Wall clock time and date at job start Tue Mar 31 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47055 * 2 1 4 4 C 1.53006 * 109.46807 * 240.00396 * 2 1 3 5 5 C 1.50695 * 109.47385 * 120.00534 * 2 1 3 6 6 C 1.38314 * 120.05392 * 359.97438 * 5 2 1 7 7 C 1.37817 * 119.95064 * 180.34723 * 6 5 2 8 8 C 1.39611 * 120.41637 * 359.54944 * 7 6 5 9 9 C 1.38374 * 119.39214 * 0.26685 * 8 7 6 10 10 C 1.38045 * 120.05829 * 179.97438 * 5 2 1 11 11 C 1.50808 * 122.01229 * 180.23768 * 9 8 7 12 12 C 1.53038 * 109.66093 * 344.37676 * 11 9 8 13 13 C 1.53385 * 107.93297 * 47.29293 * 12 11 9 14 14 N 1.39414 * 117.65184 * 179.81724 * 8 7 6 15 15 C 1.46903 * 110.99661 * 285.84583 * 14 8 7 16 16 C 1.52994 * 109.47306 * 51.21063 * 15 14 8 17 17 O 1.42894 * 109.47327 * 63.40535 * 16 15 14 18 18 C 1.42902 * 113.99901 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46904 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00189 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99859 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46888 * 59.99801 * 23 21 19 25 25 H 1.48491 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47181 * 300.00071 * 23 21 19 27 27 H 1.09004 * 109.46610 * 299.99613 * 1 2 3 28 28 H 1.08996 * 109.47733 * 59.99520 * 1 2 3 29 29 H 1.08998 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46899 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47248 * 299.99881 * 3 2 1 32 32 H 1.08991 * 109.47223 * 60.00396 * 3 2 1 33 33 H 1.09006 * 109.46841 * 299.99865 * 4 2 1 34 34 H 1.08996 * 109.47393 * 59.99367 * 4 2 1 35 35 H 1.08997 * 109.47301 * 180.02562 * 4 2 1 36 36 H 1.07998 * 120.02852 * 0.07790 * 6 5 2 37 37 H 1.07996 * 119.78680 * 179.78479 * 7 6 5 38 38 H 1.08006 * 119.75625 * 359.89536 * 10 5 2 39 39 H 1.08998 * 109.43600 * 104.43518 * 11 9 8 40 40 H 1.08999 * 109.43530 * 224.31916 * 11 9 8 41 41 H 1.08999 * 109.76738 * 166.90070 * 12 11 9 42 42 H 1.09005 * 109.77067 * 287.62935 * 12 11 9 43 43 H 1.08998 * 109.60550 * 51.50245 * 13 12 11 44 44 H 1.08995 * 109.60776 * 171.83643 * 13 12 11 45 45 H 1.08998 * 109.47027 * 171.21010 * 15 14 8 46 46 H 1.09002 * 109.47001 * 291.20838 * 15 14 8 47 47 H 1.09001 * 109.46925 * 183.40692 * 16 15 14 48 48 H 1.09008 * 109.47183 * 303.40253 * 16 15 14 49 49 H 1.08995 * 109.47084 * 299.99626 * 18 17 16 50 50 H 1.09004 * 109.47333 * 60.00250 * 18 17 16 51 51 H 0.96996 * 120.00146 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.1346 -1.2362 2.1418 7 6 1.5964 -1.8793 3.2698 8 6 2.9676 -2.0129 3.4959 9 6 3.8613 -1.4884 2.5789 10 6 3.3894 -0.8378 1.4496 11 6 5.3539 -1.6034 2.7615 12 6 5.6672 -1.9934 4.2078 13 6 4.7490 -3.1605 4.5918 14 7 3.3708 -2.6702 4.6574 15 6 3.1697 -1.8214 5.8394 16 6 1.7358 -1.2877 5.8460 17 8 0.8217 -2.3795 5.9650 18 6 -0.5525 -1.9879 5.9804 19 6 -1.4223 -3.2120 6.1079 20 1 -0.9708 -4.1910 6.1714 21 6 -2.7945 -3.0820 6.1436 22 7 -3.3443 -1.8898 6.0669 23 14 -3.8726 -4.5994 6.3010 24 1 -3.5465 -5.3095 7.5639 25 1 -5.3006 -4.1925 6.3158 26 1 -3.6277 -5.5024 5.1479 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1299 -0.7217 -1.2492 36 1 0.0725 -1.1390 1.9718 37 1 0.8931 -2.2857 3.9815 38 1 4.0885 -0.4279 0.7357 39 1 5.7440 -2.3661 2.0875 40 1 5.8220 -0.6456 2.5345 41 1 6.7094 -2.3021 4.2889 42 1 5.4817 -1.1451 4.8668 43 1 4.8223 -3.9462 3.8398 44 1 5.0461 -3.5553 5.5633 45 1 3.3431 -2.4079 6.7416 46 1 3.8684 -0.9854 5.8095 47 1 1.6043 -0.6100 6.6895 48 1 1.5432 -0.7522 4.9162 49 1 -0.7319 -1.3246 6.8265 50 1 -0.7924 -1.4673 5.0532 51 1 -4.3096 -1.7983 6.0923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815078414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:53 Heat of formation + Delta-G solvation = -43.790781 kcal Electronic energy + Delta-G solvation = -27989.287228 eV Core-core repulsion = 24466.301692 eV Total energy + Delta-G solvation = -3522.985536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88109 -39.52597 -38.48144 -36.18919 -35.20716 -34.58251 -31.45263 -30.69716 -30.12361 -28.85272 -28.22768 -28.06580 -25.50662 -24.56727 -24.20420 -23.36521 -22.84308 -21.03078 -19.27862 -18.63366 -17.82669 -17.46792 -17.30761 -16.91458 -16.43690 -16.17480 -15.51960 -15.38224 -15.13897 -15.06929 -14.98869 -14.51150 -14.32924 -14.04255 -13.93034 -13.83849 -13.56828 -13.36379 -13.21728 -12.96439 -12.83755 -12.76108 -12.71872 -12.55922 -12.51386 -12.34016 -12.18525 -11.98234 -11.89656 -11.71310 -11.66356 -11.32113 -11.30104 -11.24821 -10.88111 -10.28902 -9.97811 -9.46758 -8.61644 -8.32320 -6.44319 0.46750 0.54215 1.37580 1.42397 1.50619 2.33269 2.72260 2.95355 3.01251 3.18036 3.68638 3.79358 3.90278 3.96655 4.01380 4.08900 4.13020 4.19118 4.24910 4.37126 4.43649 4.44424 4.50990 4.59213 4.63069 4.72596 4.78396 4.80014 4.84112 4.85099 4.90044 4.90877 4.94007 5.02025 5.03387 5.04194 5.08733 5.13870 5.16699 5.22315 5.24928 5.34332 5.37612 5.47743 5.54054 5.57527 5.63364 5.83945 5.95863 5.98324 6.18114 6.52728 6.62044 6.81944 7.27249 8.79620 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.004513 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.998930 B = 6202.857424 C = 8190.940693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.082 4.082 6 C -0.135 4.135 7 C -0.142 4.142 8 C 0.094 3.906 9 C -0.122 4.122 10 C -0.107 4.107 11 C -0.072 4.072 12 C -0.151 4.151 13 C 0.054 3.946 14 N -0.512 5.512 15 C 0.076 3.924 16 C 0.041 3.959 17 O -0.386 6.386 18 C 0.213 3.787 19 C -0.545 4.545 20 H 0.059 0.941 21 C 0.010 3.990 22 N -0.929 5.929 23 Si 0.979 3.021 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.268 1.268 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.145 0.855 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.046 0.954 49 H -0.019 1.019 50 H -0.017 1.017 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.286 5.113 -12.171 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.190 4.190 4 C -0.189 4.189 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.002 4.002 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.073 4.073 14 N -0.229 5.229 15 C -0.048 4.048 16 C -0.036 4.036 17 O -0.306 6.306 18 C 0.138 3.862 19 C -0.582 4.582 20 H 0.077 0.923 21 C -0.189 4.189 22 N -0.568 5.568 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.198 1.198 26 H -0.193 1.193 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.162 0.838 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.063 0.937 49 H -0.002 1.002 50 H 0.001 0.999 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.905 4.591 -12.033 22.875 hybrid contribution -1.082 0.260 0.415 1.187 sum 17.823 4.851 -11.617 21.821 Atomic orbital electron populations 1.21962 0.94953 1.01423 1.01907 1.19504 0.95138 0.95669 0.92302 1.21852 1.01574 0.93647 1.01911 1.21851 1.01553 0.99632 0.95891 1.19899 0.93379 0.98878 0.96146 1.21089 0.99766 0.99911 0.94632 1.21777 0.96079 1.00161 0.98139 1.18482 0.92487 0.96319 0.92903 1.20225 0.96739 0.99129 0.96415 1.20938 0.94696 0.99745 0.97108 1.20559 0.89460 1.03306 0.97546 1.22169 1.01483 0.98876 0.96402 1.22313 0.84183 0.97434 1.03333 1.58487 1.24737 1.38376 1.01299 1.22114 0.93566 0.96259 0.92910 1.22896 0.90621 0.90352 0.99681 1.87911 1.16567 1.32289 1.93840 1.19733 0.77968 0.95402 0.93074 1.21305 0.91577 0.93599 1.51757 0.92302 1.25902 0.98898 1.00098 0.94003 1.70064 1.11989 1.24392 1.50374 0.85299 0.76983 0.78218 0.79323 1.18928 1.19821 1.19308 0.93822 0.90671 0.93523 0.91404 0.90865 0.93912 0.93758 0.90863 0.91444 0.87317 0.86619 0.83775 0.89448 0.88956 0.87958 0.91826 0.90536 0.88892 0.89081 0.90894 0.93480 0.93657 1.00150 0.99946 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 7.14 71.98 0.51 -3.02 16 2 C -0.03 -0.58 0.85 -52.93 -0.05 -0.63 16 3 C -0.13 -2.45 8.29 71.98 0.60 -1.85 16 4 C -0.13 -2.40 8.29 71.98 0.60 -1.81 16 5 C -0.08 -2.33 4.76 -19.89 -0.09 -2.42 16 6 C -0.14 -4.92 8.96 22.19 0.20 -4.72 16 7 C -0.14 -5.74 6.89 22.50 0.16 -5.58 16 8 C 0.09 3.19 4.87 38.30 0.19 3.38 16 9 C -0.12 -3.24 5.74 -19.71 -0.11 -3.36 16 10 C -0.11 -2.63 8.31 22.31 0.19 -2.45 16 11 C -0.07 -1.30 5.81 29.89 0.17 -1.12 16 12 C -0.15 -2.58 6.03 30.74 0.19 -2.40 16 13 C 0.05 1.24 5.81 86.52 0.50 1.74 16 14 N -0.51 -16.59 4.59 -695.82 -3.19 -19.78 16 15 C 0.08 2.40 5.30 86.30 0.46 2.86 16 16 C 0.04 1.67 5.19 71.98 0.37 2.04 16 17 O -0.39 -19.74 8.59 -148.98 -1.28 -21.02 16 18 C 0.21 12.43 5.16 71.24 0.37 12.80 16 19 C -0.54 -33.51 9.43 25.60 0.24 -33.26 16 20 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 21 C 0.01 0.57 5.46 84.66 0.46 1.03 16 22 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 23 Si 0.98 45.74 29.54 68.60 2.03 47.76 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 H 0.04 1.19 7.52 -2.38 -0.02 1.17 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.24 7.51 -2.39 -0.02 1.22 16 30 H 0.07 1.07 7.39 -2.38 -0.02 1.05 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.05 7.38 -2.39 -0.02 1.04 16 36 H 0.11 4.15 5.91 -2.91 -0.02 4.13 16 37 H 0.12 5.69 4.13 -2.91 -0.01 5.68 16 38 H 0.14 2.63 7.08 -2.91 -0.02 2.61 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.16 6.41 -2.38 -0.02 1.14 16 43 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 44 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 45 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.07 1.88 6.44 -2.39 -0.02 1.87 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.92 5.08 -2.38 -0.01 1.90 16 49 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 50 H -0.02 -1.05 7.73 -2.38 -0.02 -1.07 16 51 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -71.25 384.01 3.68 -67.57 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.89 Total: 21.04 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.94 Total: -38.77 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.91 Total: -76.58 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.28 Total: -21.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.25 3.68 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815078414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.778 kcal (2) G-P(sol) polarization free energy of solvation -71.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds