Wall clock time and date at job start Tue Mar 31 2020 11:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.92691 * 2 1 4 4 C 1.38114 * 120.07029 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.93155 * 359.97438 * 4 3 2 6 6 N 1.39923 * 120.07131 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99948 * 186.70903 * 6 5 4 8 8 C 1.53009 * 109.46989 * 83.28184 * 7 6 5 9 9 C 1.53003 * 109.46889 * 65.50377 * 8 7 6 10 10 C 1.53000 * 109.47044 * 185.49890 * 8 7 6 11 11 C 1.34771 * 119.99959 * 6.70707 * 6 5 4 12 12 O 1.21288 * 120.00423 * 354.73621 * 11 6 5 13 13 C 1.50702 * 120.00019 * 174.73733 * 11 6 5 14 14 C 1.52996 * 109.47388 * 185.15889 * 13 11 6 15 15 C 1.53000 * 109.47298 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46993 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.46778 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99433 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00490 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99359 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47365 * 60.00313 * 21 19 17 23 23 H 1.48505 * 109.46677 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47313 * 299.99558 * 21 19 17 25 25 C 1.38872 * 119.85711 * 0.24704 * 5 4 3 26 26 C 1.38116 * 119.93031 * 359.52312 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00532 * 1 2 3 28 28 H 1.09011 * 109.46640 * 209.99819 * 1 2 3 29 29 H 1.08991 * 109.47560 * 329.99760 * 1 2 3 30 30 H 1.07997 * 119.96592 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03463 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47654 * 203.28314 * 7 6 5 33 33 H 1.08997 * 109.47530 * 323.28865 * 7 6 5 34 34 H 1.08989 * 109.47206 * 305.50180 * 8 7 6 35 35 H 1.09004 * 109.46687 * 184.76136 * 9 8 7 36 36 H 1.09003 * 109.46794 * 304.76394 * 9 8 7 37 37 H 1.09002 * 109.47188 * 64.76019 * 9 8 7 38 38 H 1.09003 * 109.46967 * 60.00289 * 10 8 7 39 39 H 1.08995 * 109.47366 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.47051 * 300.00331 * 10 8 7 41 41 H 1.09006 * 109.47206 * 305.16141 * 13 11 6 42 42 H 1.09007 * 109.47157 * 65.15614 * 13 11 6 43 43 H 1.09002 * 109.46922 * 299.99853 * 14 13 11 44 44 H 1.08993 * 109.47063 * 59.99709 * 14 13 11 45 45 H 1.09002 * 109.46950 * 299.99758 * 15 14 13 46 46 H 1.09000 * 109.47071 * 60.00062 * 15 14 13 47 47 H 1.09002 * 109.47028 * 299.99653 * 16 15 14 48 48 H 1.09000 * 109.47207 * 60.00089 * 16 15 14 49 49 H 0.97002 * 120.00104 * 180.02562 * 20 19 17 50 50 H 1.08005 * 120.03592 * 179.75265 * 25 5 4 51 51 H 1.07991 * 119.96889 * 180.22870 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0002 -0.0005 6 7 5.6731 0.0003 -0.0016 7 6 6.4056 -1.2598 -0.1498 8 6 6.5133 -1.6155 -1.6341 9 6 7.3758 -0.5722 -2.3472 10 6 7.1560 -2.9960 -1.7823 11 6 6.3470 1.1595 0.1337 12 8 5.7445 2.2118 0.1604 13 6 7.8494 1.1484 0.2517 14 6 8.3502 2.5686 0.5222 15 6 9.8755 2.5574 0.6414 16 6 10.3763 3.9775 0.9125 17 6 11.8787 3.9663 1.0305 18 1 12.4219 3.0391 0.9234 19 6 12.5596 5.1400 1.2754 20 7 11.8981 6.2690 1.4064 21 14 14.4218 5.1260 1.4224 22 1 15.0146 4.6247 0.1565 23 1 14.9078 6.5044 1.6854 24 1 14.8233 4.2380 2.5428 25 6 3.5781 -1.2017 -0.0052 26 6 2.1970 -1.1984 0.0002 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 7.4051 -1.1508 0.2711 33 1 5.8743 -2.0530 0.3761 34 1 5.5179 -1.6286 -2.0777 35 1 7.3833 -0.7774 -3.4178 36 1 6.9643 0.4215 -2.1706 37 1 8.3943 -0.6176 -1.9614 38 1 6.5416 -3.7393 -1.2742 39 1 7.2332 -3.2493 -2.8396 40 1 8.1516 -2.9829 -1.3386 41 1 8.1445 0.4963 1.0739 42 1 8.2842 0.7806 -0.6777 43 1 8.0552 3.2206 -0.3000 44 1 7.9155 2.9363 1.4515 45 1 10.1710 1.9053 1.4633 46 1 10.3100 2.1898 -0.2883 47 1 10.0809 4.6300 0.0908 48 1 9.9419 4.3447 1.8423 49 1 12.3772 7.0947 1.5782 50 1 4.1165 -2.1380 -0.0092 51 1 1.6553 -2.1326 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837070240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:29 Heat of formation + Delta-G solvation = -30.961692 kcal Electronic energy + Delta-G solvation = -26559.693340 eV Core-core repulsion = 23037.264114 eV Total energy + Delta-G solvation = -3522.429225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19598 -38.75857 -37.28827 -35.16609 -34.37953 -32.74865 -31.88115 -31.00532 -29.81416 -27.53998 -27.21915 -26.58981 -25.24039 -22.86447 -22.59431 -21.26117 -20.87925 -20.02343 -19.33588 -17.46237 -17.22117 -16.33167 -16.15583 -15.82467 -15.04139 -14.78586 -14.62407 -14.43461 -14.22974 -14.02734 -13.92153 -13.70240 -13.46370 -13.04768 -12.83356 -12.66689 -12.49677 -12.36707 -12.34874 -12.02534 -11.83193 -11.69907 -11.62427 -11.54073 -11.33921 -11.14879 -11.01024 -10.93644 -10.53490 -10.51956 -10.41222 -10.10274 -9.62797 -9.38774 -9.15881 -9.00485 -8.98426 -8.30752 -7.88596 -5.95508 -3.98181 1.18390 1.35937 2.53926 2.64113 3.34902 3.39433 3.41456 3.73397 4.29473 4.38957 4.48804 4.50941 4.71852 4.75447 4.79225 4.93251 5.00420 5.08249 5.13833 5.21212 5.23572 5.31605 5.34315 5.39370 5.39760 5.40329 5.47076 5.55426 5.57453 5.65454 5.73572 5.74487 5.79763 5.95482 5.99278 6.03893 6.09542 6.18527 6.25352 6.31626 6.47569 6.51856 6.58739 6.80271 6.97322 7.08719 7.16379 7.22470 7.73025 7.88901 8.04721 8.06083 8.47061 9.09217 9.65412 11.15751 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002486 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.981253 B =11260.570635 C =12559.369701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.167 4.167 5 C 0.154 3.846 6 N -0.554 5.554 7 C 0.100 3.900 8 C -0.114 4.114 9 C -0.156 4.156 10 C -0.145 4.145 11 C 0.516 3.484 12 O -0.508 6.508 13 C -0.146 4.146 14 C -0.104 4.104 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.161 4.161 26 C -0.099 4.099 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.184 0.816 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.261 0.739 50 H 0.123 0.877 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 -20.714 -5.434 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.186 4.186 5 C 0.059 3.941 6 N -0.276 5.276 7 C -0.022 4.022 8 C -0.133 4.133 9 C -0.213 4.213 10 C -0.203 4.203 11 C 0.308 3.692 12 O -0.384 6.384 13 C -0.185 4.185 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.182 4.182 26 C -0.118 4.118 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.200 0.800 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.468 -19.941 -5.371 28.381 hybrid contribution 0.994 -0.162 0.087 1.010 sum -18.474 -20.103 -5.285 27.809 Atomic orbital electron populations 1.20722 0.91525 1.02414 1.01925 1.19901 0.95943 0.93369 1.02948 1.21078 0.93998 0.97332 0.99159 1.22843 0.94523 1.00401 1.00865 1.18038 0.82076 0.94588 0.99372 1.45677 1.04214 1.08603 1.69125 1.21973 0.97907 0.85220 0.97123 1.21522 1.00647 0.96030 0.95121 1.22029 0.99813 0.98767 1.00657 1.21781 1.00939 0.95297 1.02292 1.21323 0.91158 0.82170 0.74564 1.90335 1.68598 1.31219 1.48239 1.22102 0.89462 1.02461 1.04500 1.21487 0.97586 0.92523 1.02633 1.21642 0.91687 1.01309 1.00062 1.19089 0.95447 0.90098 0.97034 1.21235 0.92338 0.93648 1.48706 0.92814 1.25040 0.98298 0.95699 0.95521 1.69959 1.35515 0.98604 1.49354 0.86674 0.85902 0.76960 0.78534 1.20283 1.21321 1.20291 1.20781 0.94455 0.96245 1.06682 1.20717 0.93218 0.97404 1.00420 0.91614 0.91941 0.91784 0.86048 0.79995 0.88609 0.89708 0.90589 0.92230 0.92474 0.91718 0.92529 0.92114 0.92073 0.88982 0.88004 0.91545 0.91809 0.93466 0.93429 0.96571 0.96601 0.92973 0.85901 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.12 -1.23 5.88 -104.59 -0.62 -1.85 16 3 C -0.10 -1.14 9.69 -39.61 -0.38 -1.52 16 4 C -0.17 -2.30 9.05 -39.39 -0.36 -2.66 16 5 C 0.15 1.91 6.46 -83.70 -0.54 1.37 16 6 N -0.55 -6.44 2.48 -113.46 -0.28 -6.72 16 7 C 0.10 0.82 4.34 -4.04 -0.02 0.80 16 8 C -0.11 -0.86 3.09 -90.61 -0.28 -1.14 16 9 C -0.16 -1.38 7.68 37.16 0.29 -1.10 16 10 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 11 C 0.52 7.28 6.23 -10.99 -0.07 7.21 16 12 O -0.51 -8.79 12.38 5.55 0.07 -8.72 16 13 C -0.15 -1.92 4.01 -27.88 -0.11 -2.03 16 14 C -0.10 -1.82 4.52 -26.73 -0.12 -1.94 16 15 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.16 -1.64 9.12 -39.39 -0.36 -2.00 16 26 C -0.10 -0.95 9.69 -39.61 -0.38 -1.34 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.39 8.08 -51.92 -0.42 -0.03 16 29 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.18 2.90 4.53 -56.23 -0.25 2.64 16 32 H 0.10 0.70 6.10 -51.93 -0.32 0.38 16 33 H 0.08 0.57 6.33 -51.93 -0.33 0.24 16 34 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.63 5.98 -51.93 -0.31 0.32 16 37 H 0.06 0.54 7.12 -51.93 -0.37 0.17 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 1.04 7.37 -51.93 -0.38 0.66 16 42 H 0.10 1.18 4.95 -51.93 -0.26 0.92 16 43 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.12 0.98 6.17 -52.48 -0.32 0.65 16 51 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -32.80 397.04 -10.28 -43.08 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.83 Total: -0.94 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -2.94 Total: -22.79 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.45 Total: -33.43 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.80 -10.28 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837070240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.119 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds