Wall clock time and date at job start Tue Mar 31 2020 11:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.99617 * 2 1 4 4 C 1.38216 * 119.99364 * 180.26994 * 3 2 1 5 5 C 1.38260 * 120.00233 * 359.75100 * 4 3 2 6 6 C 1.38215 * 120.00019 * 359.97438 * 5 4 3 7 7 C 1.38207 * 119.99751 * 179.74385 * 2 1 3 8 8 C 1.50699 * 120.00474 * 0.02562 * 7 2 1 9 9 C 1.53003 * 109.46666 * 279.67394 * 8 7 2 10 10 H 1.08996 * 109.47391 * 56.41163 * 9 8 7 11 11 C 1.53003 * 109.46941 * 296.40744 * 9 8 7 12 12 C 1.50701 * 109.46853 * 176.41082 * 9 8 7 13 13 O 1.21288 * 119.99917 * 10.02756 * 12 9 8 14 14 N 1.34771 * 120.00231 * 190.29533 * 12 9 8 15 15 C 1.46508 * 119.99670 * 3.59525 * 14 12 9 16 16 C 1.50698 * 109.47030 * 83.44137 * 15 14 12 17 17 H 1.08001 * 120.00533 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00216 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00340 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99501 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47038 * 89.99902 * 20 18 16 22 22 H 1.48498 * 109.46839 * 209.99503 * 20 18 16 23 23 H 1.48498 * 109.47306 * 329.99585 * 20 18 16 24 24 C 1.46500 * 120.00515 * 183.58853 * 14 12 9 25 25 C 1.53004 * 109.46903 * 84.36203 * 24 14 12 26 26 C 1.52999 * 109.46841 * 65.00327 * 25 24 14 27 27 C 1.52992 * 109.47044 * 185.00074 * 25 24 14 28 28 H 1.09001 * 109.47121 * 273.80687 * 1 2 3 29 29 H 1.09001 * 109.47016 * 33.80685 * 1 2 3 30 30 H 1.09000 * 109.47336 * 153.80531 * 1 2 3 31 31 H 1.07991 * 120.00340 * 0.04741 * 3 2 1 32 32 H 1.07998 * 119.99948 * 179.76505 * 4 3 2 33 33 H 1.07994 * 119.99913 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.00270 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47297 * 159.67231 * 8 7 2 36 36 H 1.09001 * 109.46633 * 39.66963 * 8 7 2 37 37 H 1.08995 * 109.47227 * 63.90868 * 11 9 8 38 38 H 1.09005 * 109.46959 * 183.91207 * 11 9 8 39 39 H 1.09001 * 109.47074 * 303.90590 * 11 9 8 40 40 H 1.08999 * 109.47148 * 203.43971 * 15 14 12 41 41 H 1.08994 * 109.47001 * 323.43817 * 15 14 12 42 42 H 0.97004 * 120.00366 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47254 * 204.36310 * 24 14 12 44 44 H 1.08997 * 109.46882 * 324.36724 * 24 14 12 45 45 H 1.08995 * 109.47085 * 305.00314 * 25 24 14 46 46 H 1.09000 * 109.47158 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.46981 * 299.99960 * 26 25 24 48 48 H 1.08995 * 109.47292 * 60.00114 * 26 25 24 49 49 H 1.09008 * 109.47371 * 60.00049 * 27 25 24 50 50 H 1.08995 * 109.47236 * 179.97438 * 27 25 24 51 51 H 1.09000 * 109.47335 * 300.00529 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0056 5 6 4.2717 0.0000 -0.0061 6 6 3.5807 -1.1970 -0.0003 7 6 2.1980 -1.1969 0.0054 8 6 1.4446 -2.5020 0.0106 9 6 0.9792 -2.8164 1.4338 10 1 0.3782 -1.9889 1.8107 11 6 2.1982 -3.0143 2.3370 12 6 0.1509 -4.0754 1.4249 13 8 0.1014 -4.7616 0.4260 14 7 -0.5390 -4.4360 2.5250 15 6 -0.5475 -3.5645 3.7026 16 6 -1.5969 -2.4969 3.5299 17 1 -2.1978 -2.4703 2.6329 18 6 -1.7908 -1.5544 4.5175 19 7 -2.7062 -0.6225 4.3666 20 14 -0.7520 -1.6007 6.0693 21 1 0.4699 -0.7803 5.8717 22 1 -1.5361 -1.0550 7.2062 23 1 -0.3640 -3.0036 6.3637 24 6 -1.2806 -5.6993 2.5433 25 6 -0.3351 -6.8402 2.9243 26 6 0.1555 -6.6381 4.3594 27 6 -1.0780 -8.1738 2.8225 28 1 -0.3633 0.0682 1.0254 29 1 -0.3633 0.8539 -0.5718 30 1 -0.3634 -0.9221 -0.4536 31 1 1.6583 2.1326 0.0008 32 1 4.1204 2.1326 -0.0095 33 1 5.3516 0.0000 -0.0109 34 1 4.1206 -2.1323 -0.0011 35 1 2.0976 -3.3000 -0.3428 36 1 0.5781 -2.4239 -0.6461 37 1 2.7599 -2.0822 2.3987 38 1 1.8682 -3.3063 3.3340 39 1 2.8350 -3.7955 1.9218 40 1 -0.7731 -4.1554 4.5903 41 1 0.4308 -3.0975 3.8160 42 1 -2.8423 0.0408 5.0612 43 1 -2.0872 -5.6365 3.2736 44 1 -1.6993 -5.8891 1.5550 45 1 0.5181 -6.8469 2.2461 46 1 0.8295 -7.4507 4.6307 47 1 0.6848 -5.6880 4.4319 48 1 -0.6977 -6.6315 5.0376 49 1 -1.4277 -8.3178 1.8001 50 1 -0.4044 -8.9866 3.0935 51 1 -1.9314 -8.1671 3.5006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858826853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:14 Heat of formation + Delta-G solvation = -50.342960 kcal Electronic energy + Delta-G solvation = -28201.806861 eV Core-core repulsion = 24678.537201 eV Total energy + Delta-G solvation = -3523.269660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37975 -40.27355 -37.70819 -36.20233 -35.36065 -34.22468 -33.51369 -31.73941 -30.05069 -28.21076 -28.00887 -27.43555 -27.21761 -24.85524 -23.50982 -22.81730 -21.55906 -20.97177 -19.60795 -19.08655 -17.98983 -17.28569 -17.03203 -16.65564 -16.32590 -15.99387 -15.86361 -15.58111 -15.21203 -14.91786 -14.61659 -14.51225 -14.20610 -13.97299 -13.80867 -13.68824 -13.59464 -13.39611 -13.28105 -13.05655 -13.03742 -12.96057 -12.85305 -12.65594 -12.43738 -12.19306 -12.10808 -11.98774 -11.84804 -11.77867 -11.72409 -11.62571 -11.60131 -11.51031 -10.77423 -10.51386 -9.62752 -9.41530 -9.35921 -8.28634 -6.34337 0.49585 0.54214 1.37974 1.39119 1.47803 1.77346 2.31597 2.33928 2.90993 3.05248 3.58151 3.87871 3.94110 4.01800 4.02214 4.08761 4.10135 4.18270 4.22266 4.29770 4.43447 4.49214 4.57628 4.63456 4.64903 4.70520 4.72722 4.74724 4.80979 4.85382 4.89747 4.90053 4.94929 4.98336 5.00224 5.03836 5.06107 5.18207 5.22280 5.24188 5.29679 5.39192 5.41483 5.44118 5.50505 5.65287 5.66539 5.78145 5.86029 6.19661 6.21930 6.62350 6.72239 7.26191 7.38311 8.87412 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005279 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.019719 B = 5303.097093 C = 6869.527059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.050 4.050 9 C -0.100 4.100 10 H 0.088 0.912 11 C -0.138 4.138 12 C 0.520 3.480 13 O -0.593 6.593 14 N -0.591 5.591 15 C 0.211 3.789 16 C -0.536 4.536 17 H 0.027 0.973 18 C 0.025 3.975 19 N -0.939 5.939 20 Si 0.928 3.072 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.236 1.236 24 C 0.119 3.881 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.136 4.136 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.559 -3.841 -2.918 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.088 4.088 8 C -0.088 4.088 9 C -0.121 4.121 10 H 0.106 0.894 11 C -0.195 4.195 12 C 0.309 3.691 13 O -0.475 6.475 14 N -0.319 5.319 15 C 0.089 3.911 16 C -0.575 4.575 17 H 0.046 0.954 18 C -0.175 4.175 19 N -0.578 5.578 20 Si 0.750 3.250 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.159 1.159 24 C -0.004 4.004 25 C -0.122 4.122 26 C -0.200 4.200 27 C -0.194 4.194 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.423 -4.060 -3.318 14.410 hybrid contribution -0.698 0.560 0.583 1.068 sum 12.724 -3.500 -2.735 13.477 Atomic orbital electron populations 1.20804 0.92091 1.02601 1.01769 1.19918 0.95737 0.93618 1.00163 1.21235 0.95258 0.97264 1.01183 1.21418 0.93697 0.99303 0.99745 1.21421 1.01026 0.91899 1.00106 1.21245 0.92694 0.99399 1.00019 1.19737 0.94491 0.93695 1.00895 1.20267 0.99371 0.94484 0.94643 1.21182 0.97544 0.95505 0.97918 0.89419 1.21859 0.95755 1.03074 0.98787 1.20850 0.79584 0.86716 0.81921 1.90558 1.66805 1.56689 1.33488 1.47912 1.48081 1.20847 1.15087 1.19905 0.97223 0.89328 0.84639 1.21495 1.19401 1.12247 1.04321 0.95431 1.25678 0.96047 0.94307 1.01431 1.70043 1.34935 1.17054 1.35805 0.86004 0.79299 0.80743 0.78930 1.18700 1.21146 1.15890 1.21536 0.94473 0.83051 1.01331 1.21397 0.98140 0.94990 0.97704 1.21853 1.01358 1.01626 0.95213 1.21712 1.00570 0.95286 1.01850 0.92817 0.90481 0.92461 0.85251 0.83729 0.83447 0.84651 0.90348 0.92348 0.90758 0.91830 0.91217 0.93535 0.93003 0.92411 0.90640 0.92561 0.92610 0.91125 0.93689 0.92391 0.92999 0.90979 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 8.94 71.24 0.64 -3.29 16 2 C -0.09 -2.94 5.88 -19.87 -0.12 -3.05 16 3 C -0.13 -3.49 9.72 22.27 0.22 -3.27 16 4 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 5 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 6 C -0.12 -2.85 8.85 22.27 0.20 -2.65 16 7 C -0.09 -2.65 4.37 -19.87 -0.09 -2.73 16 8 C -0.05 -1.67 3.56 29.85 0.11 -1.57 16 9 C -0.10 -3.70 1.87 -11.54 -0.02 -3.72 16 10 H 0.09 3.76 6.11 -2.39 -0.01 3.75 16 11 C -0.14 -4.22 8.44 71.98 0.61 -3.61 16 12 C 0.52 21.54 6.84 87.66 0.60 22.14 16 13 O -0.59 -26.70 15.68 -3.05 -0.05 -26.75 16 14 N -0.59 -24.00 2.21 -826.15 -1.82 -25.83 16 15 C 0.21 9.02 2.72 85.63 0.23 9.25 16 16 C -0.54 -28.49 9.09 25.60 0.23 -28.26 16 17 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 18 C 0.02 1.32 5.47 84.66 0.46 1.78 16 19 N -0.94 -55.41 13.96 21.45 0.30 -55.11 16 20 Si 0.93 39.71 27.47 68.60 1.88 41.59 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.24 -8.99 6.54 99.48 0.65 -8.34 16 24 C 0.12 4.30 4.79 86.38 0.41 4.71 16 25 C -0.10 -2.98 3.09 -10.80 -0.03 -3.02 16 26 C -0.14 -3.78 8.37 71.98 0.60 -3.18 16 27 C -0.14 -3.15 9.19 71.98 0.66 -2.48 16 28 H 0.05 2.12 7.96 -2.39 -0.02 2.10 16 29 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.06 2.03 5.99 -2.39 -0.01 2.02 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.14 2.81 8.04 -2.91 -0.02 2.79 16 35 H 0.08 2.48 7.95 -2.39 -0.02 2.46 16 36 H 0.06 2.15 6.36 -2.39 -0.02 2.13 16 37 H 0.07 2.12 6.97 -2.39 -0.02 2.10 16 38 H 0.06 1.99 5.45 -2.38 -0.01 1.98 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.91 5.97 -2.39 -0.01 1.90 16 41 H 0.05 2.12 3.82 -2.39 -0.01 2.11 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16 43 H 0.08 2.71 8.03 -2.39 -0.02 2.69 16 44 H 0.06 2.17 7.54 -2.39 -0.02 2.15 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.31 6.44 -2.39 -0.02 1.29 16 48 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -64.98 393.61 6.30 -58.68 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.83 Total: 35.32 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 5.16 Total: -27.90 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.52 Total: -80.94 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.88 Total: 41.59 kcal Total: -64.98 6.30 -58.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858826853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.334 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds