Wall clock time and date at job start Tue Mar 31 2020 11:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47035 * 2 1 4 4 C 1.50699 * 109.47449 * 240.00063 * 2 1 3 5 5 H 1.08004 * 119.99807 * 241.36478 * 4 2 1 6 6 C 1.37872 * 119.99835 * 61.35772 * 4 2 1 7 7 N 1.31524 * 120.00061 * 193.96480 * 6 4 2 8 8 Si 1.86796 * 120.00513 * 13.96640 * 6 4 2 9 9 H 1.48500 * 109.47171 * 84.55158 * 8 6 4 10 10 H 1.48491 * 109.47588 * 204.55560 * 8 6 4 11 11 H 1.48504 * 109.46810 * 324.55637 * 8 6 4 12 12 C 1.53001 * 109.47415 * 119.99706 * 2 1 3 13 13 N 1.46904 * 109.47097 * 300.00498 * 12 2 1 14 14 C 1.46895 * 110.99872 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.46934 * 179.97438 * 14 13 12 16 16 C 1.38286 * 120.01170 * 90.00363 * 15 14 13 17 17 C 1.37967 * 119.95914 * 180.10294 * 16 15 14 18 18 C 1.39143 * 120.21974 * 359.97438 * 17 16 15 19 19 C 1.38307 * 119.70464 * 359.91464 * 18 17 16 20 20 C 1.38105 * 120.00671 * 270.02119 * 15 14 13 21 21 C 1.50773 * 121.44917 * 180.27609 * 19 18 17 22 22 C 1.53077 * 109.64217 * 342.22906 * 21 19 18 23 23 C 1.53404 * 108.29119 * 48.21585 * 22 21 19 24 24 C 1.53001 * 109.68403 * 54.96957 * 23 22 21 25 25 C 1.53001 * 109.68506 * 175.52986 * 23 22 21 26 26 O 1.35844 * 118.50036 * 179.81923 * 18 17 16 27 27 H 1.09000 * 109.47322 * 309.31691 * 1 2 3 28 28 H 1.09004 * 109.47247 * 69.31944 * 1 2 3 29 29 H 1.09003 * 109.46816 * 189.31572 * 1 2 3 30 30 H 1.09002 * 109.47494 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47289 * 299.99884 * 3 2 1 32 32 H 1.09000 * 109.47629 * 60.00106 * 3 2 1 33 33 H 0.96989 * 120.00241 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47551 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47030 * 60.00099 * 12 2 1 36 36 H 1.00900 * 110.99813 * 303.94778 * 13 12 2 37 37 H 1.09005 * 109.47643 * 60.00159 * 14 13 12 38 38 H 1.09005 * 109.47333 * 299.99407 * 14 13 12 39 39 H 1.08001 * 120.01970 * 0.07163 * 16 15 14 40 40 H 1.08003 * 119.88685 * 180.02562 * 17 16 15 41 41 H 1.08002 * 119.84504 * 359.96715 * 20 15 14 42 42 H 1.09001 * 109.43404 * 222.18845 * 21 19 18 43 43 H 1.09000 * 109.43871 * 102.27673 * 21 19 18 44 44 H 1.09004 * 109.69507 * 167.91499 * 22 21 19 45 45 H 1.09000 * 109.69717 * 288.47195 * 22 21 19 46 46 H 1.09000 * 109.47157 * 60.00412 * 24 23 22 47 47 H 1.09007 * 109.47114 * 180.02562 * 24 23 22 48 48 H 1.08999 * 109.47296 * 299.99670 * 24 23 22 49 49 H 1.09000 * 109.46542 * 60.00184 * 25 23 22 50 50 H 1.09004 * 109.47027 * 179.97438 * 25 23 22 51 51 H 1.09000 * 109.46878 * 300.00194 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6350 -1.6012 -1.1314 6 6 1.7226 -0.2232 -2.4824 7 7 1.9163 -0.9723 -3.5460 8 14 1.0278 1.5007 -2.6684 9 1 2.1418 2.4818 -2.7081 10 1 0.2473 1.5867 -3.9287 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6703 15 6 1.5002 0.0423 4.8771 16 6 0.2831 -0.3101 5.4310 17 6 -0.1935 0.3671 6.5346 18 6 0.5468 1.4042 7.0935 19 6 1.7648 1.7531 6.5389 20 6 2.2383 1.0703 5.4299 21 6 2.6021 2.8661 7.1162 22 6 1.7344 3.7487 8.0170 23 6 0.9392 2.8381 8.9613 24 6 1.8989 1.9224 9.7237 25 6 0.1439 3.6913 9.9516 26 8 0.0427 2.0496 8.1773 27 1 -0.3634 0.6511 0.7950 28 1 -0.3634 0.3629 -0.9615 29 1 -0.3633 -1.0142 0.1664 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6987 -0.6294 -4.4268 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 1.8197 0.9436 2.4402 37 1 3.1108 -0.6952 3.6874 38 1 1.6570 -1.7225 3.6870 39 1 -0.2942 -1.1145 4.9998 40 1 -1.1440 0.0906 6.9665 41 1 3.1887 1.3435 4.9956 42 1 3.0134 3.4683 6.3061 43 1 3.4172 2.4407 7.7017 44 1 2.3696 4.4165 8.5989 45 1 1.0478 4.3346 7.4059 46 1 2.5937 2.5280 10.3057 47 1 1.3304 1.2768 10.3932 48 1 2.4564 1.3097 9.0153 49 1 -0.5452 4.3349 9.4048 50 1 -0.4200 3.0409 10.6204 51 1 0.8300 4.3057 10.5346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839163121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:53 Heat of formation + Delta-G solvation = -13.889505 kcal Electronic energy + Delta-G solvation = -26918.360709 eV Core-core repulsion = 23396.671789 eV Total energy + Delta-G solvation = -3521.688920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15239 -38.47112 -37.05354 -35.07994 -34.24635 -32.59355 -31.56713 -30.21383 -28.83385 -27.82992 -26.21863 -25.73871 -24.95937 -24.27119 -23.22789 -22.64874 -21.50943 -19.09376 -18.62804 -17.64908 -16.60432 -16.04311 -15.78200 -15.52644 -15.33217 -14.95274 -14.79240 -14.41405 -14.10537 -13.85890 -13.42564 -13.35563 -13.27982 -12.94930 -12.84534 -12.65812 -12.53710 -12.43054 -12.33103 -12.20892 -12.03874 -11.94112 -11.76849 -11.41446 -11.30539 -10.91035 -10.86136 -10.83368 -10.42272 -10.28154 -10.00816 -9.97440 -9.79188 -8.94356 -8.80649 -8.53920 -8.35212 -8.12044 -7.79685 -6.05917 -4.01390 1.31130 1.38452 3.01643 3.33376 3.43110 3.46797 3.66720 4.23024 4.31339 4.42373 4.46169 4.61491 4.67012 4.81675 4.93674 4.97681 5.08045 5.15973 5.16927 5.27269 5.27690 5.32115 5.34184 5.42517 5.44578 5.53720 5.63140 5.67764 5.73107 5.79811 5.86797 5.92109 5.99014 6.08037 6.14481 6.25452 6.28496 6.38398 6.49347 6.61430 6.70837 6.78428 6.79438 6.84291 6.97210 7.09902 7.39770 7.43371 7.52665 7.64375 7.86782 7.95968 8.57430 8.98827 9.60422 11.07545 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026571 B = 0.002524 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.508318 B =11091.141782 C =11376.256598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.041 3.959 3 C -0.149 4.149 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.245 1.245 12 C 0.084 3.916 13 N -0.685 5.685 14 C 0.099 3.901 15 C -0.103 4.103 16 C -0.064 4.064 17 C -0.151 4.151 18 C 0.130 3.870 19 C -0.162 4.162 20 C -0.080 4.080 21 C -0.077 4.077 22 C -0.147 4.147 23 C 0.112 3.888 24 C -0.175 4.175 25 C -0.138 4.138 26 O -0.311 6.311 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.336 0.664 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 8.260 28.181 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 C -0.206 4.206 4 C -0.549 4.549 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.171 1.171 12 C -0.044 4.044 13 N -0.317 5.317 14 C -0.030 4.030 15 C -0.104 4.104 16 C -0.083 4.083 17 C -0.170 4.170 18 C 0.085 3.915 19 C -0.163 4.163 20 C -0.099 4.099 21 C -0.114 4.114 22 C -0.184 4.184 23 C 0.074 3.926 24 C -0.232 4.232 25 C -0.195 4.195 26 O -0.226 6.226 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.053 7.900 28.052 29.162 hybrid contribution 0.910 1.254 -0.423 1.606 sum -0.143 9.154 27.629 29.106 Atomic orbital electron populations 1.22074 0.97431 0.99740 0.99224 1.18471 0.92927 0.91450 0.93175 1.22368 1.00279 0.99200 0.98789 1.20866 1.33534 1.12014 0.88525 0.91080 1.24979 0.94720 0.97337 0.95852 1.69965 1.48873 1.35973 0.98650 0.87309 0.79382 0.85581 0.76011 1.21662 1.23608 1.17118 1.21984 0.96010 0.97947 0.88484 1.60658 1.63785 1.06313 1.00905 1.20820 0.96560 0.97818 0.87758 1.19765 0.95464 0.97724 0.97412 1.20837 0.94809 0.98826 0.93834 1.20572 1.01363 0.96058 0.98990 1.18577 0.92825 0.92338 0.87752 1.19678 0.96550 1.00770 0.99269 1.20808 0.99473 0.94938 0.94699 1.20487 0.97148 0.94692 0.99063 1.22255 0.99640 0.98159 0.98389 1.21830 0.89796 0.90565 0.90381 1.22420 0.99599 1.00239 1.00973 1.21778 1.00508 0.99238 0.98016 1.86017 1.37698 1.61546 1.37321 0.94889 0.93803 0.94081 0.93599 0.94216 0.94754 0.92769 0.96102 0.91628 0.84492 0.95088 0.90481 0.85217 0.85529 0.86206 0.90166 0.90527 0.90018 0.90479 0.91100 0.91623 0.91476 0.91489 0.91452 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 7.55 37.15 0.28 -2.58 16 2 C 0.04 0.94 0.57 -155.66 -0.09 0.85 16 3 C -0.15 -3.22 7.36 37.16 0.27 -2.95 16 4 C -0.51 -14.16 8.62 -34.44 -0.30 -14.46 16 5 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 6 C 0.07 2.10 5.32 -17.82 -0.09 2.00 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 8 Si 0.88 22.17 22.79 -169.99 -3.87 18.30 16 9 H -0.29 -7.17 7.10 56.52 0.40 -6.77 16 10 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 11 H -0.25 -5.75 4.65 56.52 0.26 -5.49 16 12 C 0.08 1.65 4.57 -3.82 -0.02 1.64 16 13 N -0.68 -11.42 5.88 -115.05 -0.68 -12.10 16 14 C 0.10 1.39 5.81 -4.98 -0.03 1.36 16 15 C -0.10 -1.34 5.39 -104.65 -0.56 -1.90 16 16 C -0.06 -0.81 9.70 -39.66 -0.38 -1.20 16 17 C -0.15 -1.86 9.94 -39.34 -0.39 -2.25 16 18 C 0.13 1.60 6.02 -39.22 -0.24 1.36 16 19 C -0.16 -1.86 5.17 -104.44 -0.54 -2.40 16 20 C -0.08 -0.97 9.32 -39.51 -0.37 -1.34 16 21 C -0.08 -0.67 5.21 -27.81 -0.14 -0.82 16 22 C -0.15 -1.14 5.10 -26.48 -0.14 -1.27 16 23 C 0.11 0.93 1.13 -90.41 -0.10 0.83 16 24 C -0.18 -1.29 8.15 37.16 0.30 -0.98 16 25 C -0.14 -0.87 8.88 37.16 0.33 -0.54 16 26 O -0.31 -3.59 9.67 -19.25 -0.19 -3.78 16 27 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 28 H 0.04 1.04 4.30 -51.93 -0.22 0.81 16 29 H 0.04 0.91 8.12 -51.93 -0.42 0.48 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 32 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.34 5.53 6.76 -39.29 -0.27 5.27 16 37 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.59 7.00 -51.93 -0.36 0.23 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.57 5.88 -51.93 -0.31 0.27 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -30.80 379.94 -9.34 -40.14 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.90 Total: 3.15 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.21 Total: -24.65 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.10 Total: -38.89 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.19 Total: -3.78 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.87 Total: 18.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.80 -9.34 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.252 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds