Wall clock time and date at job start Tue Mar 31 2020 11:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.99617 * 2 1 4 4 C 1.38216 * 119.99364 * 180.26994 * 3 2 1 5 5 C 1.38260 * 120.00233 * 359.75100 * 4 3 2 6 6 C 1.38215 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.38207 * 119.99751 * 179.74385 * 2 1 3 8 8 C 1.50699 * 120.00474 * 0.02562 * 7 2 1 9 9 C 1.53003 * 109.46666 * 279.67394 * 8 7 2 10 10 H 1.08996 * 109.47391 * 56.41163 * 9 8 7 11 11 C 1.53003 * 109.46941 * 296.40744 * 9 8 7 12 12 C 1.50701 * 109.46853 * 176.41082 * 9 8 7 13 13 O 1.21288 * 119.99917 * 10.02756 * 12 9 8 14 14 N 1.34771 * 120.00231 * 190.29533 * 12 9 8 15 15 C 1.46508 * 119.99670 * 3.59525 * 14 12 9 16 16 C 1.50698 * 109.47030 * 83.44137 * 15 14 12 17 17 H 1.08001 * 120.00533 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00216 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00340 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99501 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47038 * 89.99902 * 20 18 16 22 22 H 1.48498 * 109.46839 * 209.99503 * 20 18 16 23 23 H 1.48498 * 109.47306 * 329.99585 * 20 18 16 24 24 C 1.46500 * 120.00515 * 183.58853 * 14 12 9 25 25 C 1.53004 * 109.46903 * 84.36203 * 24 14 12 26 26 C 1.52999 * 109.46841 * 65.00327 * 25 24 14 27 27 C 1.52992 * 109.47044 * 185.00074 * 25 24 14 28 28 H 1.09001 * 109.47121 * 273.80687 * 1 2 3 29 29 H 1.09001 * 109.47016 * 33.80685 * 1 2 3 30 30 H 1.09000 * 109.47336 * 153.80531 * 1 2 3 31 31 H 1.07991 * 120.00340 * 0.04741 * 3 2 1 32 32 H 1.07998 * 119.99948 * 179.76505 * 4 3 2 33 33 H 1.07994 * 119.99913 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.00270 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47297 * 159.67231 * 8 7 2 36 36 H 1.09001 * 109.46633 * 39.66963 * 8 7 2 37 37 H 1.08995 * 109.47227 * 63.90868 * 11 9 8 38 38 H 1.09005 * 109.46959 * 183.91207 * 11 9 8 39 39 H 1.09001 * 109.47074 * 303.90590 * 11 9 8 40 40 H 1.08999 * 109.47148 * 203.43971 * 15 14 12 41 41 H 1.08994 * 109.47001 * 323.43817 * 15 14 12 42 42 H 0.97004 * 120.00366 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47254 * 204.36310 * 24 14 12 44 44 H 1.08997 * 109.46882 * 324.36724 * 24 14 12 45 45 H 1.08995 * 109.47085 * 305.00314 * 25 24 14 46 46 H 1.09000 * 109.47158 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.46981 * 299.99960 * 26 25 24 48 48 H 1.08995 * 109.47292 * 60.00114 * 26 25 24 49 49 H 1.09008 * 109.47371 * 60.00049 * 27 25 24 50 50 H 1.08995 * 109.47236 * 179.97438 * 27 25 24 51 51 H 1.09000 * 109.47335 * 300.00529 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0056 5 6 4.2717 0.0000 -0.0061 6 6 3.5807 -1.1970 -0.0003 7 6 2.1980 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0106 9 6 0.9792 -2.8164 1.4338 10 1 0.3782 -1.9889 1.8107 11 6 2.1982 -3.0143 2.3370 12 6 0.1509 -4.0754 1.4249 13 8 0.1014 -4.7616 0.4260 14 7 -0.5390 -4.4360 2.5250 15 6 -0.5475 -3.5645 3.7026 16 6 -1.5969 -2.4969 3.5299 17 1 -2.1978 -2.4703 2.6329 18 6 -1.7908 -1.5544 4.5175 19 7 -2.7062 -0.6225 4.3666 20 14 -0.7520 -1.6007 6.0693 21 1 0.4699 -0.7803 5.8717 22 1 -1.5361 -1.0550 7.2062 23 1 -0.3640 -3.0036 6.3637 24 6 -1.2806 -5.6993 2.5433 25 6 -0.3351 -6.8402 2.9243 26 6 0.1555 -6.6381 4.3594 27 6 -1.0780 -8.1738 2.8225 28 1 -0.3633 0.0682 1.0254 29 1 -0.3633 0.8539 -0.5718 30 1 -0.3634 -0.9221 -0.4536 31 1 1.6583 2.1326 0.0008 32 1 4.1204 2.1326 -0.0095 33 1 5.3516 0.0000 -0.0109 34 1 4.1206 -2.1323 -0.0011 35 1 2.0976 -3.3000 -0.3428 36 1 0.5781 -2.4239 -0.6461 37 1 2.7599 -2.0822 2.3987 38 1 1.8682 -3.3063 3.3340 39 1 2.8350 -3.7955 1.9218 40 1 -0.7731 -4.1554 4.5903 41 1 0.4308 -3.0975 3.8160 42 1 -2.8423 0.0408 5.0612 43 1 -2.0872 -5.6365 3.2736 44 1 -1.6993 -5.8891 1.5550 45 1 0.5181 -6.8469 2.2461 46 1 0.8295 -7.4507 4.6307 47 1 0.6848 -5.6880 4.4319 48 1 -0.6977 -6.6315 5.0376 49 1 -1.4277 -8.3178 1.8001 50 1 -0.4044 -8.9866 3.0935 51 1 -1.9314 -8.1671 3.5006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858826853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:15 Heat of formation + Delta-G solvation = -37.765097 kcal Electronic energy + Delta-G solvation = -28201.261444 eV Core-core repulsion = 24678.537201 eV Total energy + Delta-G solvation = -3522.724243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93845 -39.02495 -36.28660 -34.70439 -33.91146 -32.41909 -32.27511 -30.56739 -28.23280 -26.99003 -26.90474 -26.19899 -25.79271 -23.17784 -22.04142 -21.65272 -20.34857 -19.75191 -18.03073 -17.08448 -16.50182 -15.93093 -15.71409 -15.40985 -14.72932 -14.70989 -14.43858 -14.19676 -13.86429 -13.58172 -13.19113 -13.03641 -12.89576 -12.59554 -12.54616 -12.31290 -12.27471 -12.08565 -11.92422 -11.80755 -11.72587 -11.61680 -11.45515 -11.11635 -10.96493 -10.88406 -10.79882 -10.61558 -10.50943 -10.43873 -10.37201 -10.21009 -10.20250 -9.59736 -8.94089 -8.71008 -8.56615 -8.28925 -7.69161 -6.22829 -4.23370 1.57041 1.59630 3.15772 3.23055 3.25497 3.40336 3.82509 4.02264 4.25202 4.94709 5.03321 5.07600 5.13085 5.18404 5.21781 5.22455 5.34671 5.36560 5.42810 5.50745 5.59161 5.71082 5.79768 5.85746 5.91607 5.94274 5.99737 6.02415 6.04002 6.07701 6.13165 6.18813 6.19724 6.24695 6.26382 6.33501 6.38149 6.44406 6.47617 6.53609 6.61355 6.63153 6.67981 6.70798 6.74589 6.81597 6.99912 7.24544 7.40426 7.44856 8.17031 8.41319 8.82332 8.98610 9.37219 10.89592 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005279 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.019719 B = 5303.097093 C = 6869.527059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.132 4.132 6 C -0.113 4.113 7 C -0.074 4.074 8 C -0.060 4.060 9 C -0.105 4.105 10 H 0.117 0.883 11 C -0.145 4.145 12 C 0.526 3.474 13 O -0.572 6.572 14 N -0.587 5.587 15 C 0.198 3.802 16 C -0.539 4.539 17 H 0.078 0.922 18 C 0.079 3.921 19 N -0.889 5.889 20 Si 0.864 3.136 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.125 3.875 25 C -0.111 4.111 26 C -0.146 4.146 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.266 0.734 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -3.125 -4.200 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.131 4.131 7 C -0.074 4.074 8 C -0.098 4.098 9 C -0.126 4.126 10 H 0.135 0.865 11 C -0.202 4.202 12 C 0.315 3.685 13 O -0.453 6.453 14 N -0.317 5.317 15 C 0.077 3.923 16 C -0.577 4.577 17 H 0.096 0.904 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.691 3.309 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.188 1.188 24 C 0.001 3.999 25 C -0.131 4.131 26 C -0.203 4.203 27 C -0.199 4.199 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.042 -3.316 -4.593 11.530 hybrid contribution 0.422 0.304 1.110 1.226 sum 10.465 -3.012 -3.484 11.433 Atomic orbital electron populations 1.20949 0.90725 1.02624 1.03773 1.19884 0.96438 0.92477 0.98329 1.21012 0.94174 0.97522 1.01234 1.21036 0.94311 0.97758 1.01317 1.21024 0.99379 0.92652 1.01913 1.21017 0.93604 0.97874 1.00591 1.19800 0.93545 0.94733 0.99283 1.20413 0.99891 0.93254 0.96203 1.21237 0.97253 0.97901 0.96249 0.86544 1.21906 0.96660 1.01951 0.99717 1.20409 0.79528 0.86264 0.82289 1.90582 1.65967 1.55802 1.32960 1.47853 1.48061 1.20314 1.15436 1.20092 0.98132 0.90213 0.83832 1.21389 1.19201 1.10869 1.06236 0.90390 1.24835 0.94863 0.94967 0.97822 1.69882 1.32606 1.15817 1.34381 0.87029 0.81024 0.79131 0.83765 1.19744 1.20910 1.18828 1.21366 0.93725 0.82688 1.02094 1.21493 0.99225 0.94999 0.97375 1.21874 1.00921 1.01447 0.96055 1.21744 1.00141 0.96396 1.01643 0.89584 0.92038 0.91064 0.86337 0.86648 0.86646 0.86375 0.90906 0.90294 0.91791 0.91380 0.92962 0.94680 0.94449 0.92419 0.90472 0.91074 0.91206 0.93490 0.92265 0.92738 0.92713 0.93007 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.94 36.01 0.32 -1.62 16 2 C -0.07 -1.09 5.88 -104.62 -0.61 -1.71 16 3 C -0.12 -1.68 9.72 -39.58 -0.38 -2.06 16 4 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 5 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 6 C -0.11 -1.52 8.85 -39.58 -0.35 -1.87 16 7 C -0.07 -1.11 4.37 -104.62 -0.46 -1.57 16 8 C -0.06 -0.98 3.56 -27.88 -0.10 -1.08 16 9 C -0.11 -1.89 1.87 -91.77 -0.17 -2.06 16 10 H 0.12 2.35 6.11 -51.93 -0.32 2.04 16 11 C -0.15 -2.32 8.44 37.16 0.31 -2.00 16 12 C 0.53 10.58 6.84 -10.99 -0.08 10.50 16 13 O -0.57 -12.48 15.68 5.55 0.09 -12.39 16 14 N -0.59 -11.68 2.21 -175.06 -0.39 -12.07 16 15 C 0.20 4.24 2.72 -5.19 -0.01 4.22 16 16 C -0.54 -13.74 9.09 -34.44 -0.31 -14.05 16 17 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 20 Si 0.86 19.52 27.47 -169.99 -4.67 14.85 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 24 C 0.12 2.22 4.79 -4.04 -0.02 2.20 16 25 C -0.11 -1.68 3.09 -90.62 -0.28 -1.96 16 26 C -0.15 -2.10 8.37 37.16 0.31 -1.79 16 27 C -0.14 -1.76 9.19 37.15 0.34 -1.42 16 28 H 0.09 1.53 7.96 -51.93 -0.41 1.12 16 29 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.07 1.14 5.99 -51.93 -0.31 0.82 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 35 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 36 H 0.08 1.35 6.36 -51.93 -0.33 1.02 16 37 H 0.06 0.97 6.97 -51.93 -0.36 0.61 16 38 H 0.07 1.13 5.45 -51.93 -0.28 0.84 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.75 5.97 -51.93 -0.31 0.44 16 41 H 0.04 0.78 3.82 -51.93 -0.20 0.58 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 44 H 0.07 1.32 7.54 -51.93 -0.39 0.92 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.93 6.44 -51.93 -0.33 0.60 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -28.63 393.61 -9.39 -38.02 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.74 Total: 8.38 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.38 Total: -18.30 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.39 Total: -36.49 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.67 Total: 14.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.63 -9.39 -38.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858826853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.259 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds