Wall clock time and date at job start Tue Mar 31 2020 11:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38167 * 119.97089 * 2 1 4 4 C 1.38713 * 119.93906 * 179.75187 * 3 2 1 5 5 O 1.35903 * 120.04821 * 180.27049 * 4 3 2 6 6 C 1.38749 * 119.89416 * 0.53959 * 4 3 2 7 7 C 1.50697 * 120.02929 * 179.68475 * 6 4 3 8 8 N 1.46904 * 109.46833 * 75.97640 * 7 6 4 9 9 C 1.46847 * 111.00157 * 75.71835 * 8 7 6 10 10 C 1.53035 * 109.52398 * 185.83646 * 9 8 7 11 11 C 1.53119 * 109.28029 * 300.82359 * 10 9 8 12 12 C 1.53116 * 109.16199 * 57.64886 * 11 10 9 13 13 H 1.08998 * 109.50383 * 62.29533 * 12 11 10 14 14 C 1.50701 * 109.50089 * 182.40576 * 12 11 10 15 15 H 1.08000 * 119.99784 * 120.00286 * 14 12 11 16 16 C 1.37870 * 120.00295 * 300.00346 * 14 12 11 17 17 N 1.31519 * 120.00250 * 359.97438 * 16 14 12 18 18 Si 1.86810 * 120.00120 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46901 * 59.99913 * 18 16 14 20 20 H 1.48501 * 109.46911 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46853 * 300.00109 * 18 16 14 22 22 C 1.46857 * 110.99692 * 199.92554 * 8 7 6 23 23 C 1.38123 * 119.94189 * 359.70835 * 6 4 3 24 24 C 1.38245 * 119.97569 * 180.26930 * 2 1 3 25 25 C 1.50700 * 119.94288 * 0.02562 * 24 2 1 26 26 C 1.53000 * 109.47486 * 124.23192 * 25 24 2 27 27 C 1.53001 * 109.47201 * 244.23551 * 25 24 2 28 28 H 1.08998 * 109.47349 * 263.87911 * 1 2 3 29 29 H 1.09004 * 109.47276 * 143.88340 * 1 2 3 30 30 H 1.08994 * 109.47236 * 23.88227 * 1 2 3 31 31 H 1.07993 * 120.02699 * 359.97438 * 3 2 1 32 32 H 0.96698 * 114.00136 * 275.27399 * 5 4 3 33 33 H 1.09004 * 109.47004 * 195.97021 * 7 6 4 34 34 H 1.09001 * 109.47559 * 315.97392 * 7 6 4 35 35 H 1.08997 * 109.45903 * 305.85120 * 9 8 7 36 36 H 1.09001 * 109.46538 * 65.82082 * 9 8 7 37 37 H 1.09000 * 109.50087 * 60.76124 * 10 9 8 38 38 H 1.08998 * 109.50439 * 180.87709 * 10 9 8 39 39 H 1.08999 * 109.52609 * 177.56085 * 11 10 9 40 40 H 1.09004 * 109.51504 * 297.68366 * 11 10 9 41 41 H 0.96993 * 120.00189 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46088 * 294.17919 * 22 8 7 43 43 H 1.09001 * 109.45984 * 54.14375 * 22 8 7 44 44 H 1.07995 * 119.97063 * 179.97438 * 23 6 4 45 45 H 1.09004 * 109.46977 * 4.23530 * 25 24 2 46 46 H 1.09004 * 109.46737 * 60.00191 * 26 25 24 47 47 H 1.08997 * 109.47515 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.47551 * 300.00638 * 26 25 24 49 49 H 1.09001 * 109.47034 * 60.00022 * 27 25 24 50 50 H 1.09007 * 109.46812 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.46929 * 300.00139 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1961 0.0052 5 8 4.2654 2.3722 0.0108 6 6 4.2752 -0.0071 -0.0009 7 6 5.7821 -0.0114 -0.0025 8 7 6.2741 0.3167 1.3423 9 6 6.1283 -0.8284 2.2500 10 6 6.5130 -0.4075 3.6701 11 6 7.9610 0.0904 3.6751 12 6 8.0966 1.2513 2.6859 13 1 7.4607 2.0772 3.0047 14 6 9.5318 1.7089 2.6410 15 1 10.0813 1.6723 1.7120 16 6 10.1432 2.1741 3.7857 17 7 9.4739 2.2191 4.9170 18 14 11.9221 2.7420 3.7298 19 1 12.0522 3.8681 2.7705 20 1 12.3408 3.1916 5.0817 21 1 12.7872 1.6169 3.2928 22 6 7.6661 0.7824 1.2943 23 6 3.5805 -1.2009 -0.0061 24 6 2.1977 -1.1975 -0.0056 25 6 1.4423 -2.5015 -0.0123 26 6 1.8893 -3.3438 -1.2089 27 6 1.7287 -3.2635 1.2831 28 1 -0.3634 -0.1096 1.0218 29 1 -0.3634 -0.8302 -0.6058 30 1 -0.3633 0.9396 -0.4160 31 1 1.6572 2.1321 -0.0004 32 1 4.3956 2.7555 -0.8674 33 1 6.1423 -0.9992 -0.2901 34 1 6.1470 0.7296 -0.7137 35 1 5.0932 -1.1699 2.2403 36 1 6.7807 -1.6375 1.9217 37 1 5.8521 0.3922 4.0043 38 1 6.4196 -1.2617 4.3407 39 1 8.2254 0.4318 4.6759 40 1 8.6261 -0.7210 3.3794 41 1 9.9040 2.5467 5.7223 42 1 8.3112 -0.0343 0.9704 43 1 7.7478 1.6106 0.5904 44 1 4.1178 -2.1377 -0.0113 45 1 0.3734 -2.3018 -0.0877 46 1 2.9582 -3.5435 -1.1336 47 1 1.3433 -4.2871 -1.2135 48 1 1.6853 -2.8009 -2.1319 49 1 1.4102 -2.6635 2.1356 50 1 1.1820 -4.2065 1.2784 51 1 2.7976 -3.4632 1.3584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:24 Heat of formation + Delta-G solvation = -59.103836 kcal Electronic energy + Delta-G solvation = -27556.352313 eV Core-core repulsion = 24032.702753 eV Total energy + Delta-G solvation = -3523.649560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25057 -39.63197 -38.38495 -35.99918 -35.31568 -34.21927 -32.78010 -31.65613 -29.89552 -28.98118 -27.93163 -26.91892 -25.79373 -24.32262 -23.53012 -23.03887 -21.98497 -20.57864 -20.34480 -18.66283 -18.38826 -17.41132 -16.90109 -16.40546 -16.29682 -15.90477 -15.53504 -15.27237 -14.98532 -14.85648 -14.67801 -14.61258 -14.40443 -14.06059 -13.80504 -13.74254 -13.51372 -13.39582 -13.12590 -13.06866 -12.85105 -12.78365 -12.66139 -12.56639 -12.40796 -12.27091 -11.90575 -11.81928 -11.74336 -11.68301 -11.45500 -11.41742 -11.12770 -10.84453 -10.67595 -10.37735 -9.60895 -9.15517 -9.04759 -8.07060 -6.22053 0.37191 0.43364 1.40988 1.43029 1.50583 2.42756 2.64199 3.19290 3.26074 3.44128 3.78763 3.82712 3.90479 4.14795 4.16742 4.22027 4.25421 4.36843 4.37460 4.44286 4.55328 4.58527 4.60912 4.64436 4.72312 4.77797 4.84762 4.87724 4.88854 4.94445 4.96262 4.99793 5.04818 5.08124 5.15757 5.18166 5.20490 5.31959 5.36241 5.38279 5.43388 5.49819 5.52933 5.62651 5.67487 5.79358 5.96969 6.04139 6.13377 6.22234 6.38620 6.47377 6.90756 7.01733 7.45741 8.97555 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.003071 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.702731 B = 9116.082496 C = 9609.420412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.161 4.161 4 C 0.114 3.886 5 O -0.504 6.504 6 C -0.114 4.114 7 C 0.104 3.896 8 N -0.536 5.536 9 C 0.072 3.928 10 C -0.109 4.109 11 C -0.101 4.101 12 C 0.056 3.944 13 H -0.010 1.010 14 C -0.537 4.537 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.957 3.043 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.086 3.914 23 C -0.094 4.094 24 C -0.092 4.092 25 C -0.056 4.056 26 C -0.142 4.142 27 C -0.143 4.143 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.398 0.602 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.016 0.984 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.096 0.904 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.073 0.927 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 -10.236 -13.345 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.076 4.076 3 C -0.179 4.179 4 C 0.069 3.931 5 O -0.315 6.315 6 C -0.115 4.115 7 C -0.023 4.023 8 N -0.261 5.261 9 C -0.056 4.056 10 C -0.147 4.147 11 C -0.140 4.140 12 C 0.037 3.963 13 H 0.008 0.992 14 C -0.576 4.576 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.041 4.041 23 C -0.112 4.112 24 C -0.092 4.092 25 C -0.074 4.074 26 C -0.200 4.200 27 C -0.201 4.201 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.255 0.745 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.871 -9.887 -12.381 25.415 hybrid contribution 1.904 0.304 -0.356 1.961 sum -17.967 -9.583 -12.737 24.019 Atomic orbital electron populations 1.20883 0.89167 1.03781 1.03090 1.19915 0.97382 0.91600 0.98679 1.21467 0.92999 0.99165 1.04286 1.18464 0.89979 0.85153 0.99535 1.84941 1.76824 1.35203 1.34552 1.20109 0.95250 0.93195 1.02924 1.20809 0.91213 0.99776 0.90484 1.61842 1.20811 1.34529 1.08870 1.21958 1.00035 0.90861 0.92712 1.21564 0.97162 0.99798 0.96171 1.21444 0.93686 0.96878 1.01966 1.18542 0.93842 0.93092 0.90847 0.99162 1.21499 0.98180 1.42707 0.95173 0.92908 1.25762 1.02029 0.95678 0.95151 1.70046 1.38089 1.47295 1.00190 0.85643 0.80182 0.78845 0.77151 1.19618 1.20932 1.19517 1.21958 0.86242 0.97189 0.98730 1.20849 0.94033 0.96672 0.99653 1.19893 0.93050 0.95330 1.00933 1.20232 1.00099 0.90931 0.96185 1.21850 1.01452 0.99720 0.96931 1.21845 1.01691 1.00203 0.96326 0.90618 0.89628 0.90786 0.84809 0.74477 0.93765 0.90556 0.90660 0.95403 0.93988 0.91300 0.92429 0.95654 0.93084 0.96612 0.92673 0.85505 0.88592 0.93074 0.91039 0.92651 0.93355 0.90853 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.26 71.23 0.66 -0.89 16 2 C -0.08 -1.55 5.88 -19.88 -0.12 -1.67 16 3 C -0.16 -3.87 9.62 22.37 0.22 -3.66 16 4 C 0.11 3.25 6.68 22.51 0.15 3.40 16 5 O -0.50 -15.11 12.82 -92.46 -1.19 -16.30 16 6 C -0.11 -3.22 4.85 -19.77 -0.10 -3.32 16 7 C 0.10 3.27 4.76 85.56 0.41 3.68 16 8 N -0.54 -20.96 4.57 -900.91 -4.12 -25.08 16 9 C 0.07 2.66 5.29 86.32 0.46 3.11 16 10 C -0.11 -4.58 6.09 30.65 0.19 -4.40 16 11 C -0.10 -5.15 5.02 30.67 0.15 -5.00 16 12 C 0.06 3.00 2.26 -11.49 -0.03 2.97 16 13 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 14 C -0.54 -30.95 8.56 25.60 0.22 -30.73 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.71 5.30 84.65 0.45 1.16 16 17 N -0.92 -55.23 11.35 21.45 0.24 -54.99 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C 0.09 3.88 4.65 86.32 0.40 4.28 16 23 C -0.09 -2.24 7.72 22.25 0.17 -2.07 16 24 C -0.09 -1.89 4.79 -19.85 -0.09 -1.98 16 25 C -0.06 -0.84 2.90 -11.54 -0.03 -0.88 16 26 C -0.14 -1.86 8.96 71.98 0.64 -1.22 16 27 C -0.14 -2.20 9.05 71.98 0.65 -1.55 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.89 6.35 -2.39 -0.02 0.88 16 30 H 0.07 0.88 8.04 -2.39 -0.02 0.86 16 31 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.40 7.85 9.06 -74.06 -0.67 7.18 16 33 H 0.04 1.27 7.82 -2.38 -0.02 1.25 16 34 H 0.08 2.33 7.63 -2.39 -0.02 2.32 16 35 H 0.08 2.51 6.98 -2.39 -0.02 2.50 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.06 3.28 6.15 -2.39 -0.01 3.27 16 40 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 2.47 7.93 -2.39 -0.02 2.45 16 44 H 0.13 2.78 7.04 -2.91 -0.02 2.75 16 45 H 0.10 1.16 5.54 -2.39 -0.01 1.15 16 46 H 0.05 0.74 7.16 -2.39 -0.02 0.72 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.05 0.83 7.64 -2.39 -0.02 0.81 16 Total: -1.00 -68.66 392.26 1.59 -67.06 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.23 Total: 21.15 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 4.40 Total: -38.75 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.88 Total: -80.07 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.19 Total: -16.30 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.66 1.59 -67.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.960 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds