16 9 N -0.74 -11.39 4.96 -60.30 -0.30 -11.69 16 10 C 0.51 10.55 7.82 -10.99 -0.09 10.46 16 11 O -0.51 -13.26 16.03 5.56 0.09 -13.17 16 12 C -0.07 -1.38 5.35 -29.04 -0.16 -1.54 16 13 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 16 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 17 C -0.16 -4.42 8.68 -38.87 -0.34 -4.76 16 18 C 0.13 3.54 5.56 -106.82 -0.59 2.95 16 19 C -0.46 -12.24 8.46 -37.74 -0.32 -12.56 16 20 H 0.07 1.86 6.36 -52.48 -0.33 1.52 16 21 C 0.08 2.04 5.16 -17.34 -0.09 1.95 16 22 N -0.79 -21.44 10.98 55.55 0.61 -20.83 16 23 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 36 H 0.05 0.50 6.86 -51.93 -0.36 0.14 16 37 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 38 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 40 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 41 H 0.06 0.56 6.86 -51.93 -0.36 0.20 16 42 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 43 H 0.06 0.95 6.43 -51.93 -0.33 0.61 16 44 H 0.39 4.80 6.16 -40.82 -0.25 4.55 16 45 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 46 H 0.09 1.71 6.48 -51.93 -0.34 1.38 16 47 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 48 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 50 H 0.12 3.22 6.23 -52.49 -0.33 2.90 16 51 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -31.60 381.95 -8.80 -40.41 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -8.06 Total: 10.06 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.87 Total: -24.65 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.31 Total: -32.53 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.60 -8.80 -40.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814329103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.512 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds