Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38169 * 119.97227 * 2 1 4 4 C 1.38712 * 119.94485 * 179.97438 * 3 2 1 5 5 O 1.35899 * 120.05769 * 180.02562 * 4 3 2 6 6 C 1.38753 * 119.88837 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.03092 * 180.02562 * 6 4 3 8 8 N 1.46906 * 109.46928 * 285.00224 * 7 6 4 9 9 C 1.46839 * 111.00297 * 66.04077 * 8 7 6 10 10 C 1.53031 * 109.52502 * 174.16160 * 9 8 7 11 11 C 1.53120 * 109.28096 * 59.18167 * 10 9 8 12 12 C 1.53124 * 109.15450 * 302.34748 * 11 10 9 13 13 H 1.08995 * 109.50379 * 297.71015 * 12 11 10 14 14 C 1.50703 * 109.49825 * 177.63603 * 12 11 10 15 15 H 1.08005 * 119.99909 * 239.99974 * 14 12 11 16 16 C 1.37870 * 120.00272 * 59.99861 * 14 12 11 17 17 N 1.31515 * 120.00418 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99960 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46647 * 90.00203 * 18 16 14 20 20 H 1.48500 * 109.47036 * 209.99697 * 18 16 14 21 21 H 1.48500 * 109.47221 * 330.00343 * 18 16 14 22 22 C 1.46848 * 110.99629 * 301.82870 * 8 7 6 23 23 C 1.38126 * 119.94605 * 359.97438 * 6 4 3 24 24 C 1.38248 * 119.97368 * 179.97438 * 2 1 3 25 25 C 1.50706 * 119.94122 * 0.02562 * 24 2 1 26 26 C 1.53004 * 109.46736 * 125.40062 * 25 24 2 27 27 C 1.52994 * 109.46841 * 245.39811 * 25 24 2 28 28 H 1.09000 * 109.46997 * 95.77484 * 1 2 3 29 29 H 1.08997 * 109.47289 * 215.77455 * 1 2 3 30 30 H 1.08998 * 109.47329 * 335.77416 * 1 2 3 31 31 H 1.07996 * 120.02681 * 0.27690 * 3 2 1 32 32 H 0.96699 * 113.99738 * 90.00489 * 5 4 3 33 33 H 1.09006 * 109.46834 * 44.99547 * 7 6 4 34 34 H 1.09001 * 109.47466 * 164.99625 * 7 6 4 35 35 H 1.09000 * 109.46560 * 294.18000 * 9 8 7 36 36 H 1.09006 * 109.46395 * 54.14659 * 9 8 7 37 37 H 1.09005 * 109.50915 * 179.12510 * 10 9 8 38 38 H 1.09002 * 109.50425 * 299.23615 * 10 9 8 39 39 H 1.08999 * 109.52207 * 62.24862 * 11 10 9 40 40 H 1.09001 * 109.52395 * 182.38131 * 11 10 9 41 41 H 0.96998 * 120.00023 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46617 * 305.85858 * 22 8 7 43 43 H 1.09005 * 109.46140 * 65.83106 * 22 8 7 44 44 H 1.07998 * 119.97831 * 179.97438 * 23 6 4 45 45 H 1.08997 * 109.46925 * 5.39910 * 25 24 2 46 46 H 1.08994 * 109.46845 * 60.00001 * 26 25 24 47 47 H 1.08996 * 109.46601 * 180.02562 * 26 25 24 48 48 H 1.08995 * 109.46833 * 299.99996 * 26 25 24 49 49 H 1.08999 * 109.47281 * 60.00690 * 27 25 24 50 50 H 1.09004 * 109.46942 * 180.02562 * 27 25 24 51 51 H 1.08997 * 109.47886 * 300.00079 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1962 0.0005 5 8 4.2656 2.3722 0.0011 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0115 0.0017 8 7 6.2739 0.3461 -1.3356 9 6 5.9289 1.7338 -1.6695 10 6 6.5791 2.1163 -3.0009 11 6 6.0821 1.1694 -4.0968 12 6 6.4110 -0.2729 -3.7016 13 1 7.4917 -0.3919 -3.6252 14 6 5.8737 -1.2159 -4.7473 15 1 5.1465 -1.9665 -4.4750 16 6 6.3106 -1.1204 -6.0514 17 7 7.1965 -0.2068 -6.3830 18 14 5.6451 -2.2898 -7.3473 19 1 4.4338 -1.6994 -7.9715 20 1 6.6792 -2.5145 -8.3891 21 1 5.2932 -3.5849 -6.7116 22 6 5.7656 -0.5862 -2.3499 23 6 3.5805 -1.2009 0.0005 24 6 2.1976 -1.1976 0.0005 25 6 1.4422 -2.5016 0.0005 26 6 1.9101 -3.3620 -1.1750 27 6 1.7057 -3.2436 1.3123 28 1 -0.3633 -0.1034 -1.0225 29 1 -0.3634 -0.8337 0.6007 30 1 -0.3634 0.9371 0.4217 31 1 1.6572 2.1322 0.0045 32 1 4.4624 2.7122 0.8846 33 1 6.1471 0.7138 0.7290 34 1 6.1424 -1.0053 0.2676 35 1 4.8463 1.8287 -1.7535 36 1 6.2916 2.3973 -0.8843 37 1 6.3101 3.1414 -3.2562 38 1 7.6625 2.0350 -2.9135 39 1 5.0037 1.2789 -4.2113 40 1 6.5749 1.4115 -5.0384 41 1 7.5036 -0.1394 -7.3007 42 1 6.0097 -1.6079 -2.0590 43 1 4.6837 -0.4804 -2.4308 44 1 4.1177 -2.1378 0.0001 45 1 0.3748 -2.3031 -0.0966 46 1 2.9774 -3.5604 -1.0777 47 1 1.3634 -4.3049 -1.1752 48 1 1.7224 -2.8333 -2.1094 49 1 1.3723 -2.6306 2.1497 50 1 1.1596 -4.1870 1.3121 51 1 2.7730 -3.4420 1.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = -53.505461 kcal Electronic energy + Delta-G solvation = -28445.256708 eV Core-core repulsion = 24921.849912 eV Total energy + Delta-G solvation = -3523.406796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57805 -39.55990 -38.37512 -35.97557 -35.38220 -34.24154 -32.59101 -31.63254 -29.94846 -28.83331 -27.98870 -26.92271 -26.01805 -24.43815 -23.41661 -23.03644 -22.01819 -20.70335 -20.32041 -18.62649 -18.41630 -17.42932 -17.07581 -16.57582 -16.15833 -15.80045 -15.62461 -15.18202 -15.03089 -14.80306 -14.70931 -14.59197 -14.32743 -14.10911 -13.82750 -13.73303 -13.60374 -13.31060 -13.17980 -13.08528 -12.88645 -12.84538 -12.66092 -12.49459 -12.43326 -12.21879 -11.93505 -11.84077 -11.75423 -11.56391 -11.46612 -11.43274 -11.12101 -10.81493 -10.66730 -10.37209 -9.64136 -9.25469 -9.01772 -8.08344 -6.22601 0.32468 0.40799 1.38521 1.38701 1.49434 2.41367 2.64601 3.17984 3.27582 3.34229 3.74718 3.78516 3.92782 4.11565 4.20510 4.28877 4.31075 4.32157 4.42213 4.43393 4.55268 4.57513 4.67068 4.71894 4.78927 4.80962 4.81987 4.85287 4.93153 4.94633 4.99569 5.00718 5.07402 5.11759 5.16300 5.21750 5.22915 5.28348 5.32849 5.38383 5.42637 5.49106 5.51727 5.59950 5.63070 5.75460 5.97234 6.01392 6.12333 6.21866 6.40959 6.47760 6.89476 6.93183 7.44773 8.96421 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.004856 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.592825 B = 5764.766565 C = 7197.378810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.158 4.158 4 C 0.107 3.893 5 O -0.495 6.495 6 C -0.156 4.156 7 C 0.101 3.899 8 N -0.536 5.536 9 C 0.082 3.918 10 C -0.117 4.117 11 C -0.099 4.099 12 C 0.053 3.947 13 H -0.004 1.004 14 C -0.533 4.533 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.267 1.267 22 C 0.094 3.906 23 C -0.094 4.094 24 C -0.094 4.094 25 C -0.056 4.056 26 C -0.146 4.146 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.395 0.605 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.011 0.989 40 H 0.056 0.944 41 H 0.260 0.740 42 H 0.048 0.952 43 H 0.007 0.993 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.809 0.298 18.751 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.176 4.176 4 C 0.062 3.938 5 O -0.308 6.308 6 C -0.159 4.159 7 C -0.027 4.027 8 N -0.258 5.258 9 C -0.045 4.045 10 C -0.155 4.155 11 C -0.137 4.137 12 C 0.034 3.966 13 H 0.014 0.986 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.777 3.223 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.034 4.034 23 C -0.113 4.113 24 C -0.094 4.094 25 C -0.074 4.074 26 C -0.203 4.203 27 C -0.195 4.195 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.253 0.747 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.186 0.276 18.006 21.744 hybrid contribution -0.680 -0.303 -0.821 1.108 sum -12.866 -0.027 17.185 21.468 Atomic orbital electron populations 1.20867 0.89263 1.03923 1.02832 1.19938 0.97410 0.91762 0.98892 1.21449 0.93318 0.98910 1.03926 1.18253 0.89986 0.85272 1.00276 1.85184 1.75748 1.35879 1.33946 1.21018 0.98326 0.93280 1.03263 1.21179 0.87735 1.02498 0.91256 1.62358 1.58241 1.03365 1.01866 1.22104 0.97844 0.88533 0.96041 1.21689 0.99832 0.98262 0.95684 1.21409 0.96818 0.96756 0.98742 1.18584 0.94277 0.92886 0.90827 0.98582 1.21471 1.24558 1.16677 0.94487 0.93449 1.25709 0.95197 0.97063 1.00419 1.70041 1.31770 1.34940 1.18745 0.85656 0.78101 0.79596 0.78929 1.20266 1.20561 1.19192 1.21794 0.95090 0.94386 0.92138 1.20883 0.94071 0.97075 0.99240 1.19944 0.93291 0.95395 1.00773 1.20217 0.99917 0.91070 0.96212 1.21869 1.01270 0.99905 0.97279 1.21800 1.01852 1.00235 0.95594 0.91127 0.89711 0.90385 0.84556 0.74669 0.88593 0.90296 0.94351 0.89468 0.92018 0.93257 0.97021 0.92515 0.93062 0.93302 0.97481 0.86214 0.88746 0.93485 0.90665 0.94328 0.92180 0.90997 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.14 71.23 0.65 -1.24 16 2 C -0.08 -1.88 5.88 -19.88 -0.12 -1.99 16 3 C -0.16 -3.95 9.62 22.37 0.22 -3.74 16 4 C 0.11 2.92 5.48 22.51 0.12 3.04 16 5 O -0.49 -11.93 8.81 -92.42 -0.81 -12.74 16 6 C -0.16 -4.55 3.91 -19.77 -0.08 -4.63 16 7 C 0.10 3.00 5.43 85.56 0.46 3.46 16 8 N -0.54 -20.52 4.86 -900.93 -4.38 -24.90 16 9 C 0.08 3.03 3.69 86.33 0.32 3.35 16 10 C -0.12 -4.97 6.09 30.64 0.19 -4.78 16 11 C -0.10 -5.17 5.02 30.68 0.15 -5.01 16 12 C 0.05 2.88 2.26 -11.49 -0.03 2.86 16 13 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 14 C -0.53 -31.16 8.57 25.60 0.22 -30.94 16 15 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 16 C 0.01 0.85 5.30 84.65 0.45 1.30 16 17 N -0.92 -55.23 11.35 21.44 0.24 -54.99 16 18 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.09 4.28 4.11 86.32 0.36 4.63 16 23 C -0.09 -2.63 7.95 22.26 0.18 -2.46 16 24 C -0.09 -2.33 4.79 -19.85 -0.10 -2.43 16 25 C -0.06 -1.12 2.82 -11.54 -0.03 -1.15 16 26 C -0.15 -3.33 8.94 71.98 0.64 -2.69 16 27 C -0.14 -2.26 9.06 71.98 0.65 -1.60 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.15 6.54 -2.39 -0.02 1.13 16 30 H 0.08 1.08 8.05 -2.39 -0.02 1.06 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.39 5.51 9.06 -74.06 -0.67 4.84 16 33 H 0.10 2.38 7.93 -2.38 -0.02 2.37 16 34 H 0.08 2.26 7.95 -2.39 -0.02 2.24 16 35 H 0.04 1.52 5.11 -2.39 -0.01 1.51 16 36 H 0.09 2.75 7.21 -2.38 -0.02 2.73 16 37 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 3.29 6.15 -2.39 -0.01 3.28 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.05 2.22 8.12 -2.39 -0.02 2.20 16 43 H 0.01 0.34 7.06 -2.38 -0.02 0.32 16 44 H 0.12 3.31 7.04 -2.91 -0.02 3.29 16 45 H 0.09 1.60 5.70 -2.39 -0.01 1.59 16 46 H 0.05 1.17 7.10 -2.39 -0.02 1.16 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.05 0.90 7.72 -2.39 -0.02 0.88 16 Total: -1.00 -68.43 382.08 1.58 -66.85 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.24 Total: 22.47 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 4.26 Total: -44.00 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -4.13 Total: -79.89 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.81 Total: -12.74 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.43 1.58 -66.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.347 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds