Wall clock time and date at job start Tue Mar 31 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47297 * 2 1 4 4 C 1.50703 * 109.47062 * 119.99901 * 2 1 3 5 5 C 1.38233 * 119.99520 * 119.99964 * 4 2 1 6 6 C 1.38238 * 119.99704 * 180.02562 * 5 4 2 7 7 C 1.38231 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00093 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.46442 * 330.00019 * 8 7 6 10 10 C 1.53001 * 109.47316 * 89.99782 * 8 7 6 11 11 C 1.52997 * 109.47050 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46843 * 300.00019 * 11 10 8 13 13 N 1.46899 * 109.47079 * 300.00048 * 12 11 10 14 14 C 1.46901 * 111.00128 * 275.00147 * 13 12 11 15 15 C 1.50703 * 109.47102 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99688 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99853 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46874 * 89.99784 * 19 17 15 21 21 H 1.48498 * 109.47422 * 209.99961 * 19 17 15 22 22 H 1.48503 * 109.47018 * 330.00246 * 19 17 15 23 23 C 1.52998 * 109.46956 * 60.00175 * 12 11 10 24 24 C 1.52997 * 109.47201 * 299.99605 * 23 12 11 25 25 C 1.38234 * 120.00565 * 0.25719 * 7 6 5 26 26 C 1.38231 * 120.00204 * 299.97635 * 4 2 1 27 27 H 1.09000 * 109.47446 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46889 * 300.00331 * 1 2 3 29 29 H 1.09000 * 109.47142 * 59.99748 * 1 2 3 30 30 H 1.08996 * 109.46855 * 240.00068 * 2 1 3 31 31 H 1.08994 * 109.47183 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46775 * 300.00156 * 3 2 1 33 33 H 1.09002 * 109.46877 * 59.99568 * 3 2 1 34 34 H 1.07999 * 120.00221 * 359.97438 * 5 4 2 35 35 H 1.07995 * 120.00112 * 179.97438 * 6 5 4 36 36 H 0.96700 * 114.00311 * 60.00230 * 9 8 7 37 37 H 1.08999 * 109.47164 * 300.00418 * 10 8 7 38 38 H 1.08997 * 109.47124 * 60.00119 * 10 8 7 39 39 H 1.08997 * 109.46932 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.47549 * 59.99780 * 11 10 8 41 41 H 1.08997 * 109.46829 * 180.02562 * 12 11 10 42 42 H 1.00896 * 111.00363 * 151.04511 * 13 12 11 43 43 H 1.08997 * 109.47268 * 300.00122 * 14 13 12 44 44 H 1.09006 * 109.46851 * 60.00127 * 14 13 12 45 45 H 0.97000 * 119.99561 * 180.02562 * 18 17 15 46 46 H 1.09009 * 109.46785 * 179.97438 * 23 12 11 47 47 H 1.08997 * 109.47329 * 60.00303 * 23 12 11 48 48 H 1.08997 * 109.47549 * 300.00564 * 24 23 12 49 49 H 1.08997 * 109.46932 * 180.02562 * 24 23 12 50 50 H 1.07995 * 120.00294 * 179.73101 * 25 7 6 51 51 H 1.08007 * 120.00135 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8343 1.1036 6 6 3.2874 -2.4863 2.2323 7 6 2.9535 -2.0140 3.4877 8 6 3.4548 -2.7251 4.7183 9 8 3.6125 -4.1165 4.4332 10 6 4.8030 -2.1339 5.1353 11 6 5.3123 -2.8563 6.3841 12 6 4.3043 -2.6801 7.5218 13 7 4.1421 -1.2499 7.8152 14 6 5.1785 -0.7825 8.7455 15 6 4.9805 0.6857 9.0217 16 1 4.1664 1.2183 8.5527 17 6 5.8392 1.3491 9.8723 18 7 6.8314 0.7007 10.4422 19 14 5.5941 3.1691 10.2142 20 1 4.6997 3.3363 11.3878 21 1 6.9076 3.8006 10.4989 22 1 4.9800 3.8173 9.0276 23 6 2.9562 -3.2713 7.1047 24 6 2.4470 -2.5490 5.8558 25 6 2.1548 -0.8929 3.6147 26 6 1.6988 -0.2379 2.4860 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.0876 -2.2035 0.1227 35 1 3.9079 -3.3646 2.1332 36 1 4.2388 -4.3035 3.7205 37 1 5.5211 -2.2597 4.3250 38 1 4.6828 -1.0726 5.3526 39 1 6.2725 -2.4348 6.6814 40 1 5.4326 -3.9175 6.1665 41 1 4.6673 -3.1944 8.4116 42 1 3.2195 -1.0569 8.1751 43 1 5.1076 -1.3410 9.6788 44 1 6.1620 -0.9390 8.3022 45 1 7.4352 1.1674 11.0409 46 1 2.2383 -3.1462 7.9154 47 1 3.0765 -4.3325 6.8870 48 1 2.3266 -1.4878 6.0735 49 1 1.4863 -2.9699 5.5590 50 1 1.8904 -0.5265 4.5956 51 1 1.0778 0.6403 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816593178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:08 Heat of formation + Delta-G solvation = -70.890082 kcal Electronic energy + Delta-G solvation = -27256.392935 eV Core-core repulsion = 23732.232285 eV Total energy + Delta-G solvation = -3524.160650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41121 -39.75145 -37.58429 -35.90522 -35.24944 -33.59911 -32.06827 -31.65032 -31.27131 -29.11946 -27.95921 -27.54326 -24.46631 -24.26783 -23.71202 -23.09011 -22.04639 -20.69421 -20.09107 -18.60208 -18.20246 -16.94556 -16.71660 -16.67349 -16.31510 -16.12311 -15.57382 -15.41817 -15.14706 -14.72794 -14.53415 -14.38920 -14.32412 -13.98612 -13.86790 -13.73194 -13.62650 -13.43224 -13.15946 -13.04534 -12.94582 -12.77871 -12.68094 -12.54873 -12.25401 -12.08474 -11.97124 -11.92857 -11.73048 -11.64598 -11.58135 -11.42067 -11.15175 -10.99022 -10.67830 -10.59263 -9.75804 -9.35817 -9.03588 -8.21847 -6.32540 0.45322 0.56188 1.40133 1.41806 1.53410 2.39751 2.84522 3.11605 3.45129 3.51436 3.72533 3.76760 3.86032 3.88331 3.97352 4.18636 4.23601 4.31920 4.35460 4.40019 4.43301 4.52750 4.56008 4.62409 4.68077 4.74554 4.78889 4.82501 4.90055 4.99590 5.01500 5.08337 5.08904 5.10415 5.17447 5.20898 5.24794 5.27289 5.31632 5.35095 5.39120 5.40474 5.41074 5.54901 5.60676 5.65573 5.77642 5.80745 6.05754 6.16179 6.50804 6.77031 6.88644 6.93721 7.38580 8.89886 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003349 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.031306 B = 8359.395839 C = 9974.692043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.117 4.117 8 C 0.192 3.808 9 O -0.557 6.557 10 C -0.117 4.117 11 C -0.094 4.094 12 C 0.081 3.919 13 N -0.671 5.671 14 C 0.213 3.787 15 C -0.531 4.531 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.122 4.122 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.383 0.617 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.015 0.985 42 H 0.332 0.668 43 H -0.047 1.047 44 H -0.003 1.003 45 H 0.264 0.736 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.122 0.878 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -5.854 -22.348 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.085 4.085 5 C -0.142 4.142 6 C -0.136 4.136 7 C -0.117 4.117 8 C 0.151 3.849 9 O -0.365 6.365 10 C -0.155 4.155 11 C -0.132 4.132 12 C -0.029 4.029 13 N -0.302 5.302 14 C 0.085 3.915 15 C -0.569 4.569 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.140 4.140 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.033 0.967 42 H 0.150 0.850 43 H -0.029 1.029 44 H 0.015 0.985 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.139 0.861 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.472 -5.689 -22.319 25.732 hybrid contribution 0.646 0.533 1.296 1.543 sum -10.826 -5.155 -21.023 24.202 Atomic orbital electron populations 1.21844 0.93803 1.01912 1.02383 1.20159 0.96358 0.96005 0.94741 1.21861 1.00853 0.95080 1.02366 1.20130 0.97497 0.95850 0.95039 1.21268 0.98164 0.95632 0.99088 1.21088 1.00427 1.00473 0.91563 1.20537 0.98737 0.96971 0.95499 1.19732 0.93959 0.80335 0.90876 1.86535 1.67585 1.23134 1.59277 1.21907 0.96049 1.00870 0.96708 1.21336 0.96963 1.00105 0.94787 1.21541 0.96682 0.88597 0.96108 1.60595 1.06190 1.14943 1.48508 1.19172 0.90652 0.94141 0.87513 1.21555 1.13533 0.95428 1.26362 0.91648 1.25952 0.94700 1.03594 0.95559 1.70102 1.17534 1.38451 1.31561 0.85360 0.77509 0.78803 0.78795 1.19696 1.20867 1.18804 1.21547 0.94797 1.00305 0.97536 1.21431 0.97161 1.01344 0.92925 1.21238 0.97782 0.95628 0.99309 1.21115 1.00657 1.00160 0.92027 0.92879 0.92836 0.91107 0.89549 0.93236 0.91029 0.92930 0.84185 0.84423 0.76747 0.91791 0.91850 0.94871 0.90540 0.96742 0.85040 1.02910 0.98464 0.92733 0.91822 0.90426 0.90196 0.91282 0.86060 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.01 71.98 0.65 -1.20 16 2 C -0.05 -0.79 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -2.07 9.01 71.98 0.65 -1.42 16 4 C -0.09 -1.64 4.78 -19.87 -0.09 -1.74 16 5 C -0.12 -2.32 9.67 22.27 0.22 -2.10 16 6 C -0.12 -2.40 9.32 22.27 0.21 -2.20 16 7 C -0.12 -2.86 4.84 -19.86 -0.10 -2.96 16 8 C 0.19 4.95 0.84 -11.54 -0.01 4.94 16 9 O -0.56 -12.96 11.36 -148.98 -1.69 -14.66 16 10 C -0.12 -3.56 4.74 30.59 0.15 -3.42 16 11 C -0.09 -3.17 5.39 30.60 0.16 -3.01 16 12 C 0.08 2.94 2.82 44.92 0.13 3.07 16 13 N -0.67 -28.67 4.81 -495.56 -2.39 -31.05 16 14 C 0.21 11.60 5.24 85.56 0.45 12.04 16 15 C -0.53 -30.49 9.32 25.60 0.24 -30.25 16 16 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 19 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.10 -3.04 5.16 30.59 0.16 -2.88 16 24 C -0.09 -2.49 4.08 30.59 0.12 -2.37 16 25 C -0.12 -3.06 9.14 22.27 0.20 -2.85 16 26 C -0.12 -2.68 8.71 22.27 0.19 -2.48 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.74 7.39 -2.38 -0.02 0.72 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.06 7.88 -2.39 -0.02 1.04 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.81 7.39 -2.39 -0.02 0.79 16 34 H 0.14 1.92 7.95 -2.91 -0.02 1.90 16 35 H 0.14 2.12 6.49 -2.91 -0.02 2.10 16 36 H 0.38 6.21 7.33 -74.06 -0.54 5.67 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.31 7.60 -2.39 -0.02 2.30 16 39 H 0.03 1.29 7.45 -2.39 -0.02 1.28 16 40 H 0.08 2.26 7.68 -2.39 -0.02 2.25 16 41 H 0.01 0.59 7.80 -2.39 -0.02 0.57 16 42 H 0.33 13.52 8.18 -89.70 -0.73 12.79 16 43 H -0.05 -2.78 8.05 -2.39 -0.02 -2.79 16 44 H 0.00 -0.16 7.43 -2.38 -0.02 -0.18 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.06 1.77 8.12 -2.38 -0.02 1.75 16 47 H 0.08 2.16 7.68 -2.39 -0.02 2.15 16 48 H 0.08 2.33 5.85 -2.39 -0.01 2.32 16 49 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.12 3.13 6.16 -2.91 -0.02 3.12 16 51 H 0.13 2.48 7.10 -2.91 -0.02 2.46 16 Total: -1.00 -66.73 389.45 1.62 -65.11 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.36 Total: 30.27 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 3.75 Total: -39.20 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.10 Total: -88.30 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.69 Total: -14.66 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.73 1.62 -65.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816593178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.781 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds