Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38169 * 119.97227 * 2 1 4 4 C 1.38712 * 119.94485 * 179.97438 * 3 2 1 5 5 O 1.35899 * 120.05769 * 180.02562 * 4 3 2 6 6 C 1.38753 * 119.88837 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.03092 * 180.02562 * 6 4 3 8 8 N 1.46906 * 109.46928 * 285.00224 * 7 6 4 9 9 C 1.46839 * 111.00297 * 66.04077 * 8 7 6 10 10 C 1.53031 * 109.52502 * 174.16160 * 9 8 7 11 11 C 1.53120 * 109.28096 * 59.18167 * 10 9 8 12 12 C 1.53124 * 109.15450 * 302.34748 * 11 10 9 13 13 H 1.08995 * 109.50379 * 297.71015 * 12 11 10 14 14 C 1.50703 * 109.49825 * 177.63603 * 12 11 10 15 15 H 1.08005 * 119.99909 * 239.99974 * 14 12 11 16 16 C 1.37870 * 120.00272 * 59.99861 * 14 12 11 17 17 N 1.31515 * 120.00418 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99960 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46647 * 90.00203 * 18 16 14 20 20 H 1.48500 * 109.47036 * 209.99697 * 18 16 14 21 21 H 1.48500 * 109.47221 * 330.00343 * 18 16 14 22 22 C 1.46848 * 110.99629 * 301.82870 * 8 7 6 23 23 C 1.38126 * 119.94605 * 359.97438 * 6 4 3 24 24 C 1.38248 * 119.97368 * 179.97438 * 2 1 3 25 25 C 1.50706 * 119.94122 * 0.02562 * 24 2 1 26 26 C 1.53004 * 109.46736 * 125.40062 * 25 24 2 27 27 C 1.52994 * 109.46841 * 245.39811 * 25 24 2 28 28 H 1.09000 * 109.46997 * 95.77484 * 1 2 3 29 29 H 1.08997 * 109.47289 * 215.77455 * 1 2 3 30 30 H 1.08998 * 109.47329 * 335.77416 * 1 2 3 31 31 H 1.07996 * 120.02681 * 0.27690 * 3 2 1 32 32 H 0.96699 * 113.99738 * 90.00489 * 5 4 3 33 33 H 1.09006 * 109.46834 * 44.99547 * 7 6 4 34 34 H 1.09001 * 109.47466 * 164.99625 * 7 6 4 35 35 H 1.09000 * 109.46560 * 294.18000 * 9 8 7 36 36 H 1.09006 * 109.46395 * 54.14659 * 9 8 7 37 37 H 1.09005 * 109.50915 * 179.12510 * 10 9 8 38 38 H 1.09002 * 109.50425 * 299.23615 * 10 9 8 39 39 H 1.08999 * 109.52207 * 62.24862 * 11 10 9 40 40 H 1.09001 * 109.52395 * 182.38131 * 11 10 9 41 41 H 0.96998 * 120.00023 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46617 * 305.85858 * 22 8 7 43 43 H 1.09005 * 109.46140 * 65.83106 * 22 8 7 44 44 H 1.07998 * 119.97831 * 179.97438 * 23 6 4 45 45 H 1.08997 * 109.46925 * 5.39910 * 25 24 2 46 46 H 1.08994 * 109.46845 * 60.00001 * 26 25 24 47 47 H 1.08996 * 109.46601 * 180.02562 * 26 25 24 48 48 H 1.08995 * 109.46833 * 299.99996 * 26 25 24 49 49 H 1.08999 * 109.47281 * 60.00690 * 27 25 24 50 50 H 1.09004 * 109.46942 * 180.02562 * 27 25 24 51 51 H 1.08997 * 109.47886 * 300.00079 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 0.0005 5 8 4.2656 2.3722 0.0011 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0115 0.0017 8 7 6.2739 0.3461 -1.3356 9 6 5.9289 1.7338 -1.6695 10 6 6.5791 2.1163 -3.0009 11 6 6.0821 1.1694 -4.0968 12 6 6.4110 -0.2729 -3.7016 13 1 7.4917 -0.3919 -3.6252 14 6 5.8737 -1.2159 -4.7473 15 1 5.1465 -1.9665 -4.4750 16 6 6.3106 -1.1204 -6.0514 17 7 7.1965 -0.2068 -6.3830 18 14 5.6451 -2.2898 -7.3473 19 1 4.4338 -1.6994 -7.9715 20 1 6.6792 -2.5145 -8.3891 21 1 5.2932 -3.5849 -6.7116 22 6 5.7656 -0.5862 -2.3499 23 6 3.5805 -1.2009 0.0005 24 6 2.1976 -1.1976 0.0005 25 6 1.4422 -2.5016 0.0005 26 6 1.9101 -3.3620 -1.1750 27 6 1.7057 -3.2436 1.3123 28 1 -0.3633 -0.1034 -1.0225 29 1 -0.3634 -0.8337 0.6007 30 1 -0.3634 0.9371 0.4217 31 1 1.6572 2.1322 0.0045 32 1 4.4624 2.7122 0.8846 33 1 6.1471 0.7138 0.7290 34 1 6.1424 -1.0053 0.2676 35 1 4.8463 1.8287 -1.7535 36 1 6.2916 2.3973 -0.8843 37 1 6.3101 3.1414 -3.2562 38 1 7.6625 2.0350 -2.9135 39 1 5.0037 1.2789 -4.2113 40 1 6.5749 1.4115 -5.0384 41 1 7.5036 -0.1394 -7.3007 42 1 6.0097 -1.6079 -2.0590 43 1 4.6837 -0.4804 -2.4308 44 1 4.1177 -2.1378 0.0001 45 1 0.3748 -2.3031 -0.0966 46 1 2.9774 -3.5604 -1.0777 47 1 1.3634 -4.3049 -1.1752 48 1 1.7224 -2.8333 -2.1094 49 1 1.3723 -2.6306 2.1497 50 1 1.1596 -4.1870 1.3121 51 1 2.7730 -3.4420 1.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = -35.446532 kcal Electronic energy + Delta-G solvation = -28444.473614 eV Core-core repulsion = 24921.849912 eV Total energy + Delta-G solvation = -3522.623703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48371 -38.17330 -37.20434 -34.69778 -34.06888 -32.62146 -31.11681 -29.71190 -28.98408 -27.64729 -27.15631 -24.87201 -24.73454 -23.41702 -21.86986 -21.40392 -20.77573 -19.67153 -18.64188 -17.46099 -16.45607 -16.34746 -15.70198 -15.13083 -14.70378 -14.36498 -14.30261 -14.04263 -13.78855 -13.70200 -13.46261 -13.06378 -12.99937 -12.94957 -12.50863 -12.36210 -12.26854 -12.25684 -12.00486 -11.75134 -11.65021 -11.42925 -11.16988 -11.01173 -10.88973 -10.87526 -10.66385 -10.54340 -10.46215 -10.15890 -9.90549 -9.63332 -9.35910 -8.93327 -8.62890 -8.56157 -8.22370 -8.18134 -7.50406 -5.89818 -3.95485 1.33399 1.44026 3.34521 3.41002 3.43957 3.65220 4.29336 4.47752 4.62553 4.71655 4.79034 4.96462 5.02706 5.15185 5.18875 5.28319 5.40014 5.40941 5.50048 5.54214 5.60622 5.65831 5.74042 5.78736 5.83735 5.92477 5.94086 5.99155 6.10252 6.15273 6.16451 6.20929 6.29046 6.31734 6.43606 6.56736 6.59153 6.65021 6.72761 6.74750 6.91424 6.92252 6.99702 7.10575 7.35564 7.52921 7.76706 7.82264 7.84261 7.96836 8.18905 8.27635 8.57984 9.08522 9.68078 11.16110 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.004856 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.592825 B = 5764.766565 C = 7197.378810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.145 4.145 4 C 0.111 3.889 5 O -0.484 6.484 6 C -0.137 4.137 7 C 0.098 3.902 8 N -0.527 5.527 9 C 0.070 3.930 10 C -0.121 4.121 11 C -0.108 4.108 12 C 0.055 3.945 13 H 0.032 0.968 14 C -0.510 4.510 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.070 3.930 23 C -0.082 4.082 24 C -0.085 4.085 25 C -0.059 4.059 26 C -0.146 4.146 27 C -0.142 4.142 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.372 0.628 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.258 0.742 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.056 0.944 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 0.385 17.257 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.164 4.164 4 C 0.066 3.934 5 O -0.294 6.294 6 C -0.139 4.139 7 C -0.030 4.030 8 N -0.249 5.249 9 C -0.057 4.057 10 C -0.159 4.159 11 C -0.146 4.146 12 C 0.036 3.964 13 H 0.050 0.950 14 C -0.549 4.549 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.057 4.057 23 C -0.101 4.101 24 C -0.085 4.085 25 C -0.077 4.077 26 C -0.204 4.204 27 C -0.199 4.199 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.141 0.859 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.441 0.356 16.478 19.510 hybrid contribution -1.227 -0.360 -0.388 1.336 sum -11.668 -0.003 16.090 19.875 Atomic orbital electron populations 1.20807 0.91451 1.02361 1.02393 1.19535 0.95705 0.92156 1.00292 1.21192 0.93443 0.97929 1.03828 1.18145 0.89464 0.85247 1.00512 1.85305 1.75814 1.36377 1.31875 1.21065 0.98846 0.92587 1.01428 1.21155 0.86924 1.01557 0.93353 1.62441 1.57710 1.03816 1.00910 1.22192 0.98537 0.88268 0.96734 1.21735 1.00226 0.98296 0.95603 1.21616 0.98297 0.96128 0.98593 1.18654 0.96408 0.92498 0.88812 0.95017 1.21143 1.24326 1.16118 0.93333 0.93018 1.24919 0.95009 0.95504 0.98369 1.69900 1.30911 1.33682 1.18271 0.86676 0.78611 0.81519 0.81660 1.20849 1.21257 1.20001 1.22251 0.96594 0.93807 0.93069 1.20768 0.93207 0.97269 0.98884 1.19665 0.93558 0.94109 1.01165 1.20178 0.99507 0.92134 0.95908 1.21873 1.01748 0.98974 0.97756 1.21837 1.02033 0.99618 0.96437 0.91149 0.91286 0.91854 0.85959 0.77231 0.90945 0.90690 0.93573 0.92355 0.93866 0.92588 0.95478 0.89379 0.93163 0.92908 0.96033 0.85914 0.90208 0.92162 0.92594 0.92226 0.92828 0.92543 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.14 36.00 0.33 -0.77 16 2 C -0.08 -0.97 5.88 -104.65 -0.62 -1.58 16 3 C -0.15 -1.94 9.62 -39.43 -0.38 -2.32 16 4 C 0.11 1.60 5.48 -39.22 -0.21 1.38 16 5 O -0.48 -6.37 8.81 -19.42 -0.17 -6.54 16 6 C -0.14 -2.04 3.91 -104.47 -0.41 -2.45 16 7 C 0.10 1.52 5.43 -4.97 -0.03 1.49 16 8 N -0.53 -10.18 4.86 -236.11 -1.15 -11.33 16 9 C 0.07 1.33 3.69 -3.84 -0.01 1.32 16 10 C -0.12 -2.57 6.09 -26.65 -0.16 -2.73 16 11 C -0.11 -2.73 5.02 -26.61 -0.13 -2.86 16 12 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 13 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 14 C -0.51 -14.45 8.57 -34.44 -0.30 -14.74 16 15 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 16 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -26.07 11.35 55.43 0.63 -25.44 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.07 1.55 4.11 -3.84 -0.02 1.54 16 23 C -0.08 -1.17 7.95 -39.60 -0.31 -1.49 16 24 C -0.08 -1.10 4.79 -104.60 -0.50 -1.60 16 25 C -0.06 -0.64 2.82 -91.77 -0.26 -0.89 16 26 C -0.15 -1.71 8.94 37.16 0.33 -1.38 16 27 C -0.14 -1.31 9.06 37.15 0.34 -0.97 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 30 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.37 3.12 9.06 45.56 0.41 3.53 16 33 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 34 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 35 H 0.05 0.94 5.11 -51.93 -0.27 0.68 16 36 H 0.06 1.00 7.21 -51.93 -0.37 0.62 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.05 1.16 8.12 -51.93 -0.42 0.74 16 43 H 0.02 0.50 7.06 -51.93 -0.37 0.14 16 44 H 0.12 1.67 7.04 -52.49 -0.37 1.30 16 45 H 0.08 0.78 5.70 -51.93 -0.30 0.48 16 46 H 0.06 0.75 7.10 -51.93 -0.37 0.38 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.55 7.72 -51.93 -0.40 0.15 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -30.98 382.08 -10.72 -41.69 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.12 Total: 4.22 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -2.64 Total: -25.13 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.52 Total: -36.77 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.17 Total: -6.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.98 -10.72 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.246 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds