Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48507 * 109.46849 * 270.00006 * 3 2 1 5 5 H 1.48495 * 109.47140 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47065 * 150.00160 * 3 2 1 7 7 C 1.37881 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00244 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99967 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46820 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47072 * 64.99824 * 12 11 10 14 14 C 1.46904 * 110.99601 * 180.02562 * 13 12 11 15 15 H 1.08994 * 109.47428 * 34.99809 * 14 13 12 16 16 C 1.50702 * 109.47179 * 274.99730 * 14 13 12 17 17 C 1.38234 * 119.99895 * 319.73180 * 16 14 13 18 18 C 1.38241 * 120.00059 * 180.36621 * 17 16 14 19 19 C 1.38234 * 119.99640 * 359.83734 * 18 17 16 20 20 C 1.38234 * 120.00264 * 0.13873 * 19 18 17 21 21 C 1.38230 * 119.99880 * 359.95214 * 20 19 18 22 22 C 1.53002 * 109.46948 * 155.00262 * 14 13 12 23 23 C 1.52999 * 109.47174 * 59.99585 * 22 14 13 24 24 C 1.53002 * 109.47174 * 180.02562 * 23 22 14 25 25 C 1.53003 * 109.46932 * 59.99959 * 24 23 22 26 26 C 1.52999 * 109.47225 * 300.00010 * 25 24 23 27 27 C 1.53002 * 109.47174 * 60.00138 * 26 25 24 28 28 H 0.96997 * 119.99442 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47097 * 59.99685 * 9 7 2 30 30 H 1.09007 * 109.47068 * 299.99881 * 9 7 2 31 31 H 1.08993 * 109.47073 * 59.99843 * 11 10 9 32 32 H 1.08997 * 109.46796 * 299.99705 * 11 10 9 33 33 H 1.09002 * 109.47421 * 304.99798 * 12 11 10 34 34 H 1.08995 * 109.47082 * 185.00125 * 12 11 10 35 35 H 1.00900 * 111.00290 * 303.95102 * 13 12 11 36 36 H 1.08001 * 120.00279 * 0.27436 * 17 16 14 37 37 H 1.07997 * 119.99852 * 179.97438 * 18 17 16 38 38 H 1.07999 * 119.99712 * 180.11389 * 19 18 17 39 39 H 1.08001 * 119.99769 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47125 * 179.97438 * 22 14 13 42 42 H 1.08997 * 109.47345 * 300.00172 * 23 22 14 43 43 H 1.09003 * 109.47250 * 60.00074 * 23 22 14 44 44 H 1.08997 * 109.47125 * 300.00306 * 24 23 22 45 45 H 1.08994 * 109.47427 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47237 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.46932 * 60.00229 * 25 24 23 48 48 H 1.08997 * 109.47345 * 299.99966 * 26 25 24 49 49 H 1.09003 * 109.47250 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.47427 * 180.02562 * 27 26 25 51 51 H 1.08997 * 109.47125 * 59.99693 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 7 3.4090 -5.8877 1.2551 14 6 4.4605 -6.9130 1.2896 15 1 4.8617 -7.0559 0.2863 16 6 3.8801 -8.2113 1.7881 17 6 2.9688 -8.2071 2.8275 18 6 2.4421 -9.3986 3.2898 19 6 2.8241 -10.5941 2.7104 20 6 3.7350 -10.5983 1.6706 21 6 4.2631 -9.4070 1.2096 22 6 5.5818 -6.4621 2.2279 23 6 5.0185 -6.2616 3.6362 24 6 6.1396 -5.8101 4.5744 25 6 6.7284 -4.4918 4.0681 26 6 7.2917 -4.6923 2.6598 27 6 6.1706 -5.1438 1.7216 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 0.9446 -4.9827 -0.8886 32 1 0.9452 -4.9822 0.8914 33 1 3.3209 -5.7959 -0.8419 34 1 2.1819 -6.9375 -0.0887 35 1 3.7977 -4.9668 1.3924 36 1 2.6694 -7.2730 3.2795 37 1 1.7304 -9.3953 4.1022 38 1 2.4112 -11.5249 3.0704 39 1 4.0337 -11.5324 1.2182 40 1 4.9744 -9.4101 0.3970 41 1 6.3617 -7.2230 2.2539 42 1 4.2383 -5.5009 3.6106 43 1 4.5986 -7.2006 3.9968 44 1 6.9201 -6.5704 4.6001 45 1 5.7383 -5.6668 5.5776 46 1 7.5274 -4.1703 4.7362 47 1 5.9479 -3.7314 4.0424 48 1 8.0722 -5.4527 2.6855 49 1 7.7116 -3.7533 2.2992 50 1 6.5719 -5.2871 0.7184 51 1 5.3900 -4.3834 1.6959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815077855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = -51.430410 kcal Electronic energy + Delta-G solvation = -27278.463059 eV Core-core repulsion = 23755.146243 eV Total energy + Delta-G solvation = -3523.316815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.14261 -38.27840 -37.01234 -35.39338 -32.84994 -31.97270 -31.06496 -30.71090 -30.02848 -28.27142 -26.65297 -24.95517 -22.99753 -22.40208 -22.18606 -21.98625 -21.28565 -20.36072 -19.28204 -16.76033 -16.48506 -16.06014 -15.60902 -15.48175 -15.24385 -15.01143 -14.56197 -14.32814 -14.14599 -14.08569 -13.69998 -13.61308 -13.31143 -13.05845 -12.94656 -12.71135 -12.25270 -12.21851 -11.92359 -11.75522 -11.52363 -11.33393 -11.16748 -11.04890 -11.02513 -10.93475 -10.81759 -10.72508 -10.54418 -10.35041 -10.04288 -9.97828 -9.92342 -9.10635 -8.85345 -8.82115 -8.62556 -8.20900 -8.16526 -6.10966 -4.12696 1.37390 1.45424 3.29560 3.34753 3.39615 3.80094 4.30949 4.34841 4.62897 4.69267 4.76707 4.91655 4.94403 4.97682 5.00858 5.17249 5.22065 5.25562 5.29579 5.35031 5.43899 5.51270 5.55005 5.55633 5.58166 5.63750 5.69463 5.73412 5.79817 5.89821 6.00149 6.04397 6.05756 6.11219 6.19180 6.20886 6.25127 6.26977 6.27796 6.36864 6.37449 6.47652 6.55312 6.58341 6.70409 7.04303 7.12255 7.28293 7.44556 7.70483 7.78815 8.15600 8.58189 9.00435 9.52141 11.00548 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.003452 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.657276 B = 8110.342308 C = 9627.457212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.063 3.937 12 C 0.068 3.932 13 N -0.678 5.678 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.066 4.066 17 C -0.083 4.083 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.079 4.079 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.122 4.122 28 H 0.264 0.736 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.359 0.641 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.024 -19.300 6.654 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.319 6.319 11 C -0.015 4.015 12 C -0.062 4.062 13 N -0.313 5.313 14 C 0.017 3.983 15 H 0.067 0.933 16 C -0.067 4.067 17 C -0.101 4.101 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.097 4.097 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.182 0.818 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.616 -19.486 7.001 23.268 hybrid contribution 0.562 1.120 -0.763 1.467 sum 11.178 -18.366 6.238 22.387 Atomic orbital electron populations 1.69965 1.06098 1.27124 1.50527 1.24946 0.94957 0.99397 0.95186 0.86359 0.79686 0.82381 0.78199 1.20517 1.21079 1.19627 1.21041 0.93957 0.89403 1.50809 0.91658 1.20159 0.88692 0.83458 0.95331 1.87778 1.35775 1.13133 1.95231 1.22281 0.94552 0.85211 0.99444 1.21967 0.95851 0.97943 0.90395 1.60497 1.26449 1.08856 1.35535 1.20445 0.90706 0.89927 0.97270 0.93297 1.19861 0.96916 0.93879 0.96048 1.21160 0.95188 0.98177 0.95618 1.21210 1.00370 0.92776 1.00402 1.21086 0.98436 0.97919 0.97102 1.21012 0.98183 0.97671 0.97669 1.21011 1.00477 0.92294 1.00188 1.21240 0.95969 0.97214 0.95306 1.21699 0.97948 1.02111 0.93497 1.21541 0.98202 0.97064 0.98772 1.21557 1.00329 0.97895 0.96159 1.21466 0.97557 1.00916 0.95253 1.21680 0.98626 0.97181 0.98527 0.92668 0.97921 0.97655 0.94311 0.93601 0.94857 0.90861 0.81757 0.84824 0.86444 0.86717 0.86639 0.86684 0.91113 0.90594 0.91451 0.92659 0.92292 0.92527 0.91493 0.92482 0.92012 0.92213 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -15.01 9.43 -34.44 -0.32 -15.34 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.41 5.69 36.00 0.20 5.61 16 10 O -0.40 -9.39 9.85 -35.23 -0.35 -9.74 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.03 5.90 -3.82 -0.02 1.01 16 13 N -0.68 -9.59 4.84 -107.95 -0.52 -10.12 16 14 C 0.13 1.51 2.07 -68.86 -0.14 1.37 16 15 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 16 C -0.07 -0.77 4.47 -104.62 -0.47 -1.24 16 17 C -0.08 -0.99 7.10 -39.58 -0.28 -1.27 16 18 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 19 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 21 C -0.12 -1.30 9.67 -39.59 -0.38 -1.69 16 22 C -0.08 -0.86 2.01 -90.62 -0.18 -1.04 16 23 C -0.12 -1.27 3.96 -26.73 -0.11 -1.37 16 24 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 25 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 26 C -0.11 -1.19 5.92 -26.73 -0.16 -1.35 16 27 C -0.12 -1.41 4.97 -26.73 -0.13 -1.54 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.36 5.66 5.56 -39.29 -0.22 5.44 16 36 H 0.13 1.67 6.88 -52.49 -0.36 1.31 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 43 H 0.07 0.74 5.58 -51.93 -0.29 0.45 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -29.99 395.20 -11.69 -41.68 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -9.12 Total: 3.44 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.37 Total: -21.80 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.21 Total: -36.27 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.35 Total: -9.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.99 -11.69 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815077855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.755 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds