Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46623 * 120.00092 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46835 * 325.00273 * 14 13 12 16 16 C 1.50697 * 109.46602 * 85.00466 * 14 13 12 17 17 C 1.38233 * 120.00630 * 39.72492 * 16 14 13 18 18 C 1.38238 * 120.00058 * 179.78763 * 17 16 14 19 19 C 1.38228 * 120.00056 * 0.44492 * 18 17 16 20 20 C 1.38233 * 120.00193 * 359.80784 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.53002 * 109.46992 * 205.00108 * 14 13 12 23 23 C 1.52998 * 109.46597 * 180.02562 * 22 14 13 24 24 C 1.53009 * 109.46831 * 179.97438 * 23 22 14 25 25 C 1.52997 * 109.46988 * 60.00080 * 24 23 22 26 26 C 1.53006 * 109.47251 * 299.99868 * 25 24 23 27 27 C 1.52997 * 109.47179 * 60.00348 * 22 14 13 28 28 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 30 30 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 31 31 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 32 32 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 33 33 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 34 34 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 35 35 H 1.00902 * 111.00582 * 303.95797 * 13 12 11 36 36 H 1.07999 * 119.99577 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.99481 * 180.27454 * 18 17 16 38 38 H 1.07998 * 120.00193 * 179.83486 * 19 18 17 39 39 H 1.07999 * 120.00562 * 180.02562 * 20 19 18 40 40 H 1.08008 * 120.00011 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47075 * 300.00145 * 22 14 13 42 42 H 1.08997 * 109.47328 * 299.99748 * 23 22 14 43 43 H 1.09001 * 109.47116 * 60.00284 * 23 22 14 44 44 H 1.08997 * 109.47033 * 300.00020 * 24 23 22 45 45 H 1.09002 * 109.46897 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47272 * 180.02562 * 25 24 23 47 47 H 1.09008 * 109.47384 * 59.99632 * 25 24 23 48 48 H 1.08997 * 109.47161 * 300.00300 * 26 25 24 49 49 H 1.09001 * 109.47098 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47224 * 299.99535 * 27 22 14 51 51 H 1.08997 * 109.47283 * 59.99924 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.4579 -6.9140 1.2917 15 1 4.1052 -7.8132 0.7868 16 6 5.6895 -6.3965 0.5944 17 6 6.0774 -5.0803 0.7621 18 6 7.2096 -4.6070 0.1259 19 6 7.9489 -5.4472 -0.6854 20 6 7.5581 -6.7620 -0.8574 21 6 6.4284 -7.2366 -0.2176 22 6 4.7968 -7.2454 2.7465 23 6 5.8915 -8.3135 2.7843 24 6 6.2310 -8.6446 4.2391 25 6 4.9809 -9.1702 4.9475 26 6 3.8861 -8.1020 4.9096 27 6 3.5464 -7.7707 3.4545 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8913 32 1 0.9446 -4.9827 0.8887 33 1 3.3221 -5.7956 -0.8418 34 1 2.1820 -6.9375 -0.0904 35 1 3.7957 -4.9670 1.3935 36 1 5.4974 -4.4227 1.3927 37 1 7.5151 -3.5798 0.2605 38 1 8.8320 -5.0767 -1.1846 39 1 8.1359 -7.4187 -1.4909 40 1 6.1229 -8.2638 -0.3522 41 1 5.1495 -6.3461 3.2513 42 1 5.5393 -9.2129 2.2794 43 1 6.7823 -7.9389 2.2800 44 1 6.5834 -7.7450 4.7437 45 1 7.0106 -9.4059 4.2661 46 1 5.2225 -9.4056 5.9840 47 1 4.6283 -10.0698 4.4428 48 1 4.2385 -7.2024 5.4142 49 1 2.9953 -8.4766 5.4139 50 1 2.7667 -7.0094 3.4275 51 1 3.1937 -8.6700 2.9497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815077856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = -55.005772 kcal Electronic energy + Delta-G solvation = -27111.654420 eV Core-core repulsion = 23588.182565 eV Total energy + Delta-G solvation = -3523.471855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.08623 -38.21670 -37.06332 -35.50618 -32.84450 -32.01445 -30.90526 -30.73205 -30.12556 -28.33480 -26.68087 -24.66789 -22.87444 -22.49163 -22.30137 -22.02680 -21.23004 -20.20713 -19.64325 -17.14436 -16.40418 -15.75919 -15.68583 -15.51197 -15.24935 -14.74896 -14.57906 -14.36238 -14.21765 -14.14397 -13.89699 -13.45480 -13.33478 -13.20168 -12.96774 -12.32169 -12.29864 -12.20825 -12.04843 -11.84381 -11.64203 -11.32927 -11.18664 -11.11370 -11.03343 -10.82324 -10.79131 -10.73593 -10.61179 -10.42387 -10.12866 -10.02452 -9.93209 -9.10974 -8.87010 -8.81660 -8.65734 -8.19206 -8.15495 -6.10116 -4.11863 1.38152 1.44394 3.31896 3.34770 3.38285 3.81599 4.26255 4.35253 4.55579 4.73719 4.80354 4.85130 4.90394 4.97418 5.03063 5.14965 5.18217 5.26259 5.27690 5.38771 5.43910 5.49608 5.51950 5.52473 5.55148 5.62729 5.64195 5.68475 5.79130 5.91591 5.98563 6.00341 6.05388 6.06839 6.10167 6.14722 6.15714 6.23245 6.28563 6.37388 6.47972 6.48592 6.53531 6.57156 6.61674 7.03616 7.12875 7.27087 7.45333 7.66582 7.79371 8.16475 8.59385 9.01009 9.52844 11.01367 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003351 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.182551 B = 8354.166466 C = 9511.863346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.398 6.398 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.129 3.871 15 H 0.080 0.920 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.066 4.066 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.105 4.105 28 H 0.264 0.736 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.356 0.644 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -19.431 4.860 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.318 6.318 11 C -0.015 4.015 12 C -0.063 4.063 13 N -0.308 5.308 14 C 0.019 3.981 15 H 0.098 0.902 16 C -0.106 4.106 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.099 0.901 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.600 -19.630 5.211 23.901 hybrid contribution 0.714 1.301 -0.793 1.682 sum 13.315 -18.329 4.419 23.081 Atomic orbital electron populations 1.69953 1.06094 1.27231 1.50471 1.24942 0.94958 0.99377 0.95179 0.86417 0.79340 0.82034 0.78804 1.20069 1.21159 1.20003 1.21006 0.93922 0.89424 1.50906 0.91720 1.20151 0.88686 0.83463 0.95307 1.87789 1.35722 1.13104 1.95219 1.22290 0.94527 0.85302 0.99427 1.21963 0.95663 0.97870 0.90811 1.60701 1.25960 1.09096 1.35015 1.20654 0.87067 0.95350 0.95050 0.90192 1.20704 0.97982 0.94225 0.97684 1.21037 0.96627 0.95227 0.99729 1.21159 0.95258 0.99725 0.96908 1.21116 1.00032 0.94074 0.99207 1.21081 0.97197 0.95868 1.00008 1.20982 0.95602 0.99264 0.97552 1.21056 0.95348 0.98232 0.93903 1.21602 0.98683 0.98582 0.96340 1.21505 0.97273 1.00689 0.96008 1.21544 0.95761 0.98538 0.99803 1.21573 0.98071 0.98685 0.97523 1.21464 0.97709 1.01050 0.93990 0.92613 0.97922 0.97675 0.94293 0.93591 0.94736 0.90810 0.82214 0.85689 0.86035 0.86458 0.86514 0.86543 0.91158 0.92329 0.91876 0.92149 0.92503 0.92610 0.92303 0.92145 0.92357 0.90147 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -15.13 9.43 -34.44 -0.32 -15.45 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.45 5.69 36.00 0.20 5.66 16 10 O -0.40 -9.48 9.85 -35.23 -0.35 -9.83 16 11 C 0.06 1.17 6.28 37.16 0.23 1.40 16 12 C 0.07 1.01 5.90 -3.83 -0.02 0.98 16 13 N -0.68 -9.69 5.47 -107.95 -0.59 -10.28 16 14 C 0.13 1.53 1.81 -68.86 -0.12 1.40 16 15 H 0.08 0.91 7.66 -51.93 -0.40 0.51 16 16 C -0.10 -1.29 3.81 -104.62 -0.40 -1.69 16 17 C -0.11 -1.47 9.12 -39.58 -0.36 -1.83 16 18 C -0.11 -1.44 10.05 -39.59 -0.40 -1.83 16 19 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 20 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.12 -1.29 8.71 -39.58 -0.34 -1.64 16 22 C -0.07 -0.71 1.95 -90.62 -0.18 -0.89 16 23 C -0.11 -1.07 4.80 -26.73 -0.13 -1.20 16 24 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 25 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 26 C -0.12 -1.15 5.92 -26.70 -0.16 -1.31 16 27 C -0.10 -1.11 5.05 -26.71 -0.13 -1.24 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 34 H 0.07 0.95 8.05 -51.93 -0.42 0.54 16 35 H 0.36 5.79 5.90 -39.29 -0.23 5.56 16 36 H 0.13 1.78 6.50 -52.49 -0.34 1.44 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.10 8.04 -52.48 -0.42 0.68 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.64 6.64 -51.93 -0.34 0.29 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.00 7.60 -51.93 -0.39 0.60 16 51 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -30.37 399.90 -11.81 -42.19 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -9.28 Total: 3.32 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -3.34 Total: -22.01 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.15 Total: -36.55 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.35 Total: -9.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.37 -11.81 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815077856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.820 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds