Wall clock time and date at job start Tue Mar 31 2020 12:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.52997 * 109.47387 * 239.99342 * 2 1 3 5 5 C 1.53007 * 109.46767 * 119.99410 * 2 1 3 6 6 C 1.53002 * 109.47103 * 300.00429 * 5 2 1 7 7 C 1.52997 * 109.46896 * 180.02562 * 5 2 1 8 8 C 1.53002 * 109.46855 * 60.00471 * 5 2 1 9 9 N 1.46503 * 109.46820 * 179.97438 * 8 5 2 10 10 C 1.34777 * 120.00051 * 179.97438 * 9 8 5 11 11 O 1.21283 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.50692 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99719 * 25.87056 * 19 18 13 21 21 C 1.39942 * 120.00205 * 205.88123 * 19 18 13 22 22 N 1.30821 * 119.99968 * 16.29869 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 196.30797 * 21 19 18 24 24 H 1.48496 * 109.47194 * 265.18190 * 23 21 19 25 25 H 1.48505 * 109.46937 * 25.18007 * 23 21 19 26 26 H 1.48498 * 109.47234 * 145.18150 * 23 21 19 27 27 H 1.08994 * 109.47458 * 300.00363 * 1 2 3 28 28 H 1.09000 * 109.46552 * 60.00764 * 1 2 3 29 29 H 1.09006 * 109.46654 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47057 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46586 * 299.99563 * 3 2 1 32 32 H 1.09000 * 109.46917 * 59.99291 * 3 2 1 33 33 H 1.08997 * 109.47407 * 299.99972 * 4 2 1 34 34 H 1.09001 * 109.46918 * 60.00680 * 4 2 1 35 35 H 1.08996 * 109.46709 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.46626 * 180.02562 * 6 5 2 37 37 H 1.09002 * 109.46741 * 299.99899 * 6 5 2 38 38 H 1.08997 * 109.47395 * 59.99966 * 6 5 2 39 39 H 1.09002 * 109.46925 * 299.99716 * 7 5 2 40 40 H 1.08997 * 109.47098 * 60.00014 * 7 5 2 41 41 H 1.09000 * 109.47183 * 180.02562 * 7 5 2 42 42 H 1.08994 * 109.47287 * 59.99824 * 8 5 2 43 43 H 1.08997 * 109.47057 * 299.99675 * 8 5 2 44 44 H 0.97002 * 120.00149 * 0.02562 * 9 8 5 45 45 H 1.09000 * 109.47297 * 60.00731 * 12 10 9 46 46 H 1.08997 * 109.47185 * 300.00030 * 12 10 9 47 47 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 48 48 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 49 49 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 50 50 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 51 51 H 0.97002 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5298 0.0002 2.4986 7 6 3.5700 -0.7206 1.2498 8 6 1.5300 -2.1637 1.2494 9 7 2.0188 -2.8544 2.4454 10 6 1.6929 -4.1446 2.6590 11 8 0.9954 -4.7339 1.8607 12 6 2.1952 -4.8548 3.8894 13 6 1.6930 -6.2757 3.8894 14 6 0.5398 -6.6010 4.5669 15 6 0.0794 -7.9083 4.5741 16 6 0.7689 -8.9011 3.8949 17 6 1.9205 -8.5977 3.2056 18 6 2.3975 -7.2738 3.1915 19 6 3.5795 -6.9502 2.4861 20 1 4.1740 -6.1011 2.7895 21 6 3.9788 -7.7299 1.3949 22 7 3.1274 -8.5445 0.8266 23 14 5.7277 -7.6077 0.7498 24 1 5.7742 -6.6381 -0.3740 25 1 6.6259 -7.1467 1.8388 26 1 6.1732 -8.9412 0.2717 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2491 34 1 1.6769 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2492 36 1 1.8935 -0.5134 3.3886 37 1 1.8932 1.0278 2.4985 38 1 0.4399 0.0002 2.4985 39 1 3.9337 -1.2343 0.3598 40 1 3.9329 0.3071 1.2499 41 1 3.9333 -1.2348 2.1396 42 1 1.8934 -2.6775 0.3595 43 1 0.4400 -2.1637 1.2493 44 1 2.5763 -2.3829 3.0840 45 1 1.8320 -4.3408 4.7794 46 1 3.2851 -4.8551 3.8893 47 1 -0.0057 -5.8356 5.0989 48 1 -0.8238 -8.1554 5.1124 49 1 0.4009 -9.9164 3.9069 50 1 2.4558 -9.3725 2.6769 51 1 3.4043 -9.0853 0.0704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814329103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:39 Heat of formation + Delta-G solvation = -61.095332 kcal Electronic energy + Delta-G solvation = -27670.520552 eV Core-core repulsion = 24146.784634 eV Total energy + Delta-G solvation = -3523.735918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21177 -40.09336 -38.94072 -35.51292 -35.46073 -33.47776 -32.39205 -31.33303 -29.49161 -29.42886 -28.27694 -26.98292 -26.74945 -26.02023 -22.93617 -22.77967 -21.82958 -20.99218 -19.11966 -18.53713 -17.66358 -17.31422 -16.96439 -16.43955 -16.25702 -15.97688 -15.53381 -15.36010 -15.12850 -14.93834 -14.81617 -14.63483 -14.37075 -14.04750 -13.54701 -13.29296 -13.28584 -13.11078 -12.99240 -12.93367 -12.76645 -12.69767 -12.61889 -12.59973 -12.48591 -12.34573 -12.18603 -12.10655 -11.93487 -11.31509 -11.20231 -11.15116 -11.14575 -11.10883 -11.00839 -10.65725 -9.88657 -9.21207 -9.16089 -8.56515 -6.25551 1.00960 1.14071 1.34694 1.47593 1.53567 1.94642 2.20342 2.46946 2.82285 3.66598 3.75121 3.78888 3.79255 4.18037 4.20468 4.22543 4.33797 4.40773 4.48386 4.53760 4.62045 4.72706 4.74058 4.77684 4.79120 4.82859 4.83324 4.86963 5.00757 5.01905 5.05127 5.05419 5.09638 5.14190 5.15353 5.22427 5.25694 5.27922 5.29196 5.37526 5.48292 5.56218 5.64023 5.65372 5.68329 5.80164 6.05331 6.15422 6.22740 6.44921 6.73031 6.79839 7.00581 7.13508 7.56381 8.41221 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.003960 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.457658 B = 7068.808386 C = 8353.230437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.151 4.151 5 C -0.055 4.055 6 C -0.144 4.144 7 C -0.147 4.147 8 C 0.131 3.869 9 N -0.721 5.721 10 C 0.514 3.486 11 O -0.577 6.577 12 C -0.068 4.068 13 C -0.185 4.185 14 C -0.092 4.092 15 C -0.244 4.244 16 C -0.117 4.117 17 C -0.196 4.196 18 C 0.097 3.903 19 C -0.484 4.484 20 H 0.082 0.918 21 C 0.031 3.969 22 N -0.833 5.833 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.248 1.248 26 H -0.269 1.269 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.410 0.590 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 20.783 1.030 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.053 4.053 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.055 4.055 6 C -0.201 4.201 7 C -0.204 4.204 8 C 0.007 3.993 9 N -0.376 5.376 10 C 0.302 3.698 11 O -0.455 6.455 12 C -0.108 4.108 13 C -0.187 4.187 14 C -0.110 4.110 15 C -0.264 4.264 16 C -0.136 4.136 17 C -0.216 4.216 18 C 0.095 3.905 19 C -0.514 4.514 20 H 0.100 0.900 21 C -0.183 4.183 22 N -0.459 5.459 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.171 1.171 26 H -0.194 1.194 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.248 0.752 45 H 0.132 0.868 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.122 0.878 50 H 0.114 0.886 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.224 20.206 0.263 20.244 hybrid contribution 0.552 -0.721 -0.592 1.084 sum 1.777 19.485 -0.329 19.568 Atomic orbital electron populations 1.22021 0.94835 1.01162 1.02531 1.20443 0.95366 0.96214 0.93236 1.21935 1.01486 0.93670 1.02459 1.22036 1.01469 0.99564 0.97706 1.20703 0.96372 0.91706 0.96747 1.21994 1.01304 1.01063 0.95758 1.22015 0.93623 1.02981 1.01816 1.21441 0.98108 0.92714 0.87053 1.45941 1.54415 1.11300 1.25897 1.21149 0.79286 0.81581 0.87804 1.90685 1.39608 1.66905 1.48329 1.20301 1.02266 0.92606 0.95615 1.19488 0.98277 0.93881 1.07038 1.20734 0.95308 0.95999 0.98996 1.20705 1.03072 0.93926 1.08648 1.20944 0.96064 0.98391 0.98164 1.21301 0.99293 0.97094 1.03918 1.17737 0.92149 0.91063 0.89543 1.19719 1.07363 1.12534 1.11801 0.89988 1.26758 1.02477 0.93121 0.95944 1.69942 1.36638 1.21002 1.18338 0.85331 0.77579 0.78643 0.79006 1.19601 1.17073 1.19377 0.91330 0.91975 0.94308 0.91797 0.92292 0.91319 0.94554 0.91885 0.91998 0.92293 0.90181 0.92517 0.93369 0.90044 0.92467 0.94372 0.93154 0.75200 0.86835 0.88331 0.86576 0.86769 0.87812 0.88644 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 7.77 71.98 0.56 -2.10 16 2 C -0.05 -0.89 0.35 -52.18 -0.02 -0.91 16 3 C -0.14 -1.73 7.77 71.98 0.56 -1.17 16 4 C -0.15 -3.00 7.77 71.98 0.56 -2.44 16 5 C -0.05 -1.02 0.11 -52.18 -0.01 -1.03 16 6 C -0.14 -2.16 7.59 71.98 0.55 -1.61 16 7 C -0.15 -2.55 7.60 71.98 0.55 -2.01 16 8 C 0.13 3.70 3.86 86.38 0.33 4.03 16 9 N -0.72 -21.37 4.96 -463.07 -2.30 -23.67 16 10 C 0.51 20.99 7.82 87.65 0.69 21.68 16 11 O -0.58 -30.74 16.03 -3.04 -0.05 -30.78 16 12 C -0.07 -2.63 5.35 29.10 0.16 -2.48 16 13 C -0.19 -9.05 4.43 -19.40 -0.09 -9.13 16 14 C -0.09 -4.24 9.66 22.22 0.21 -4.03 16 15 C -0.24 -11.41 10.05 22.46 0.23 -11.18 16 16 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 17 C -0.20 -11.13 8.68 22.73 0.20 -10.94 16 18 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 19 C -0.48 -26.49 8.46 23.46 0.20 -26.29 16 20 H 0.08 4.16 6.36 -2.91 -0.02 4.14 16 21 C 0.03 1.62 5.16 85.26 0.44 2.06 16 22 N -0.83 -47.31 10.98 21.83 0.24 -47.07 16 23 Si 0.97 40.00 29.59 68.60 2.03 42.03 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 0.86 6.43 -2.38 -0.02 0.85 16 30 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 33 H 0.04 0.90 6.43 -2.39 -0.02 0.88 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.18 6.43 -2.39 -0.02 1.16 16 36 H 0.06 0.85 6.86 -2.39 -0.02 0.83 16 37 H 0.08 0.90 6.43 -2.39 -0.02 0.89 16 38 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 39 H 0.05 0.97 6.43 -2.39 -0.02 0.96 16 40 H 0.08 1.06 6.43 -2.39 -0.02 1.05 16 41 H 0.06 0.98 6.86 -2.39 -0.02 0.96 16 42 H 0.04 1.30 6.43 -2.39 -0.02 1.29 16 43 H 0.05 1.57 6.43 -2.39 -0.02 1.55 16 44 H 0.41 9.09 6.16 -92.71 -0.57 8.52 16 45 H 0.11 3.38 8.06 -2.39 -0.02 3.36 16 46 H 0.10 3.62 6.48 -2.39 -0.02 3.60 16 47 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 48 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 49 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 50 H 0.10 5.66 6.23 -2.91 -0.02 5.64 16 51 H 0.28 14.63 8.30 -92.71 -0.77 13.87 16 Total: -1.00 -72.61 381.95 5.50 -67.10 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.36 Total: 40.33 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 5.22 Total: -47.94 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.06 Total: -70.74 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -72.61 5.50 -67.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814329103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.006 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds