Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46623 * 120.00092 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46835 * 325.00273 * 14 13 12 16 16 C 1.50697 * 109.46602 * 85.00466 * 14 13 12 17 17 C 1.38233 * 120.00630 * 39.72492 * 16 14 13 18 18 C 1.38238 * 120.00058 * 179.78763 * 17 16 14 19 19 C 1.38228 * 120.00056 * 0.44492 * 18 17 16 20 20 C 1.38233 * 120.00193 * 359.80784 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.53002 * 109.46992 * 205.00108 * 14 13 12 23 23 C 1.52998 * 109.46597 * 180.02562 * 22 14 13 24 24 C 1.53009 * 109.46831 * 179.97438 * 23 22 14 25 25 C 1.52997 * 109.46988 * 60.00080 * 24 23 22 26 26 C 1.53006 * 109.47251 * 299.99868 * 25 24 23 27 27 C 1.52997 * 109.47179 * 60.00348 * 22 14 13 28 28 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 30 30 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 31 31 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 32 32 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 33 33 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 34 34 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 35 35 H 1.00902 * 111.00582 * 303.95797 * 13 12 11 36 36 H 1.07999 * 119.99577 * 359.97438 * 17 16 14 37 37 H 1.08000 * 119.99481 * 180.27454 * 18 17 16 38 38 H 1.07998 * 120.00193 * 179.83486 * 19 18 17 39 39 H 1.07999 * 120.00562 * 180.02562 * 20 19 18 40 40 H 1.08008 * 120.00011 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47075 * 300.00145 * 22 14 13 42 42 H 1.08997 * 109.47328 * 299.99748 * 23 22 14 43 43 H 1.09001 * 109.47116 * 60.00284 * 23 22 14 44 44 H 1.08997 * 109.47033 * 300.00020 * 24 23 22 45 45 H 1.09002 * 109.46897 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47272 * 180.02562 * 25 24 23 47 47 H 1.09008 * 109.47384 * 59.99632 * 25 24 23 48 48 H 1.08997 * 109.47161 * 300.00300 * 26 25 24 49 49 H 1.09001 * 109.47098 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47224 * 299.99535 * 27 22 14 51 51 H 1.08997 * 109.47283 * 59.99924 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.4579 -6.9140 1.2917 15 1 4.1052 -7.8132 0.7868 16 6 5.6895 -6.3965 0.5944 17 6 6.0774 -5.0803 0.7621 18 6 7.2096 -4.6070 0.1259 19 6 7.9489 -5.4472 -0.6854 20 6 7.5581 -6.7620 -0.8574 21 6 6.4284 -7.2366 -0.2176 22 6 4.7968 -7.2454 2.7465 23 6 5.8915 -8.3135 2.7843 24 6 6.2310 -8.6446 4.2391 25 6 4.9809 -9.1702 4.9475 26 6 3.8861 -8.1020 4.9096 27 6 3.5464 -7.7707 3.4545 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8913 32 1 0.9446 -4.9827 0.8887 33 1 3.3221 -5.7956 -0.8418 34 1 2.1820 -6.9375 -0.0904 35 1 3.7957 -4.9670 1.3935 36 1 5.4974 -4.4227 1.3927 37 1 7.5151 -3.5798 0.2605 38 1 8.8320 -5.0767 -1.1846 39 1 8.1359 -7.4187 -1.4909 40 1 6.1229 -8.2638 -0.3522 41 1 5.1495 -6.3461 3.2513 42 1 5.5393 -9.2129 2.2794 43 1 6.7823 -7.9389 2.2800 44 1 6.5834 -7.7450 4.7437 45 1 7.0106 -9.4059 4.2661 46 1 5.2225 -9.4056 5.9840 47 1 4.6283 -10.0698 4.4428 48 1 4.2385 -7.2024 5.4142 49 1 2.9953 -8.4766 5.4139 50 1 2.7667 -7.0094 3.4275 51 1 3.1937 -8.6700 2.9497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815077856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = -70.330713 kcal Electronic energy + Delta-G solvation = -27112.318959 eV Core-core repulsion = 23588.182565 eV Total energy + Delta-G solvation = -3524.136394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01661 -39.05628 -38.75654 -36.72729 -34.94131 -33.22789 -31.82722 -31.54787 -30.97178 -29.96281 -28.49691 -25.68299 -24.54294 -23.80531 -23.30900 -22.86245 -22.53923 -21.09680 -20.46924 -18.66359 -18.08257 -17.42268 -16.98400 -16.58506 -16.38596 -16.21792 -15.95015 -15.65586 -15.16532 -15.04087 -14.91566 -14.81727 -14.50981 -14.22597 -14.09617 -13.77291 -13.43599 -13.24678 -13.06231 -12.99091 -12.88714 -12.82966 -12.70352 -12.58231 -12.31160 -12.03502 -11.97266 -11.91044 -11.79387 -11.65415 -11.30971 -11.26212 -10.90883 -10.88544 -10.79042 -10.23931 -9.79882 -9.59083 -9.33471 -8.33040 -6.45446 0.46281 0.51514 1.38125 1.42865 1.51223 2.33177 2.89057 3.00709 3.16036 3.23282 3.67185 3.93246 3.97438 4.00609 4.07381 4.15270 4.23516 4.28840 4.33192 4.36924 4.48588 4.53784 4.57048 4.58863 4.66134 4.71096 4.74338 4.77787 4.78712 4.81863 4.87458 4.91443 4.95955 5.11004 5.13976 5.15127 5.17748 5.25987 5.33337 5.34569 5.38751 5.50077 5.53232 5.58506 5.61527 5.65314 5.66562 5.68089 5.94908 6.13169 6.17876 6.38610 6.52581 6.80823 7.26352 8.79146 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003351 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.182551 B = 8354.166466 C = 9511.863346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.213 3.787 10 O -0.408 6.408 11 C 0.055 3.945 12 C 0.078 3.922 13 N -0.680 5.680 14 C 0.134 3.866 15 H 0.093 0.907 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.060 4.060 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.101 4.101 28 H 0.271 0.729 29 H -0.017 1.017 30 H -0.016 1.016 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.342 0.658 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -20.937 4.430 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.138 3.862 10 O -0.328 6.328 11 C -0.022 4.022 12 C -0.051 4.051 13 N -0.311 5.311 14 C 0.024 3.976 15 H 0.111 0.889 16 C -0.111 4.111 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.138 4.138 28 H 0.080 0.920 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.124 0.876 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.200 -21.171 4.786 25.937 hybrid contribution 0.193 1.694 -0.656 1.827 sum 14.393 -19.477 4.130 24.567 Atomic orbital electron populations 1.70065 1.07763 1.28696 1.50434 1.25953 0.95943 1.03347 0.93929 0.85261 0.78139 0.76827 0.79361 1.19053 1.19939 1.18987 1.21338 0.94012 0.90834 1.52299 0.92083 1.19759 0.88531 0.84642 0.93250 1.87763 1.35469 1.14341 1.95193 1.22601 0.96072 0.83902 0.99651 1.21897 0.94607 0.97705 0.90864 1.60747 1.27054 1.08945 1.34386 1.20708 0.86305 0.94729 0.95872 0.88860 1.20727 0.98338 0.93873 0.98157 1.21034 0.97372 0.95971 1.00672 1.21324 0.95530 1.00348 0.97699 1.21410 1.00441 0.94354 0.98682 1.21458 0.97039 0.95916 0.99637 1.21267 0.95444 1.00102 0.96733 1.20985 0.95973 0.97987 0.92973 1.21536 0.97687 0.98257 0.97001 1.21507 0.97816 1.00736 0.95360 1.21519 0.95016 0.98193 1.00502 1.21564 0.98849 0.98809 0.96598 1.21402 0.96903 1.00586 0.94938 0.92039 0.99913 0.99809 0.93610 0.93730 0.95694 0.87632 0.83800 0.87715 0.85944 0.84361 0.83668 0.84259 0.93249 0.91093 0.92460 0.93090 0.91115 0.91695 0.91457 0.93192 0.91818 0.92437 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.25 5.69 71.24 0.41 12.65 16 10 O -0.41 -20.18 9.85 -148.98 -1.47 -21.65 16 11 C 0.05 2.10 6.28 71.98 0.45 2.55 16 12 C 0.08 2.36 5.90 86.30 0.51 2.87 16 13 N -0.68 -19.87 5.47 -495.45 -2.71 -22.58 16 14 C 0.13 3.08 1.81 44.17 0.08 3.16 16 15 H 0.09 1.91 7.66 -2.39 -0.02 1.90 16 16 C -0.11 -2.65 3.81 -19.87 -0.08 -2.73 16 17 C -0.13 -3.73 9.12 22.27 0.20 -3.53 16 18 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 19 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 20 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 21 C -0.12 -2.38 8.71 22.27 0.19 -2.18 16 22 C -0.06 -1.27 1.95 -10.79 -0.02 -1.29 16 23 C -0.11 -1.83 4.80 30.60 0.15 -1.69 16 24 C -0.12 -1.83 5.92 30.60 0.18 -1.65 16 25 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 26 C -0.12 -2.20 5.92 30.61 0.18 -2.02 16 27 C -0.10 -2.08 5.05 30.61 0.15 -1.93 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 34 H 0.11 2.52 8.05 -2.39 -0.02 2.50 16 35 H 0.34 11.78 5.90 -89.69 -0.53 11.25 16 36 H 0.10 3.29 6.50 -2.91 -0.02 3.27 16 37 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.14 2.15 8.04 -2.91 -0.02 2.13 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.07 6.64 -2.39 -0.02 1.05 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.58 399.90 2.45 -64.14 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.34 Total: 26.80 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.97 Total: -37.20 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.42 Total: -79.01 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.47 Total: -21.65 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.58 2.45 -64.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815077856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.192 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds