Wall clock time and date at job start Tue Mar 31 2020 12:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.53006 * 109.46807 * 240.00396 * 2 1 3 5 5 C 1.50695 * 109.47385 * 120.00534 * 2 1 3 6 6 C 1.38314 * 120.05392 * 359.97438 * 5 2 1 7 7 C 1.37817 * 119.95064 * 180.34723 * 6 5 2 8 8 C 1.39611 * 120.41637 * 359.54944 * 7 6 5 9 9 C 1.38374 * 119.39214 * 0.26685 * 8 7 6 10 10 C 1.38045 * 120.05829 * 179.97438 * 5 2 1 11 11 C 1.50808 * 122.01229 * 180.23768 * 9 8 7 12 12 C 1.53038 * 109.66093 * 344.37676 * 11 9 8 13 13 C 1.53385 * 107.93297 * 47.29293 * 12 11 9 14 14 N 1.39414 * 117.65184 * 179.81724 * 8 7 6 15 15 C 1.46903 * 110.99661 * 285.84583 * 14 8 7 16 16 C 1.52994 * 109.47306 * 51.21063 * 15 14 8 17 17 O 1.42894 * 109.47327 * 63.40535 * 16 15 14 18 18 C 1.42902 * 113.99901 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46904 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00189 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99859 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46888 * 59.99801 * 23 21 19 25 25 H 1.48491 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47181 * 300.00071 * 23 21 19 27 27 H 1.09004 * 109.46610 * 299.99613 * 1 2 3 28 28 H 1.08996 * 109.47733 * 59.99520 * 1 2 3 29 29 H 1.08998 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46899 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47248 * 299.99881 * 3 2 1 32 32 H 1.08991 * 109.47223 * 60.00396 * 3 2 1 33 33 H 1.09006 * 109.46841 * 299.99865 * 4 2 1 34 34 H 1.08996 * 109.47393 * 59.99367 * 4 2 1 35 35 H 1.08997 * 109.47301 * 180.02562 * 4 2 1 36 36 H 1.07998 * 120.02852 * 0.07790 * 6 5 2 37 37 H 1.07996 * 119.78680 * 179.78479 * 7 6 5 38 38 H 1.08006 * 119.75625 * 359.89536 * 10 5 2 39 39 H 1.08998 * 109.43600 * 104.43518 * 11 9 8 40 40 H 1.08999 * 109.43530 * 224.31916 * 11 9 8 41 41 H 1.08999 * 109.76738 * 166.90070 * 12 11 9 42 42 H 1.09005 * 109.77067 * 287.62935 * 12 11 9 43 43 H 1.08998 * 109.60550 * 51.50245 * 13 12 11 44 44 H 1.08995 * 109.60776 * 171.83643 * 13 12 11 45 45 H 1.08998 * 109.47027 * 171.21010 * 15 14 8 46 46 H 1.09002 * 109.47001 * 291.20838 * 15 14 8 47 47 H 1.09001 * 109.46925 * 183.40692 * 16 15 14 48 48 H 1.09008 * 109.47183 * 303.40253 * 16 15 14 49 49 H 1.08995 * 109.47084 * 299.99626 * 18 17 16 50 50 H 1.09004 * 109.47333 * 60.00250 * 18 17 16 51 51 H 0.96996 * 120.00146 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.1346 -1.2362 2.1418 7 6 1.5964 -1.8793 3.2698 8 6 2.9676 -2.0129 3.4959 9 6 3.8613 -1.4884 2.5789 10 6 3.3894 -0.8378 1.4496 11 6 5.3539 -1.6034 2.7615 12 6 5.6672 -1.9934 4.2078 13 6 4.7490 -3.1605 4.5918 14 7 3.3708 -2.6702 4.6574 15 6 3.1697 -1.8214 5.8394 16 6 1.7358 -1.2877 5.8460 17 8 0.8217 -2.3795 5.9650 18 6 -0.5525 -1.9879 5.9804 19 6 -1.4223 -3.2120 6.1079 20 1 -0.9708 -4.1910 6.1714 21 6 -2.7945 -3.0820 6.1436 22 7 -3.3443 -1.8898 6.0669 23 14 -3.8726 -4.5994 6.3010 24 1 -3.5465 -5.3095 7.5639 25 1 -5.3006 -4.1925 6.3158 26 1 -3.6277 -5.5024 5.1479 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1299 -0.7217 -1.2492 36 1 0.0725 -1.1390 1.9718 37 1 0.8931 -2.2857 3.9815 38 1 4.0885 -0.4279 0.7357 39 1 5.7440 -2.3661 2.0875 40 1 5.8220 -0.6456 2.5345 41 1 6.7094 -2.3021 4.2889 42 1 5.4817 -1.1451 4.8668 43 1 4.8223 -3.9462 3.8398 44 1 5.0461 -3.5553 5.5633 45 1 3.3431 -2.4079 6.7416 46 1 3.8684 -0.9854 5.8095 47 1 1.6043 -0.6100 6.6895 48 1 1.5432 -0.7522 4.9162 49 1 -0.7319 -1.3246 6.8265 50 1 -0.7924 -1.4673 5.0532 51 1 -4.3096 -1.7983 6.0923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815078414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:54 Heat of formation + Delta-G solvation = -27.315145 kcal Electronic energy + Delta-G solvation = -27988.572791 eV Core-core repulsion = 24466.301692 eV Total energy + Delta-G solvation = -3522.271099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72449 -38.43152 -36.75764 -35.12995 -33.80460 -32.60600 -30.25813 -29.37985 -28.86326 -27.28114 -27.26329 -26.81205 -24.41028 -23.14759 -22.43209 -22.01435 -21.64349 -19.98271 -18.21415 -16.68380 -16.30556 -16.08129 -15.81623 -15.54108 -15.09694 -14.56301 -14.33332 -14.17156 -14.10249 -13.91125 -13.50227 -13.42265 -13.00560 -12.96813 -12.72375 -12.56560 -12.46356 -11.92850 -11.90689 -11.74436 -11.68030 -11.62589 -11.28832 -11.18341 -11.05199 -10.92481 -10.83806 -10.78952 -10.69818 -10.44510 -10.25108 -10.22912 -9.96484 -9.09684 -8.95891 -8.76735 -8.33443 -8.08255 -7.44756 -6.08372 -4.09728 1.64720 1.76579 3.34587 3.37104 3.41330 3.90645 4.10472 4.36906 4.64371 4.73238 4.82707 4.83835 4.90595 4.94439 5.05005 5.20685 5.28200 5.35134 5.40483 5.43620 5.51686 5.57845 5.58966 5.60560 5.65632 5.71254 5.75549 5.75794 5.83581 5.87531 5.89127 5.93045 6.00197 6.04829 6.08117 6.13593 6.19053 6.24215 6.28932 6.31637 6.35995 6.49783 6.75551 6.79947 7.01600 7.10040 7.22625 7.33403 7.43012 7.79264 7.83009 8.17532 8.59353 9.03891 9.55104 11.02952 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.004513 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.998930 B = 6202.857424 C = 8190.940693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.086 4.086 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.105 3.895 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.073 4.073 12 C -0.159 4.159 13 C 0.058 3.942 14 N -0.485 5.485 15 C 0.066 3.934 16 C 0.048 3.952 17 O -0.377 6.377 18 C 0.192 3.808 19 C -0.513 4.513 20 H 0.066 0.934 21 C 0.058 3.942 22 N -0.899 5.899 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.003 0.997 50 H 0.006 0.994 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 5.065 -10.701 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.194 4.194 4 C -0.193 4.193 5 C -0.087 4.087 6 C -0.134 4.134 7 C -0.130 4.130 8 C 0.009 3.991 9 C -0.128 4.128 10 C -0.130 4.130 11 C -0.110 4.110 12 C -0.198 4.198 13 C -0.070 4.070 14 N -0.201 5.201 15 C -0.059 4.059 16 C -0.030 4.030 17 O -0.297 6.297 18 C 0.118 3.882 19 C -0.551 4.551 20 H 0.085 0.915 21 C -0.143 4.143 22 N -0.538 5.538 23 Si 0.733 3.267 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.178 0.822 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.021 0.979 50 H 0.024 0.976 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.189 4.537 -10.566 19.858 hybrid contribution -0.275 0.229 -0.007 0.358 sum 15.914 4.767 -10.573 19.692 Atomic orbital electron populations 1.21968 0.94120 1.02327 1.01829 1.19425 0.95704 0.94674 0.92768 1.21875 1.00772 0.95036 1.01668 1.21877 1.00784 1.00431 0.96237 1.19633 0.93174 0.99802 0.96073 1.21133 0.99901 0.98555 0.93823 1.22040 0.95238 0.97902 0.97802 1.18460 0.93176 0.95552 0.91900 1.19817 0.94924 1.00746 0.97351 1.20563 0.94759 1.00756 0.96957 1.20444 0.92217 1.01586 0.96777 1.22213 1.00475 1.00163 0.96968 1.22187 0.85722 0.96575 1.02505 1.58577 1.22022 1.38023 1.01509 1.22193 0.95983 0.95203 0.92506 1.22633 0.89392 0.91096 0.99884 1.87953 1.17695 1.30211 1.93821 1.20204 0.76013 0.96616 0.95358 1.21009 0.90338 0.93410 1.50314 0.91538 1.24921 0.97721 0.96500 0.95195 1.69952 1.11275 1.22093 1.50462 0.86430 0.78823 0.82538 0.78912 1.20050 1.21226 1.19998 0.91995 0.92749 0.92039 0.92771 0.92710 0.92479 0.92481 0.92722 0.92760 0.85552 0.82221 0.87045 0.91011 0.91164 0.90987 0.91501 0.90326 0.90120 0.89595 0.93666 0.93961 0.92933 0.97926 0.97648 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.14 37.16 0.27 -1.45 16 2 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16 4 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 5 C -0.09 -1.22 4.76 -104.67 -0.50 -1.72 16 6 C -0.12 -1.94 8.96 -39.71 -0.36 -2.29 16 7 C -0.11 -2.07 6.89 -39.22 -0.27 -2.34 16 8 C 0.11 1.75 4.87 -83.85 -0.41 1.35 16 9 C -0.13 -1.78 5.74 -104.38 -0.60 -2.38 16 10 C -0.11 -1.50 8.31 -39.51 -0.33 -1.83 16 11 C -0.07 -0.81 5.81 -27.81 -0.16 -0.97 16 12 C -0.16 -1.66 6.03 -26.51 -0.16 -1.82 16 13 C 0.06 0.72 5.81 -3.88 -0.02 0.70 16 14 N -0.49 -7.85 4.59 -171.29 -0.79 -8.63 16 15 C 0.07 1.04 5.30 -3.83 -0.02 1.02 16 16 C 0.05 0.90 5.19 37.15 0.19 1.10 16 17 O -0.38 -8.97 8.59 -35.23 -0.30 -9.27 16 18 C 0.19 5.19 5.16 36.01 0.19 5.38 16 19 C -0.51 -14.97 9.43 -34.44 -0.32 -15.30 16 20 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 23 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 30 H 0.05 0.52 7.39 -51.92 -0.38 0.14 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.52 7.38 -51.93 -0.38 0.14 16 36 H 0.13 2.11 5.91 -52.49 -0.31 1.80 16 37 H 0.16 3.53 4.13 -52.49 -0.22 3.31 16 38 H 0.11 1.27 7.08 -52.48 -0.37 0.90 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.73 6.41 -51.93 -0.33 0.40 16 43 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 44 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.05 1.02 5.08 -51.92 -0.26 0.76 16 49 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 50 H 0.01 0.16 7.73 -51.93 -0.40 -0.24 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -30.80 384.01 -10.52 -41.32 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.81 Total: 1.48 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.12 Total: -21.62 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.60 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.30 Total: -9.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.80 -10.52 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815078414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.005 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds