Wall clock time and date at job start Tue Mar 31 2020 11:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.92691 * 2 1 4 4 C 1.38114 * 120.07029 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.93155 * 359.97438 * 4 3 2 6 6 N 1.39923 * 120.07131 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99948 * 186.70903 * 6 5 4 8 8 C 1.53009 * 109.46989 * 83.28184 * 7 6 5 9 9 C 1.53003 * 109.46889 * 65.50377 * 8 7 6 10 10 C 1.53000 * 109.47044 * 185.49890 * 8 7 6 11 11 C 1.34771 * 119.99959 * 6.70707 * 6 5 4 12 12 O 1.21288 * 120.00423 * 354.73621 * 11 6 5 13 13 C 1.50702 * 120.00019 * 174.73733 * 11 6 5 14 14 C 1.52996 * 109.47388 * 185.15889 * 13 11 6 15 15 C 1.53000 * 109.47298 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46993 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.46778 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99433 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00490 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99359 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47365 * 60.00313 * 21 19 17 23 23 H 1.48505 * 109.46677 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47313 * 299.99558 * 21 19 17 25 25 C 1.38872 * 119.85711 * 0.24704 * 5 4 3 26 26 C 1.38116 * 119.93031 * 359.52312 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00532 * 1 2 3 28 28 H 1.09011 * 109.46640 * 209.99819 * 1 2 3 29 29 H 1.08991 * 109.47560 * 329.99760 * 1 2 3 30 30 H 1.07997 * 119.96592 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03463 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47654 * 203.28314 * 7 6 5 33 33 H 1.08997 * 109.47530 * 323.28865 * 7 6 5 34 34 H 1.08989 * 109.47206 * 305.50180 * 8 7 6 35 35 H 1.09004 * 109.46687 * 184.76136 * 9 8 7 36 36 H 1.09003 * 109.46794 * 304.76394 * 9 8 7 37 37 H 1.09002 * 109.47188 * 64.76019 * 9 8 7 38 38 H 1.09003 * 109.46967 * 60.00289 * 10 8 7 39 39 H 1.08995 * 109.47366 * 180.02562 * 10 8 7 40 40 H 1.09002 * 109.47051 * 300.00331 * 10 8 7 41 41 H 1.09006 * 109.47206 * 305.16141 * 13 11 6 42 42 H 1.09007 * 109.47157 * 65.15614 * 13 11 6 43 43 H 1.09002 * 109.46922 * 299.99853 * 14 13 11 44 44 H 1.08993 * 109.47063 * 59.99709 * 14 13 11 45 45 H 1.09002 * 109.46950 * 299.99758 * 15 14 13 46 46 H 1.09000 * 109.47071 * 60.00062 * 15 14 13 47 47 H 1.09002 * 109.47028 * 299.99653 * 16 15 14 48 48 H 1.09000 * 109.47207 * 60.00089 * 16 15 14 49 49 H 0.97002 * 120.00104 * 180.02562 * 20 19 17 50 50 H 1.08005 * 120.03592 * 179.75265 * 25 5 4 51 51 H 1.07991 * 119.96889 * 180.22870 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0002 -0.0005 6 7 5.6731 0.0003 -0.0016 7 6 6.4056 -1.2598 -0.1498 8 6 6.5133 -1.6155 -1.6341 9 6 7.3758 -0.5722 -2.3472 10 6 7.1560 -2.9960 -1.7823 11 6 6.3470 1.1595 0.1337 12 8 5.7445 2.2118 0.1604 13 6 7.8494 1.1484 0.2517 14 6 8.3502 2.5686 0.5222 15 6 9.8755 2.5574 0.6414 16 6 10.3763 3.9775 0.9125 17 6 11.8787 3.9663 1.0305 18 1 12.4219 3.0391 0.9234 19 6 12.5596 5.1400 1.2754 20 7 11.8981 6.2690 1.4064 21 14 14.4218 5.1260 1.4224 22 1 15.0146 4.6247 0.1565 23 1 14.9078 6.5044 1.6854 24 1 14.8233 4.2380 2.5428 25 6 3.5781 -1.2017 -0.0052 26 6 2.1970 -1.1984 0.0002 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 7.4051 -1.1508 0.2711 33 1 5.8743 -2.0530 0.3761 34 1 5.5179 -1.6286 -2.0777 35 1 7.3833 -0.7774 -3.4178 36 1 6.9643 0.4215 -2.1706 37 1 8.3943 -0.6176 -1.9614 38 1 6.5416 -3.7393 -1.2742 39 1 7.2332 -3.2493 -2.8396 40 1 8.1516 -2.9829 -1.3386 41 1 8.1445 0.4963 1.0739 42 1 8.2842 0.7806 -0.6777 43 1 8.0552 3.2206 -0.3000 44 1 7.9155 2.9363 1.4515 45 1 10.1710 1.9053 1.4633 46 1 10.3100 2.1898 -0.2883 47 1 10.0809 4.6300 0.0908 48 1 9.9419 4.3447 1.8423 49 1 12.3772 7.0947 1.5782 50 1 4.1165 -2.1380 -0.0092 51 1 1.6553 -2.1326 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837070240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:28 Heat of formation + Delta-G solvation = -47.035397 kcal Electronic energy + Delta-G solvation = -26560.390348 eV Core-core repulsion = 23037.264114 eV Total energy + Delta-G solvation = -3523.126233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14099 -39.66996 -38.11157 -36.75801 -35.27705 -34.62148 -32.84677 -31.85241 -31.38821 -28.38073 -28.04200 -27.52978 -26.60155 -24.30332 -23.59937 -22.35687 -21.72954 -21.52279 -20.26643 -18.49003 -18.26991 -18.14716 -17.36161 -16.60416 -16.51295 -15.95391 -15.78316 -15.64637 -15.07399 -14.85723 -14.69192 -14.61028 -14.52354 -14.31760 -14.01419 -13.76768 -13.55936 -13.38507 -13.22470 -13.05345 -12.95037 -12.90248 -12.74600 -12.55330 -12.37938 -12.30698 -12.17630 -12.07929 -12.01778 -11.82987 -11.58409 -11.38336 -11.31853 -11.08899 -10.89340 -10.54401 -10.28080 -9.85577 -8.74980 -8.18411 -6.30631 0.30870 0.49906 1.40340 1.44394 1.52153 1.52653 1.75056 2.41998 2.88423 3.14268 3.36348 3.74673 3.89719 3.92462 3.98318 4.05791 4.06732 4.14278 4.20162 4.32944 4.39377 4.51085 4.54831 4.59273 4.61906 4.68293 4.73857 4.74852 4.81183 4.85491 4.87081 4.90898 4.99680 5.06078 5.13090 5.14919 5.18099 5.25578 5.30116 5.33240 5.35361 5.37935 5.47724 5.50067 5.55656 5.65011 5.75684 5.77197 5.87632 6.19238 6.25017 6.30548 6.87631 7.02539 7.38928 8.93630 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002486 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.981253 B =11260.570635 C =12559.369701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.199 4.199 5 C 0.133 3.867 6 N -0.546 5.546 7 C 0.091 3.909 8 C -0.106 4.106 9 C -0.158 4.158 10 C -0.141 4.141 11 C 0.510 3.490 12 O -0.553 6.553 13 C -0.134 4.134 14 C -0.095 4.095 15 C -0.094 4.094 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.154 4.154 26 C -0.098 4.098 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.061 0.939 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.263 0.737 50 H 0.152 0.848 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 -24.914 -5.494 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.131 4.131 4 C -0.219 4.219 5 C 0.039 3.961 6 N -0.267 5.267 7 C -0.030 4.030 8 C -0.125 4.125 9 C -0.216 4.216 10 C -0.198 4.198 11 C 0.303 3.697 12 O -0.433 6.433 13 C -0.173 4.173 14 C -0.134 4.134 15 C -0.131 4.131 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.174 4.174 26 C -0.117 4.117 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.002 0.998 48 H 0.003 0.997 49 H 0.071 0.929 50 H 0.169 0.831 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.077 -24.198 -5.441 31.290 hybrid contribution 0.760 1.160 0.080 1.389 sum -18.317 -23.038 -5.361 29.916 Atomic orbital electron populations 1.20770 0.89407 1.03416 1.02822 1.20265 0.97566 0.92925 1.01607 1.21206 0.93438 0.98612 0.99850 1.22696 0.95614 1.00250 1.03322 1.18217 0.82469 0.94995 1.00434 1.45673 1.04191 1.08932 1.67932 1.22331 0.98559 0.84142 0.97923 1.21451 1.00034 0.96724 0.94323 1.22053 1.00402 0.97830 1.01266 1.21752 1.01339 0.94064 1.02669 1.21451 0.91473 0.82450 0.74373 1.90365 1.69407 1.33042 1.50441 1.21974 0.89046 0.99643 1.06593 1.21260 0.95839 0.95359 1.00902 1.21431 0.93155 0.97341 1.01216 1.19047 0.95099 0.93397 0.94242 1.21718 0.93417 0.94331 1.48429 0.91465 1.26100 1.04231 0.95200 0.94941 1.70125 1.37909 0.99436 1.50385 0.85441 0.78767 0.77181 0.79294 1.18870 1.21178 1.18855 1.21094 0.94905 0.96230 1.05148 1.21159 0.93217 0.98401 0.98880 0.90654 0.90148 0.91632 0.85772 0.82951 0.87278 0.87389 0.91517 0.91947 0.95162 0.90857 0.91046 0.92067 0.91447 0.86118 0.85963 0.93719 0.93722 0.91878 0.91992 0.99782 0.99732 0.92877 0.83084 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.23 0.71 -0.65 16 2 C -0.12 -2.34 5.88 -19.84 -0.12 -2.46 16 3 C -0.11 -2.75 9.69 22.25 0.22 -2.53 16 4 C -0.20 -5.86 9.05 22.39 0.20 -5.66 16 5 C 0.13 3.29 6.46 38.15 0.25 3.54 16 6 N -0.55 -12.39 2.48 -631.25 -1.57 -13.96 16 7 C 0.09 1.24 4.34 86.38 0.37 1.62 16 8 C -0.11 -1.35 3.09 -10.79 -0.03 -1.39 16 9 C -0.16 -2.61 7.68 71.98 0.55 -2.06 16 10 C -0.14 -1.14 9.19 71.98 0.66 -0.48 16 11 C 0.51 14.85 6.23 87.66 0.55 15.40 16 12 O -0.55 -20.86 12.38 -3.05 -0.04 -20.90 16 13 C -0.13 -3.43 4.01 29.85 0.12 -3.31 16 14 C -0.10 -3.47 4.52 30.59 0.14 -3.33 16 15 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 16 C 0.02 1.06 4.97 29.85 0.15 1.21 16 17 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 20 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 21 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.15 -2.77 9.12 22.39 0.20 -2.56 16 26 C -0.10 -1.62 9.69 22.25 0.22 -1.40 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.75 8.08 -2.38 -0.02 0.73 16 29 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.15 5.46 4.53 -62.18 -0.28 5.18 16 32 H 0.11 1.21 6.10 -2.39 -0.01 1.20 16 33 H 0.11 1.00 6.33 -2.39 -0.02 0.99 16 34 H 0.07 1.00 8.01 -2.39 -0.02 0.98 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.03 0.66 5.98 -2.39 -0.01 0.64 16 37 H 0.07 1.06 7.12 -2.39 -0.02 1.04 16 38 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 39 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.12 2.43 7.37 -2.38 -0.02 2.41 16 42 H 0.12 2.64 4.95 -2.38 -0.01 2.63 16 43 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.15 1.78 6.17 -2.91 -0.02 1.76 16 51 H 0.15 1.52 8.06 -2.92 -0.02 1.49 16 Total: -1.00 -75.93 397.04 6.37 -69.57 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.62 Total: 16.26 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 5.04 Total: -38.77 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.28 Total: -72.94 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.04 Total: -20.90 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.93 6.37 -69.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837070240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.530 kcal (2) G-P(sol) polarization free energy of solvation -75.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds