Wall clock time and date at job start Tue Mar 31 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47297 * 2 1 4 4 C 1.50703 * 109.47062 * 119.99901 * 2 1 3 5 5 C 1.38233 * 119.99520 * 119.99964 * 4 2 1 6 6 C 1.38238 * 119.99704 * 180.02562 * 5 4 2 7 7 C 1.38231 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00093 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.46442 * 330.00019 * 8 7 6 10 10 C 1.53001 * 109.47316 * 89.99782 * 8 7 6 11 11 C 1.52997 * 109.47050 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46843 * 300.00019 * 11 10 8 13 13 N 1.46899 * 109.47079 * 300.00048 * 12 11 10 14 14 C 1.46901 * 111.00128 * 275.00147 * 13 12 11 15 15 C 1.50703 * 109.47102 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99688 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99853 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46874 * 89.99784 * 19 17 15 21 21 H 1.48498 * 109.47422 * 209.99961 * 19 17 15 22 22 H 1.48503 * 109.47018 * 330.00246 * 19 17 15 23 23 C 1.52998 * 109.46956 * 60.00175 * 12 11 10 24 24 C 1.52997 * 109.47201 * 299.99605 * 23 12 11 25 25 C 1.38234 * 120.00565 * 0.25719 * 7 6 5 26 26 C 1.38231 * 120.00204 * 299.97635 * 4 2 1 27 27 H 1.09000 * 109.47446 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46889 * 300.00331 * 1 2 3 29 29 H 1.09000 * 109.47142 * 59.99748 * 1 2 3 30 30 H 1.08996 * 109.46855 * 240.00068 * 2 1 3 31 31 H 1.08994 * 109.47183 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46775 * 300.00156 * 3 2 1 33 33 H 1.09002 * 109.46877 * 59.99568 * 3 2 1 34 34 H 1.07999 * 120.00221 * 359.97438 * 5 4 2 35 35 H 1.07995 * 120.00112 * 179.97438 * 6 5 4 36 36 H 0.96700 * 114.00311 * 60.00230 * 9 8 7 37 37 H 1.08999 * 109.47164 * 300.00418 * 10 8 7 38 38 H 1.08997 * 109.47124 * 60.00119 * 10 8 7 39 39 H 1.08997 * 109.46932 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.47549 * 59.99780 * 11 10 8 41 41 H 1.08997 * 109.46829 * 180.02562 * 12 11 10 42 42 H 1.00896 * 111.00363 * 151.04511 * 13 12 11 43 43 H 1.08997 * 109.47268 * 300.00122 * 14 13 12 44 44 H 1.09006 * 109.46851 * 60.00127 * 14 13 12 45 45 H 0.97000 * 119.99561 * 180.02562 * 18 17 15 46 46 H 1.09009 * 109.46785 * 179.97438 * 23 12 11 47 47 H 1.08997 * 109.47329 * 60.00303 * 23 12 11 48 48 H 1.08997 * 109.47549 * 300.00564 * 24 23 12 49 49 H 1.08997 * 109.46932 * 180.02562 * 24 23 12 50 50 H 1.07995 * 120.00294 * 179.73101 * 25 7 6 51 51 H 1.08007 * 120.00135 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8343 1.1036 6 6 3.2874 -2.4863 2.2323 7 6 2.9535 -2.0140 3.4877 8 6 3.4548 -2.7251 4.7183 9 8 3.6125 -4.1165 4.4332 10 6 4.8030 -2.1339 5.1353 11 6 5.3123 -2.8563 6.3841 12 6 4.3043 -2.6801 7.5218 13 7 4.1421 -1.2499 7.8152 14 6 5.1785 -0.7825 8.7455 15 6 4.9805 0.6857 9.0217 16 1 4.1664 1.2183 8.5527 17 6 5.8392 1.3491 9.8723 18 7 6.8314 0.7007 10.4422 19 14 5.5941 3.1691 10.2142 20 1 4.6997 3.3363 11.3878 21 1 6.9076 3.8006 10.4989 22 1 4.9800 3.8173 9.0276 23 6 2.9562 -3.2713 7.1047 24 6 2.4470 -2.5490 5.8558 25 6 2.1548 -0.8929 3.6147 26 6 1.6988 -0.2379 2.4860 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.0876 -2.2035 0.1227 35 1 3.9079 -3.3646 2.1332 36 1 4.2388 -4.3035 3.7205 37 1 5.5211 -2.2597 4.3250 38 1 4.6828 -1.0726 5.3526 39 1 6.2725 -2.4348 6.6814 40 1 5.4326 -3.9175 6.1665 41 1 4.6673 -3.1944 8.4116 42 1 3.2195 -1.0569 8.1751 43 1 5.1076 -1.3410 9.6788 44 1 6.1620 -0.9390 8.3022 45 1 7.4352 1.1674 11.0409 46 1 2.2383 -3.1462 7.9154 47 1 3.0765 -4.3325 6.8870 48 1 2.3266 -1.4878 6.0735 49 1 1.4863 -2.9699 5.5590 50 1 1.8904 -0.5265 4.5956 51 1 1.0778 0.6403 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816593178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:09 Heat of formation + Delta-G solvation = -53.643462 kcal Electronic energy + Delta-G solvation = -27255.645065 eV Core-core repulsion = 23732.232285 eV Total energy + Delta-G solvation = -3523.412781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39374 -38.71800 -36.28752 -35.07673 -33.39890 -31.99568 -30.95325 -30.42672 -30.22619 -27.75326 -27.36292 -25.73689 -23.43227 -23.11751 -22.22611 -21.65036 -20.97083 -19.85654 -18.78787 -17.27754 -16.46396 -15.89150 -15.59822 -15.26958 -14.90617 -14.73908 -14.31527 -14.28987 -13.91523 -13.80494 -13.76803 -13.42961 -12.98132 -12.86142 -12.65533 -12.50275 -12.26619 -12.09680 -12.05201 -11.76333 -11.63257 -11.43338 -11.39157 -11.25845 -11.02505 -10.92932 -10.84430 -10.72791 -10.49985 -10.37493 -10.29318 -9.86131 -9.76740 -9.44649 -9.10433 -8.89287 -8.47138 -8.45595 -7.22126 -6.01642 -4.03241 1.32806 1.42637 3.31833 3.38090 3.42249 3.72172 4.43085 4.43840 4.47805 4.59130 4.70987 4.88244 4.97716 4.99082 5.10965 5.16495 5.22500 5.29844 5.34579 5.39361 5.41828 5.46828 5.59826 5.60704 5.66658 5.71144 5.75422 5.76680 5.81537 5.92843 5.95864 6.00373 6.02088 6.08375 6.11691 6.18613 6.34144 6.43137 6.50170 6.57164 6.61066 6.63544 6.71086 6.74147 6.88647 7.00995 7.32935 7.47150 7.75229 7.81552 8.17168 8.45697 8.66357 9.06710 9.61653 11.09466 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003349 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.031306 B = 8359.395839 C = 9974.692043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.101 4.101 8 C 0.179 3.821 9 O -0.553 6.553 10 C -0.125 4.125 11 C -0.097 4.097 12 C 0.084 3.916 13 N -0.682 5.682 14 C 0.195 3.805 15 C -0.512 4.512 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.114 4.114 24 C -0.092 4.092 25 C -0.104 4.104 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.367 0.633 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.034 0.966 42 H 0.326 0.674 43 H -0.016 1.016 44 H 0.027 0.973 45 H 0.261 0.739 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.130 0.870 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -6.105 -20.130 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.101 4.101 8 C 0.138 3.862 9 O -0.359 6.359 10 C -0.162 4.162 11 C -0.135 4.135 12 C -0.027 4.027 13 N -0.313 5.313 14 C 0.068 3.932 15 C -0.550 4.550 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.152 4.152 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.130 4.130 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.214 0.786 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.143 0.857 43 H 0.002 0.998 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.148 0.852 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.184 -5.924 -20.080 23.281 hybrid contribution 0.238 0.671 0.661 0.971 sum -9.946 -5.253 -19.419 22.442 Atomic orbital electron populations 1.21859 0.94461 1.01926 1.01874 1.20107 0.95854 0.96059 0.95377 1.21865 1.01357 0.95105 1.01894 1.19814 0.98137 0.95878 0.94594 1.20932 0.98682 0.95854 0.98187 1.20808 1.00503 0.99852 0.92033 1.20587 0.97712 0.96564 0.95253 1.20036 0.95585 0.79912 0.90621 1.86573 1.66937 1.23986 1.58362 1.22009 0.94258 1.02861 0.97119 1.21377 0.98776 0.98887 0.94484 1.21431 0.94334 0.90593 0.96318 1.60708 1.07242 1.12726 1.50627 1.19568 0.90514 0.94809 0.88281 1.21196 1.13286 0.94444 1.26118 0.92057 1.24987 0.95212 0.98431 0.95967 1.69965 1.16598 1.36294 1.30930 0.86523 0.77363 0.85121 0.78542 1.20775 1.21292 1.19805 1.21635 0.96728 1.00045 0.96789 1.21456 0.96417 1.01966 0.93131 1.21166 0.96919 0.95023 0.99094 1.20962 1.00394 0.99816 0.91874 0.92615 0.92363 0.92548 0.90760 0.92472 0.92556 0.92298 0.86500 0.86523 0.78554 0.93231 0.88895 0.91917 0.92565 0.94843 0.85672 0.99847 0.95477 0.92980 0.92491 0.91362 0.89306 0.92348 0.85242 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.01 37.16 0.33 -0.76 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.17 9.01 37.16 0.33 -0.84 16 4 C -0.08 -0.89 4.78 -104.62 -0.50 -1.39 16 5 C -0.12 -1.26 9.67 -39.58 -0.38 -1.64 16 6 C -0.11 -1.29 9.32 -39.58 -0.37 -1.66 16 7 C -0.10 -1.29 4.84 -104.62 -0.51 -1.80 16 8 C 0.18 2.40 0.84 -91.77 -0.08 2.33 16 9 O -0.55 -7.06 11.36 -35.23 -0.40 -7.46 16 10 C -0.12 -1.89 4.74 -26.73 -0.13 -2.02 16 11 C -0.10 -1.61 5.39 -26.73 -0.14 -1.76 16 12 C 0.08 1.48 2.82 -67.71 -0.19 1.29 16 13 N -0.68 -14.03 4.81 -107.99 -0.52 -14.55 16 14 C 0.20 5.05 5.24 -4.97 -0.03 5.02 16 15 C -0.51 -14.36 9.32 -34.44 -0.32 -14.68 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.11 -1.70 5.16 -26.73 -0.14 -1.84 16 24 C -0.09 -1.30 4.08 -26.73 -0.11 -1.41 16 25 C -0.10 -1.33 9.14 -39.58 -0.36 -1.69 16 26 C -0.11 -1.29 8.71 -39.58 -0.34 -1.63 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 7.39 -51.92 -0.38 0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 34 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 35 H 0.12 1.08 6.49 -52.49 -0.34 0.74 16 36 H 0.37 3.51 7.33 45.56 0.33 3.84 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.65 7.60 -51.93 -0.39 1.26 16 39 H 0.06 1.17 7.45 -51.93 -0.39 0.78 16 40 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 41 H 0.03 0.65 7.80 -51.93 -0.40 0.24 16 42 H 0.33 6.48 8.18 -39.29 -0.32 6.16 16 43 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 44 H 0.03 0.76 7.43 -51.93 -0.39 0.38 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 47 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 48 H 0.09 1.29 5.85 -51.93 -0.30 0.99 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.13 1.64 6.16 -52.49 -0.32 1.31 16 51 H 0.12 1.19 7.10 -52.48 -0.37 0.82 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -30.51 389.45 -10.86 -41.37 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.21 Total: 8.03 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.31 Total: -23.73 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.22 Total: -40.76 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.40 Total: -7.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.51 -10.86 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816593178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.270 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds